Rmu_sc0010616.1_g000023

Carboxylesterase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010616.1
OG0000397
Physical Location & Seq
Reverse (-)
74458 .. 75414
957 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010616.1_g000023.1.cds

Sequence Viewer

Length: 957 bp
atggatacaaatccaagcactgaagtatacaaagacttctctcccttcctcaaaatctacaaagacggccgaatcgaacgcctcgccaatactgactttgttccaacatcgtttgatccccaaaccggtgtcggaaccaaagacgctgtgatctcagaggaaacagggctcactgttagactctacatccccaaaaccaaaattactgaaaacccaacaaagcttcctctccttgtttactaccatggaggtgggttttgtatggggtcaccattctgtgcctattacaacagctacgtcagttccttggttgccaaggcaaatgtgattgctgtgtctgtggcttatagaaaggccccagaaaaccctctcccaattgggtttgaagattcatgggcggcgctcaaatgggtcgggtcccattttgagggaaaaggaccagatgagtggctgaatacctatgctgactttgggagagtgttcttgggtggtgatagtgctggtgctaatatagcacatcacatgggtttgagaattggatccgagggtttggttggagttgagcttaatggggttgctttggtgcatccctatttttgggggtcagaaccagttggcgctgaatcgactgtggctgaaaatagagcgatggctgaagctatatggaggtttgtttttccgaccacgagtggggcggatgatccgttgataaacccgggtaaggatccgaaattggggaagttggcggcggagagagtgctggtttgtgttgctgagaaggatgggttggtgcatagggggaggcattacagtgagctgttgaagaaaagtgagtggagtgggagtgtgaaggttgtagagtctaaggaggaggatcatgtgtttcatttgaacaatccgagttgtgataatgctgtggctctgatgaaggagattgtttccttcatcaatgcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0009056 GO:0016787 GO:0016788 GO:0044424 GO:0044444 GO:0044464 GO:0052689
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

318

Amino Acids

34.75

Weight (kDa)

5.63

Isoelectric Point (pI)

