RchiOBHm_Chr6g0258321

Carboxylesterase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000397
Physical Location & Seq
Reverse (-)
13697124 .. 13698568
1445 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23164

Sequence Viewer

Length: 1128 bp
ATGGCTACTTGTTTTTATGGCCTTTCCATGTCTTTATGTCCAAAACCAAAAACTCAGACTTTCACTCTAAACCTCCATTCCAATCCCCCCTCTTCTTCATTGACACGTCTCTCTTTTCCACGCAGAAAGCCCTTCATTATTACTCGCTCACAGACCTCCTCCTCCCCCGCCATGGATACAAATCCAAGCACTGAAGTATACAAAGACTTCTCTCCCTTCCTCAAAATCTACAAAGACGGCCGAATTGAACGCCTCGCCAATACTGACTTTGTTCCAACATCGTTTGATCCCCAAACCGGTGTCGAAACCAAAGACGCTGTGATCTCAGAGGAAACAGGGCTCACTGTTAGACTCTACATCCCCAAAGCCAAAATTACTGAAAACCCAACAAAGCTTCCTCTCCTTGTTTACTACCATGGAGGTGGGTTTTGTATGGGGTCACCATTCTGTGCCTATTACAACAGCTATGTCACTTCCTTGGTTGCCAAGGCAAACGTGATTGCTGTGTCTGTGGCTTATAGAAAGGCCCCAGAAAACCCTCTCCCAATTGGGTTTGAAGATTCATGGGCCGCGCTCAAATGGGTCGGGTCCCATTTTGAGGGAAAAGGACCAGATGAGTGGCTGAATACCTATGCTGACTTTGGGAGAGTGTTCTTGGGTGGTGATAGTGCTGGTGCTAATATAGCCCATCAAATGGGTTTGAGAATTGGGTCCGAGGGTTTGGTTGGTGTGAAGCTTAATGGGGTTGCTTTGGTGCATCCCTATTTTTGGGGGTCAGAACCAGTTGGGGCTGAATCGACTGTGGCAGAAAATAGAGCGATGGCTGAAGCTATATGGAGGTTTGCTTTTCCGACCACGAGTGGGGCGGATGATCCGTTGATAAACCCGGGTAAGGATCCGAAATTGGGGAAGTTGGCGGCGGAGAGAGTGCTGGTTTGTATTGCTGAGAAGGATGGGTTGGTGCATAGGGGGAGGCATTACAGTGAGCTGTTGAAGAAAAGTGAGTGGAGTGGGAGTGTGGAGGTTGTAGAGTCCAAGGAGGAGGATCATGTGTTTCATTTGAACAATCCGACTTGTGATAATGCTGTGGCTCTGATGAAGGAGATTGTTTCCTTGATCAATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0009056 GO:0016787 GO:0016788 GO:0044424 GO:0044444 GO:0044464 GO:0052689
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

375

Amino Acids

41.06

Weight (kDa)

6.52

Isoelectric Point (pI)

35.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COesterase PF00135 103 - 242 1.3e-10 Carboxylesterase family
BD-FAE PF20434 128 - 235 2e-07 BD-FAE
Abhydrolase_3 PF07859 135 - 353 2.6e-48 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000397)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48690 AT3G48700
fragaria_vesca FvH4_2g06400 FvH4_2g06430 FvH4_2g06450 FvH4_2g06480 FvH4_2g06560