28.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000397)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48690 AT3G48700
fragaria_vesca FvH4_2g06400 FvH4_2g06430 FvH4_2g06450 FvH4_2g06480 FvH4_2g06560
malus_domestica MD05G1076400.v1.1 MD05G1076500.v1.1 MD05G1078900.v1.1 MD05G1191000.v1.1 MD05G1191100.v1.1 MD08G1226300.v1.1 MD10G1091000.v1.1 MD10G1091200.v1.1 MD10G1091400.v1.1 MD10G1091600.v1.1 MD10G1091900.v1.1
prunus_persica Prupe.8G120800_v2.0.a1 Prupe.8G121100_v2.0.a1 Prupe.8G121200_v2.0.a1 Prupe.8G121300_v2.0.a1 Prupe.8G121400_v2.0.a1 Prupe.8G121500_v2.0.a1 Prupe.8G121600_v2.0.a1 Prupe.8G121700_v2.0.a1 Prupe.8G121900_v2.0.a1 Prupe.8G122000_v2.0.a1 Prupe.I000800_v2.0.a1
pyrus_communis pycom05g07040 pycom05g17560 pycom05g17680 pycom05g17760 pycom10g07450 pycom10g07470 pycom10g07550
rosa_chinensis RchiOBHm_Chr6g0258271 RchiOBHm_Chr6g0258281 RchiOBHm_Chr6g0258291 RchiOBHm_Chr6g0258311 RchiOBHm_Chr6g0258321 RchiOBHm_Chr6g0258501
rosa_laevigata RLG00000014606 RLG00000014621 RLG00000014622 RLG00000014624 RLG00000014625 RLG00000014627 RLG00000014629 RLG00000014633 RLG00000014635
rosa_multiflora Rmu_co8014592.1_g000001 Rmu_co8366243.1_g000001 Rmu_sc0001663.1_g000004 Rmu_sc0005877.1_g000001 Rmu_sc0005877.1_g000006 Rmu_sc0005877.1_g000007 Rmu_sc0007367.1_g000009 Rmu_sc0007367.1_g000019 Rmu_sc0010616.1_g000022 Rmu_sc0010616.1_g000023 Rmu_ssc0000213.1_g000009
rosa_roxburghii Rroxscaffold_178G00437230 Rroxscaffold_178G00437250 Rroxscaffold_178G00437280 Rroxscaffold_178G00437320 Rroxscaffold_178G00437340 Rroxscaffold_178G00437350 Rroxscaffold_178G00437480 Rroxscaffold_7G00205390 Rroxscaffold_7G00205410 Rroxscaffold_7G00205450 Rroxscaffold_7G00205490 Rroxscaffold_7G00205510 Rroxscaffold_7G00205520 Rroxscaffold_7G00205670 Rroxscaffold_7G00205730
rosa_rugosa Rorug05G0579800 Rorug05G0580500 Rorug05G0580600 Rorug05G0580700 Rorug05G0580900 Rorug05G0581000 Rorug05G0581900
rosa_samantha Rh6CG084800 Rh6CG085100 Rh6CG085200 Rh6CG085400 Rh6CG085500 Rh6CG085600 Rh6CG085700 Rh6CG086900
rosa_wichuraiana Rw6G008300 Rw6G008310 Rw6G008360 Rw6G008370 Rw6G008380 Rw6G008390 Rw6G008430 Rw6G008440 Rw6G008530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 27
AciI CCGC 4 cut(s) 398, 695, 746, 749
AclWI GGATC 7 cut(s) 110, 534, 547, 695, 719, 732, 882
AcoI YGGCCR 1 cut(s) 67
AcuI CTGAAG 2 cut(s) 42, 675
AfiI CCNNNNNNNGG 6 cut(s) 125, 427, 597, 690, 721, 734
AgeI ACCGGT 1 cut(s) 125
AgsI TTSAA 3 cut(s) 386, 823, 892
AjuI GAANNNNNNNTTGG 2 cut(s) 770, 802
AluBI AGCT 5 cut(s) 223, 294, 565, 659, 817
AluI AGCT 5 cut(s) 223, 294, 565, 659, 817
AlwI GGATC 7 cut(s) 110, 534, 547, 695, 719, 732, 882
Ama87I CYCGRG 1 cut(s) 715
AoxI GGCC 2 cut(s) 67, 354
AsiGI ACCGGT 1 cut(s) 125
AspLEI GCGC 2 cut(s) 403, 620
AspS9I GGNCC 3 cut(s) 355, 417, 437
AsuC2I CCSGG 2 cut(s) 716, 717
AsuHPI GGTGA 2 cut(s) 261, 503
AvaI CYCGRG 1 cut(s) 715
AvaII GGWCC 2 cut(s) 417, 437
BamHI GGATCC 2 cut(s) 539, 724
BanII GRGCYC 1 cut(s) 171
BauI CACGAG 1 cut(s) 685
BccI CCATC 2 cut(s) 643, 776
BceAI ACGGC 1 cut(s) 82
BcnI CCSGG 2 cut(s) 716, 717
BfoI RGCGCY 2 cut(s) 404, 621
BisI GCNGC 2 cut(s) 399, 747
BlsI GCNGC 2 cut(s) 400, 748
Bme1390I CCNGG 2 cut(s) 716, 717
Bme18I GGWCC 2 cut(s) 417, 437
BmeT110I CYCGRG 1 cut(s) 715
BmgT120I GGNCC 3 cut(s) 355, 417, 437
BmiI GGNNCC 6 cut(s) 136, 357, 418, 419, 541, 726
BmrFI CCNGG 2 cut(s) 716, 717
BmsI GCATC 1 cut(s) 595
BpuMI CCSGG 2 cut(s) 716, 717
BsaBI GATNNNNATC 1 cut(s) 9
BsaJI CCNNGG 5 cut(s) 244, 306, 315, 543, 715
BsaWI WCCGGW 1 cut(s) 125
BsaXI ACNNNNNCTCC 2 cut(s) 829, 859
Bsc4I CCNNNNNNNGG 6 cut(s) 125, 427, 597, 690, 721, 734
Bse118I RCCGGY 1 cut(s) 125
Bse1I ACTGG 1 cut(s) 611
Bse8I GATNNNNATC 1 cut(s) 9
BseDI CCNNGG 5 cut(s) 244, 306, 315, 543, 715
BseGI GGATG 4 cut(s) 186, 586, 703, 787
BseJI GATNNNNATC 1 cut(s) 9
BseLI CCNNNNNNNGG 6 cut(s) 125, 427, 597, 690, 721, 734
BseMII CTCAG 2 cut(s) 168, 765
BseNI ACTGG 1 cut(s) 611
BseRI GAGGAG 1 cut(s) 884
BseX3I CGGCCG 1 cut(s) 67
Bsh1285I CGRYCG 1 cut(s) 70
BshFI GGCC 2 cut(s) 69, 356
BshTI ACCGGT 1 cut(s) 125
BsiEI CGRYCG 1 cut(s) 70
BsiHKCI CYCGRG 1 cut(s) 715
BsiSI CCGG 2 cut(s) 126, 716
BslFI GGGAC 1 cut(s) 403
BslI CCNNNNNNNGG 6 cut(s) 125, 427, 597, 690, 721, 734
BsmFI GGGAC 1 cut(s) 403
BsnI GGCC 2 cut(s) 69, 356
BsoBI CYCGRG 1 cut(s) 715
Bsp1286I GDGCHC 1 cut(s) 171
Bsp143I GATC 6 cut(s) 115, 150, 539, 700, 724, 874
Bsp19I CCATGG 1 cut(s) 244
BspACI CCGC 4 cut(s) 398, 695, 746, 749
BspANI GGCC 2 cut(s) 69, 356
BspCNI CTCAG 2 cut(s) 167, 766
BspLI GGNNCC 6 cut(s) 136, 357, 418, 419, 541, 726
BspPI GGATC 7 cut(s) 110, 534, 547, 695, 719, 732, 882
BsrFI RCCGGY 1 cut(s) 125
BsrI ACTGG 1 cut(s) 611
BssAI RCCGGY 1 cut(s) 125
BssECI CCNNGG 5 cut(s) 244, 306, 315, 543, 715
BssMI GATC 6 cut(s) 115, 150, 539, 700, 724, 874
BssNAI GTATAC 1 cut(s) 28
BssSI CACGAG 1 cut(s) 685
BssT1I CCWWGG 3 cut(s) 244, 306, 315
Bst1107I GTATAC 1 cut(s) 28
Bst2BI CACGAG 1 cut(s) 685
Bst4CI ACNGT 3 cut(s) 175, 631, 812
BstDEI CTNAG 3 cut(s) 154, 774, 864
BstDSI CCRYGG 1 cut(s) 244