malus_domestica MD05G1076400.v1.1 MD05G1076500.v1.1 MD05G1078900.v1.1 MD05G1191000.v1.1 MD05G1191100.v1.1 MD08G1226300.v1.1 MD10G1091000.v1.1 MD10G1091200.v1.1 MD10G1091400.v1.1 MD10G1091600.v1.1 MD10G1091900.v1.1
prunus_persica Prupe.8G120800_v2.0.a1 Prupe.8G121100_v2.0.a1 Prupe.8G121200_v2.0.a1 Prupe.8G121300_v2.0.a1 Prupe.8G121400_v2.0.a1 Prupe.8G121500_v2.0.a1 Prupe.8G121600_v2.0.a1 Prupe.8G121700_v2.0.a1 Prupe.8G121900_v2.0.a1 Prupe.8G122000_v2.0.a1 Prupe.I000800_v2.0.a1
pyrus_communis pycom05g07040 pycom05g17560 pycom05g17680 pycom05g17760 pycom10g07450 pycom10g07470 pycom10g07550
rosa_chinensis RchiOBHm_Chr6g0258271 RchiOBHm_Chr6g0258281 RchiOBHm_Chr6g0258291 RchiOBHm_Chr6g0258311 RchiOBHm_Chr6g0258321 RchiOBHm_Chr6g0258501
rosa_laevigata RLG00000014606 RLG00000014621 RLG00000014622 RLG00000014624 RLG00000014625 RLG00000014627 RLG00000014629 RLG00000014633 RLG00000014635
rosa_multiflora Rmu_co8014592.1_g000001 Rmu_co8366243.1_g000001 Rmu_sc0001663.1_g000004 Rmu_sc0005877.1_g000001 Rmu_sc0005877.1_g000006 Rmu_sc0005877.1_g000007 Rmu_sc0007367.1_g000009 Rmu_sc0007367.1_g000019 Rmu_sc0010616.1_g000022 Rmu_sc0010616.1_g000023 Rmu_ssc0000213.1_g000009
rosa_roxburghii Rroxscaffold_178G00437230 Rroxscaffold_178G00437250 Rroxscaffold_178G00437280 Rroxscaffold_178G00437320 Rroxscaffold_178G00437340 Rroxscaffold_178G00437350 Rroxscaffold_178G00437480 Rroxscaffold_7G00205390 Rroxscaffold_7G00205410 Rroxscaffold_7G00205450 Rroxscaffold_7G00205490 Rroxscaffold_7G00205510 Rroxscaffold_7G00205520 Rroxscaffold_7G00205670 Rroxscaffold_7G00205730
rosa_rugosa Rorug05G0579800 Rorug05G0580500 Rorug05G0580600 Rorug05G0580700 Rorug05G0580900 Rorug05G0581000 Rorug05G0581900
rosa_samantha Rh6CG084800 Rh6CG085100 Rh6CG085200 Rh6CG085400 Rh6CG085500 Rh6CG085600 Rh6CG085700 Rh6CG086900
rosa_wichuraiana Rw6G008300 Rw6G008310 Rw6G008360 Rw6G008370 Rw6G008380 Rw6G008390 Rw6G008430 Rw6G008440 Rw6G008530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 694
AccI GTMKAC 1 cut(s) 198
AccII CGCG 1 cut(s) 572
AciI CCGC 5 cut(s) 168, 570, 866, 917, 920
AclWI GGATC 5 cut(s) 281, 866, 890, 903, 1053
AcoI YGGCCR 1 cut(s) 238
AcuI CTGAAG 2 cut(s) 213, 846
AfiI CCNNNNNNNGG 8 cut(s) 172, 296, 598, 694, 768, 861, 892, 905
AflIII ACRYGT 1 cut(s) 104
AgeI ACCGGT 1 cut(s) 296
AgsI TTSAA 4 cut(s) 248, 557, 994, 1063
AjiI CACGTC 1 cut(s) 107
AjuI GAANNNNNNNTTGG 2 cut(s) 941, 973
AluBI AGCT 5 cut(s) 394, 465, 736, 830, 988
AluI AGCT 5 cut(s) 394, 465, 736, 830, 988
Alw26I GTCTC 1 cut(s) 113
AlwI GGATC 5 cut(s) 281, 866, 890, 903, 1053
Ama87I CYCGRG 1 cut(s) 886
AoxI GGCC 4 cut(s) 19, 238, 525, 567
AsiGI ACCGGT 1 cut(s) 296
AspLEI GCGC 1 cut(s) 574
AspS9I GGNCC 5 cut(s) 526, 567, 588, 608, 711
AsuC2I CCSGG 2 cut(s) 887, 888
AsuHPI GGTGA 2 cut(s) 432, 674
AvaI CYCGRG 1 cut(s) 886
AvaII GGWCC 3 cut(s) 588, 608, 711
BamHI GGATCC 1 cut(s) 895
BanII GRGCYC 1 cut(s) 342
BauI CACGAG 1 cut(s) 856
BccI CCATC 3 cut(s) 696, 814, 947
BceAI ACGGC 1 cut(s) 253
BciVI GTATCC 1 cut(s) 169
BclI TGATCA 1 cut(s) 1116
BcnI CCSGG 2 cut(s) 887, 888
BcoDI GTCTC 1 cut(s) 113
BfuI GTATCC 1 cut(s) 169
BisI GCNGC 2 cut(s) 570, 918
BlsI GCNGC 2 cut(s) 571, 919
Bme1390I CCNGG 2 cut(s) 887, 888
Bme18I GGWCC 3 cut(s) 588, 608, 711
BmeT110I CYCGRG 1 cut(s) 886
BmgBI CACGTC 1 cut(s) 107
BmgT120I GGNCC 5 cut(s) 526, 567, 588, 608, 711
BmiI GGNNCC 5 cut(s) 528, 589, 590, 712, 897
BmrFI CCNGG 2 cut(s) 887, 888
BmsI GCATC 1 cut(s) 766
BpuMI CCSGG 2 cut(s) 887, 888
BsaBI GATNNNNATC 1 cut(s) 180
BsaJI CCNNGG 7 cut(s) 171, 415, 477, 486, 714, 886, 1035
BsaWI WCCGGW 1 cut(s) 296
BsaXI ACNNNNNCTCC 2 cut(s) 1000, 1030
Bsc4I CCNNNNNNNGG 8 cut(s) 172, 296, 598, 694, 768, 861, 892, 905
Bse118I RCCGGY 1 cut(s) 296
Bse1I ACTGG 1 cut(s) 782
Bse8I GATNNNNATC 1 cut(s) 180
BseDI CCNNGG 7 cut(s) 171, 415, 477, 486, 714, 886, 1035
BseGI GGATG 4 cut(s) 357, 757, 874, 958
BseJI GATNNNNATC 1 cut(s) 180
BseLI CCNNNNNNNGG 8 cut(s) 172, 296, 598, 694, 768, 861, 892, 905
BseMII CTCAG 3 cut(s) 68, 339, 936
BseNI ACTGG 1 cut(s) 782
BseRI GAGGAG 3 cut(s) 148, 151, 1055
BseX3I CGGCCG 1 cut(s) 238
Bsh1236I CGCG 1 cut(s) 572
Bsh1285I CGRYCG 1 cut(s) 241
BshFI GGCC 4 cut(s) 21, 240, 527, 569
BshTI ACCGGT 1 cut(s) 296
BsiEI CGRYCG 1 cut(s) 241
BsiHKCI CYCGRG 1 cut(s) 886
BsiSI CCGG 2 cut(s) 297, 887
BslFI GGGAC 1 cut(s) 574
BslI CCNNNNNNNGG 8 cut(s) 172, 296, 598, 694, 768, 861, 892, 905