BstEII GGTNACC 1 cut(s) 267
BstF5I GGATG 4 cut(s) 186, 586, 703, 787
BstH2I RGCGCY 2 cut(s) 404, 621
BstHHI GCGC 2 cut(s) 403, 620
BstKTI GATC 6 cut(s) 118, 153, 542, 703, 727, 877
BstMBI GATC 6 cut(s) 115, 150, 539, 700, 724, 874
BstMCI CGRYCG 1 cut(s) 70
BstMWI GCNNNNNNNGC 1 cut(s) 512
BstPI GGTNACC 1 cut(s) 267
BstSCI CCNGG 2 cut(s) 714, 715
BstX2I RGATCY 2 cut(s) 539, 724
BstXI CCANNNNNNTGG 2 cut(s) 251, 447
BstYI RGATCY 2 cut(s) 539, 724
BstZ17I GTATAC 1 cut(s) 28
BstZI CGGCCG 1 cut(s) 67
BsuRI GGCC 2 cut(s) 69, 356
BtgI CCRYGG 1 cut(s) 244
BtgZI GCGATG 1 cut(s) 662
BtsCI GGATG 4 cut(s) 186, 586, 703, 787
BtsIMutI CAGTG 3 cut(s) 18, 171, 817
CfoI GCGC 2 cut(s) 403, 620
Cfr10I RCCGGY 1 cut(s) 125
Cfr13I GGNCC 3 cut(s) 355, 417, 437
Cfr9I CCCGGG 1 cut(s) 715
CseI GACGC 1 cut(s) 152
CspAI ACCGGT 1 cut(s) 125
CviAII CATG 4 cut(s) 245, 393, 523, 878
DdeI CTNAG 3 cut(s) 154, 774, 864
DpnI GATC 6 cut(s) 117, 152, 541, 702, 726, 876
DpnII GATC 6 cut(s) 115, 150, 539, 700, 724, 874
EaeI YGGCCR 1 cut(s) 67
EagI CGGCCG 1 cut(s) 67
EciI GGCGGA 2 cut(s) 710, 764
EclXI CGGCCG 1 cut(s) 67
Eco130I CCWWGG 3 cut(s) 244, 306, 315
Eco24I GRGCYC 1 cut(s) 171
Eco47I GGWCC 2 cut(s) 417, 437
Eco52I CGGCCG 1 cut(s) 67
Eco57I CTGAAG 2 cut(s) 42, 675
Eco88I CYCGRG 1 cut(s) 715
Eco91I GGTNACC 1 cut(s) 267
EcoO109I RGGNCCY 2 cut(s) 355, 417
EcoO65I GGTNACC 1 cut(s) 267
EcoT14I CCWWGG 3 cut(s) 244, 306, 315
EcoT38I GRGCYC 1 cut(s) 171
ErhI CCWWGG 3 cut(s) 244, 306, 315
FaeI CATG 4 cut(s) 248, 396, 526, 881
FaqI GGGAC 1 cut(s) 403
FatI CATG 4 cut(s) 244, 392, 522, 877
FblI GTMKAC 1 cut(s) 27
Fnu4HI GCNGC 2 cut(s) 399, 747
FokI GGATG 4 cut(s) 173, 573, 710, 794
FriOI GRGCYC 1 cut(s) 171
Fsp4HI GCNGC 2 cut(s) 399, 747
GlaI GCGC 2 cut(s) 402, 619
GluI GCNGC 2 cut(s) 399, 747
HaeII RGCGCY 2 cut(s) 404, 621
HaeIII GGCC 2 cut(s) 69, 356
HapII CCGG 2 cut(s) 126, 716
HgaI GACGC 1 cut(s) 152
HhaI GCGC 2 cut(s) 403, 620
Hin1II CATG 4 cut(s) 248, 396, 526, 881
Hin6I GCGC 2 cut(s) 401, 618
HinP1I GCGC 2 cut(s) 401, 618
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 5 cut(s) 72, 180, 389, 623, 860
HpaII CCGG 2 cut(s) 126, 716
HphI GGTGA 2 cut(s) 261, 503
Hpy166II GTNNAC 2 cut(s) 28, 238
Hpy188I TCNGA 8 cut(s) 134, 157, 544, 607, 681, 729, 900, 924
Hpy8I GTNNAC 2 cut(s) 28, 238
HpyAV CCTTC 5 cut(s) 55, 772, 844, 922, 952
HpyCH4III ACNGT 3 cut(s) 175, 631, 812
HpyCH4IV ACGT 1 cut(s) 297
HpyCH4V TGCA 2 cut(s) 586, 793
HpyF10VI GCNNNNNNNGC 1 cut(s) 512
HpyF3I CTNAG 3 cut(s) 154, 774, 864