BsmAI GTCTC 1 cut(s) 113
BsmBI CGTCTC 1 cut(s) 113
BsmFI GGGAC 1 cut(s) 574
BsnI GGCC 4 cut(s) 21, 240, 527, 569
BsoBI CYCGRG 1 cut(s) 886
Bsp1286I GDGCHC 1 cut(s) 342
Bsp143I GATC 6 cut(s) 286, 321, 871, 895, 1045, 1116
Bsp19I CCATGG 2 cut(s) 171, 415
BspACI CCGC 5 cut(s) 168, 570, 866, 917, 920
BspANI GGCC 4 cut(s) 21, 240, 527, 569
BspCNI CTCAG 3 cut(s) 67, 338, 937
BspFNI CGCG 1 cut(s) 572
BspLI GGNNCC 5 cut(s) 528, 589, 590, 712, 897
BspPI GGATC 5 cut(s) 281, 866, 890, 903, 1053
BsrFI RCCGGY 1 cut(s) 296
BsrI ACTGG 1 cut(s) 782
BssAI RCCGGY 1 cut(s) 296
BssECI CCNNGG 7 cut(s) 171, 415, 477, 486, 714, 886, 1035
BssMI GATC 6 cut(s) 286, 321, 871, 895, 1045, 1116
BssNAI GTATAC 1 cut(s) 199
BssSI CACGAG 1 cut(s) 856
BssT1I CCWWGG 5 cut(s) 171, 415, 477, 486, 1035
Bst1107I GTATAC 1 cut(s) 199
Bst2BI CACGAG 1 cut(s) 856
Bst4CI ACNGT 3 cut(s) 346, 802, 983
Bst6I CTCTTC 1 cut(s) 97
BstDEI CTNAG 3 cut(s) 54, 325, 945
BstDSI CCRYGG 2 cut(s) 171, 415
BstEII GGTNACC 1 cut(s) 438
BstF5I GGATG 4 cut(s) 357, 757, 874, 958
BstFNI CGCG 1 cut(s) 572
BstHHI GCGC 1 cut(s) 574
BstKTI GATC 6 cut(s) 289, 324, 874, 898, 1048, 1119
BstMAI GTCTC 1 cut(s) 113
BstMBI GATC 6 cut(s) 286, 321, 871, 895, 1045, 1116
BstMCI CGRYCG 1 cut(s) 241
BstMWI GCNNNNNNNGC 1 cut(s) 683
BstPI GGTNACC 1 cut(s) 438
BstSCI CCNGG 2 cut(s) 885, 886
BstUI CGCG 1 cut(s) 572
BstX2I RGATCY 1 cut(s) 895
BstXI CCANNNNNNTGG 2 cut(s) 422, 618
BstYI RGATCY 1 cut(s) 895
BstZ17I GTATAC 1 cut(s) 199
BstZI CGGCCG 1 cut(s) 238
BsuI GTATCC 1 cut(s) 169
BsuRI GGCC 4 cut(s) 21, 240, 527, 569
BtgI CCRYGG 2 cut(s) 171, 415
BtgZI GCGATG 1 cut(s) 833
BtrI CACGTC 1 cut(s) 107
BtsCI GGATG 4 cut(s) 357, 757, 874, 958
BtsIMutI CAGTG 3 cut(s) 189, 342, 988
CfoI GCGC 1 cut(s) 574
Cfr10I RCCGGY 1 cut(s) 296
Cfr13I GGNCC 5 cut(s) 526, 567, 588, 608, 711
Cfr9I CCCGGG 1 cut(s) 886
CseI GACGC 1 cut(s) 323
CspAI ACCGGT 1 cut(s) 296
CviAII CATG 5 cut(s) 28, 172, 416, 564, 1049
DdeI CTNAG 3 cut(s) 54, 325, 945
DpnI GATC 6 cut(s) 288, 323, 873, 897, 1047, 1118
DpnII GATC 6 cut(s) 286, 321, 871, 895, 1045, 1116
EaeI YGGCCR 1 cut(s) 238
EagI CGGCCG 1 cut(s) 238
Eam1104I CTCTTC 1 cut(s) 97
EarI CTCTTC 1 cut(s) 97
EciI GGCGGA 2 cut(s) 881, 935
EclXI CGGCCG 1 cut(s) 238
Eco130I CCWWGG 5 cut(s) 171, 415, 477, 486, 1035
Eco24I GRGCYC 1 cut(s) 342
Eco47I GGWCC 3 cut(s) 588, 608, 711
Eco52I CGGCCG 1 cut(s) 238
Eco57I CTGAAG 2 cut(s) 213, 846
Eco88I CYCGRG 1 cut(s) 886
Eco91I GGTNACC 1 cut(s) 438
EcoO109I RGGNCCY 2 cut(s) 526, 588
EcoO65I GGTNACC 1 cut(s) 438
EcoT14I CCWWGG 5 cut(s) 171, 415, 477, 486, 1035
EcoT38I GRGCYC 1 cut(s) 342
ErhI CCWWGG 5 cut(s) 171, 415, 477, 486, 1035
Esp3I CGTCTC 1 cut(s) 113
FaeI CATG 5 cut(s) 31, 175, 419, 567, 1052
FaqI GGGAC 1 cut(s) 574
FatI CATG 5 cut(s) 27, 171, 415, 563, 1048
FauI CCCGC 1 cut(s) 175
FbaI TGATCA 1 cut(s) 1116
FblI GTMKAC 1 cut(s) 198
Fnu4HI GCNGC 2 cut(s) 570, 918
FokI GGATG 4 cut(s) 344, 744, 881, 965
FriOI GRGCYC 1 cut(s) 342
Fsp4HI GCNGC 2 cut(s) 570, 918
GlaI GCGC 1 cut(s) 573
GluI GCNGC 2 cut(s) 570, 918
HaeIII GGCC 4 cut(s) 21, 240, 527, 569
HapII CCGG 2 cut(s) 297, 887
HgaI GACGC 1 cut(s) 323
HhaI GCGC 1 cut(s) 574
Hin1II CATG 5 cut(s) 31, 175, 419, 567, 1052
Hin6I GCGC 1 cut(s) 572
HinP1I GCGC 1 cut(s) 572
HindIII AAGCTT 2 cut(s) 392, 734
HinfI GANTC 4 cut(s) 351, 560, 794, 1031
HpaII CCGG 2 cut(s) 297, 887
HphI GGTGA 2 cut(s) 432, 674
Hpy166II GTNNAC 2 cut(s) 199, 409
Hpy188I TCNGA 8 cut(s) 57, 328, 715, 778, 852, 900, 1071, 1095
Hpy8I GTNNAC 2 cut(s) 199, 409
HpyAV CCTTC 4 cut(s) 142, 226, 943, 1093
HpyCH4III ACNGT 3 cut(s) 346, 802, 983
HpyCH4IV ACGT 2 cut(s) 106, 495
HpyCH4V TGCA 2 cut(s) 757, 964
HpyF10VI GCNNNNNNNGC 1 cut(s) 683
HpyF3I CTNAG 3 cut(s) 54, 325, 945
HpySE526I ACGT 2 cut(s) 106, 495
Hsp92II CATG 5 cut(s) 31, 175, 419, 567, 1052
HspAI GCGC 1 cut(s) 572
KflI GGGWCCC 1 cut(s) 588
Ksp22I TGATCA 1 cut(s) 1116
Kzo9I GATC 6 cut(s) 286, 321, 871, 895, 1045, 1116
LpnPI CCDG 8 cut(s) 310, 321, 543, 624, 657, 795, 900, 917
LweI GCATC 1 cut(s) 766
MaeII ACGT 2 cut(s) 106, 495
MaeIII GTNAC 2 cut(s) 438, 469
MalI GATC 6 cut(s) 288, 323, 873, 897, 1047, 1118
MboI GATC 6 cut(s) 286, 321, 871, 895, 1045, 1116
MboII GAAGA 4 cut(s) 84, 87, 569, 1006
MfeI CAATTG 1 cut(s) 546
MflI RGATCY 1 cut(s) 895
MhlI GDGCHC 1 cut(s) 342