HpySE526I ACGT 1 cut(s) 297
Hsp92II CATG 4 cut(s) 248, 396, 526, 881
HspAI GCGC 2 cut(s) 401, 618
KflI GGGWCCC 1 cut(s) 417
Kzo9I GATC 6 cut(s) 115, 150, 539, 700, 724, 874
LpnPI CCDG 8 cut(s) 139, 150, 372, 453, 486, 624, 729, 746
LweI GCATC 1 cut(s) 595
MaeII ACGT 1 cut(s) 297
MaeIII GTNAC 1 cut(s) 267
MalI GATC 6 cut(s) 117, 152, 541, 702, 726, 876
MboI GATC 6 cut(s) 115, 150, 539, 700, 724, 874
MboII GAAGA 2 cut(s) 398, 835
MfeI CAATTG 1 cut(s) 375
MflI RGATCY 2 cut(s) 539, 724
MhlI GDGCHC 1 cut(s) 171
MluCI AATT 4 cut(s) 201, 375, 534, 731
MlyI GAGTC 2 cut(s) 174, 869
MmeI TCCRAC 4 cut(s) 112, 128, 535, 704
MseI TTAA 1 cut(s) 567
MslI CAYNNNNRTG 2 cut(s) 249, 810
MspI CCGG 2 cut(s) 126, 716
MspR9I CCNGG 2 cut(s) 716, 717
MunI CAATTG 1 cut(s) 375
MwoI GCNNNNNNNGC 1 cut(s) 512
NciI CCSGG 2 cut(s) 716, 717
NcoI CCATGG 1 cut(s) 244
NdeII GATC 6 cut(s) 115, 150, 539, 700, 724, 874
NlaIII CATG 4 cut(s) 248, 396, 526, 881
NlaIV GGNNCC 6 cut(s) 136, 357, 418, 419, 541, 726
NmuCI GTSAC 1 cut(s) 267
PcsI WCGNNNNNNNCGW 1 cut(s) 72
PfeI GAWTC 3 cut(s) 72, 389, 623
PinAI ACCGGT 1 cut(s) 125
PkrI GCNGC 2 cut(s) 400, 748
PleI GAGTC 2 cut(s) 174, 868
PpsI GAGTC 2 cut(s) 174, 868
PpuMI RGGWCCY 1 cut(s) 417
Psp5II RGGWCCY 1 cut(s) 417
PspEI GGTNACC 1 cut(s) 267
PspN4I GGNNCC 6 cut(s) 136, 357, 418, 419, 541, 726
PspPI GGNCC 3 cut(s) 355, 417, 437
PspPPI RGGWCCY 1 cut(s) 417
PsuI RGATCY 2 cut(s) 539, 724
RseI CAYNNNNRTG 2 cut(s) 249, 810
SaqAI TTAA 1 cut(s) 567
SatI GCNGC 2 cut(s) 399, 747
Sau3AI GATC 6 cut(s) 115, 150, 539, 700, 724, 874
Sau96I GGNCC 3 cut(s) 355, 417, 437
SchI GAGTC 2 cut(s) 174, 869
ScrFI CCNGG 2 cut(s) 716, 717
SduI GDGCHC 1 cut(s) 171
SfaNI GCATC 1 cut(s) 595
SinI GGWCC 2 cut(s) 417, 437
SmaI CCCGGG 1 cut(s) 717
SmiMI CAYNNNNRTG 2 cut(s) 249, 810
Sse9I AATT 4 cut(s) 201, 375, 534, 731
SsiI CCGC 4 cut(s) 398, 695, 746, 749
StyD4I CCNGG 2 cut(s) 714, 715
StyI CCWWGG 3 cut(s) 244, 306, 315
TaaI ACNGT 3 cut(s) 175, 631, 812
TaiI ACGT 1 cut(s) 300
TaqI TCGA 2 cut(s) 75, 626
TasI AATT 4 cut(s) 201, 375, 534, 731
TauI GCSGC 2 cut(s) 401, 749
TfiI GAWTC 3 cut(s) 72, 389, 623
Tru1I TTAA 1 cut(s) 567
Tru9I TTAA 1 cut(s) 567
TscAI CASTG 3 cut(s) 25, 178, 817
TseFI GTSAC 1 cut(s) 267
Tsp45I GTSAC 1 cut(s) 267
TspDTI ATGAA 4 cut(s) 381, 875, 934, 941
TspGWI ACGGA 1 cut(s) 693
TspMI CCCGGG 1 cut(s) 715
TspRI CASTG 3 cut(s) 25, 178, 817
VpaK11BI GGWCC 2 cut(s) 417, 437
XmaI CCCGGG 1 cut(s) 715
XmiI GTMKAC 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.