MluCI AATT 5 cut(s) 243, 372, 546, 705, 902
MlyI GAGTC 2 cut(s) 345, 1040
MmeI TCCRAC 3 cut(s) 299, 875, 1094
MseI TTAA 1 cut(s) 738
MslI CAYNNNNRTG 2 cut(s) 420, 981
MspI CCGG 2 cut(s) 297, 887
MspR9I CCNGG 2 cut(s) 887, 888
MunI CAATTG 1 cut(s) 546
MvnI CGCG 1 cut(s) 572
MwoI GCNNNNNNNGC 1 cut(s) 683
NciI CCSGG 2 cut(s) 887, 888
NcoI CCATGG 2 cut(s) 171, 415
NdeII GATC 6 cut(s) 286, 321, 871, 895, 1045, 1116
NlaIII CATG 5 cut(s) 31, 175, 419, 567, 1052
NlaIV GGNNCC 5 cut(s) 528, 589, 590, 712, 897
NmuCI GTSAC 2 cut(s) 438, 469
PfeI GAWTC 2 cut(s) 560, 794
PflMI CCANNNNNTGG 1 cut(s) 694
PinAI ACCGGT 1 cut(s) 296
PkrI GCNGC 2 cut(s) 571, 919
PleI GAGTC 2 cut(s) 345, 1039
PpsI GAGTC 2 cut(s) 345, 1039
PpuMI RGGWCCY 1 cut(s) 588
Psp5II RGGWCCY 1 cut(s) 588
PspEI GGTNACC 1 cut(s) 438
PspN4I GGNNCC 5 cut(s) 528, 589, 590, 712, 897
PspPI GGNCC 5 cut(s) 526, 567, 588, 608, 711
PspPPI RGGWCCY 1 cut(s) 588
PsuI RGATCY 1 cut(s) 895
RseI CAYNNNNRTG 2 cut(s) 420, 981
SaqAI TTAA 1 cut(s) 738
SatI GCNGC 2 cut(s) 570, 918
Sau3AI GATC 6 cut(s) 286, 321, 871, 895, 1045, 1116
Sau96I GGNCC 5 cut(s) 526, 567, 588, 608, 711
SchI GAGTC 2 cut(s) 345, 1040
ScrFI CCNGG 2 cut(s) 887, 888
SduI GDGCHC 1 cut(s) 342
SfaNI GCATC 1 cut(s) 766
SinI GGWCC 3 cut(s) 588, 608, 711
SmaI CCCGGG 1 cut(s) 888
SmiMI CAYNNNNRTG 2 cut(s) 420, 981
Sse9I AATT 5 cut(s) 243, 372, 546, 705, 902
SsiI CCGC 5 cut(s) 168, 570, 866, 917, 920
StyD4I CCNGG 2 cut(s) 885, 886
StyI CCWWGG 5 cut(s) 171, 415, 477, 486, 1035
TaaI ACNGT 3 cut(s) 346, 802, 983
TaiI ACGT 2 cut(s) 109, 498
TaqI TCGA 2 cut(s) 303, 797
TasI AATT 5 cut(s) 243, 372, 546, 705, 902
TauI GCSGC 2 cut(s) 572, 920
TfiI GAWTC 2 cut(s) 560, 794
Tru1I TTAA 1 cut(s) 738
Tru9I TTAA 1 cut(s) 738
TscAI CASTG 3 cut(s) 196, 349, 988
TseFI GTSAC 2 cut(s) 438, 469
Tsp45I GTSAC 2 cut(s) 438, 469
TspDTI ATGAA 5 cut(s) 87, 124, 552, 1046, 1112
TspGWI ACGGA 1 cut(s) 864
TspMI CCCGGG 1 cut(s) 886
TspRI CASTG 3 cut(s) 196, 349, 988
Van91I CCANNNNNTGG 1 cut(s) 694
VpaK11BI GGWCC 3 cut(s) 588, 608, 711
XmaI CCCGGG 1 cut(s) 886
XmiI GTMKAC 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.