Rorug05G0580700

Carboxylesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000397
Physical Location & Seq
Reverse (-)
77779624 .. 77780511
888 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0580700.1

Sequence Viewer

Length: 708 bp
ATGCTTCGTGTTGACTTTGTAATGCAACAGTGGAATCTACAATTCCTGTATTCTGGGAGTGTCCTCATGCAAAAAGGTACTGCTGCTGGAAGTGACTTGGAAGCTTTTGGATTTATTGTTTGGTGGGTTTGGAGAAATAGGAATCTTCATCGTCATGGTGAAAGAACATTGAAGGCAGAGGAATTAGTTTCTGCAGCAGAAAAGTGGCAGCTGCAATTTGATGCAGCCAATGCGAAACCTAAAAGTTGTGAACCGAAAAGAGATGTGCAAGGAAGAGTGAATGAAAATCTGCATTTGGAGCTTCATGTCTGGAAACCTCCCAATTTGGGCTGCCTCAAGATGAATTTTGATGGGGCAACGAATGTTAAGAAAGGTGTATGTGGGCTAGGAGTTGTCTTCCGAGACCATCAAGGAAATTTACGAGGGGCTATGGCATTTCCCCAGGTTGGTAATATCTCACCAAGGGCTGTTGAATCTTTGGCATTACCACATGGTCTCAGTTCGGAATGCCATATTTTAGATGAAGTTAAGCAATTAGTTTTATCGTTTACTAGTTGTAGTTGGCACTTTGTGAAGCGCGATTGTAACATGGTTGCACATCGCCTTGCAAAGGAAACTTTGCAGCTAAGTCAACCTTTTTTGTGTTTGGAGTCGGGGCCAGTTTGGCTCTATCAGTGTGTCAATATGGACTTCAATTGTGAAGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

235

Amino Acids

26.67

Weight (kDa)

8.08

Isoelectric Point (pI)

40.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 171 - 205 1.4e-06 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000397)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48690 AT3G48700
fragaria_vesca FvH4_2g06400 FvH4_2g06430 FvH4_2g06450 FvH4_2g06480 FvH4_2g06560
malus_domestica MD05G1076400.v1.1 MD05G1076500.v1.1 MD05G1078900.v1.1 MD05G1191000.v1.1 MD05G1191100.v1.1 MD08G1226300.v1.1 MD10G1091000.v1.1 MD10G1091200.v1.1 MD10G1091400.v1.1 MD10G1091600.v1.1 MD10G1091900.v1.1
prunus_persica Prupe.8G120800_v2.0.a1 Prupe.8G121100_v2.0.a1 Prupe.8G121200_v2.0.a1 Prupe.8G121300_v2.0.a1 Prupe.8G121400_v2.0.a1 Prupe.8G121500_v2.0.a1 Prupe.8G121600_v2.0.a1 Prupe.8G121700_v2.0.a1 Prupe.8G121900_v2.0.a1 Prupe.8G122000_v2.0.a1 Prupe.I000800_v2.0.a1
pyrus_communis pycom05g07040 pycom05g17560 pycom05g17680 pycom05g17760 pycom10g07450 pycom10g07470 pycom10g07550
rosa_chinensis RchiOBHm_Chr6g0258271 RchiOBHm_Chr6g0258281 RchiOBHm_Chr6g0258291 RchiOBHm_Chr6g0258311 RchiOBHm_Chr6g0258321 RchiOBHm_Chr6g0258501
rosa_laevigata RLG00000014606 RLG00000014621 RLG00000014622 RLG00000014624 RLG00000014625 RLG00000014627 RLG00000014629 RLG00000014633 RLG00000014635
rosa_multiflora Rmu_co8014592.1_g000001 Rmu_co8366243.1_g000001 Rmu_sc0001663.1_g000004 Rmu_sc0005877.1_g000001 Rmu_sc0005877.1_g000006 Rmu_sc0005877.1_g000007 Rmu_sc0007367.1_g000009 Rmu_sc0007367.1_g000019 Rmu_sc0010616.1_g000022 Rmu_sc0010616.1_g000023 Rmu_ssc0000213.1_g000009
rosa_roxburghii Rroxscaffold_178G00437230 Rroxscaffold_178G00437250 Rroxscaffold_178G00437280 Rroxscaffold_178G00437320 Rroxscaffold_178G00437340 Rroxscaffold_178G00437350 Rroxscaffold_178G00437480 Rroxscaffold_7G00205390 Rroxscaffold_7G00205410 Rroxscaffold_7G00205450 Rroxscaffold_7G00205490 Rroxscaffold_7G00205510 Rroxscaffold_7G00205520 Rroxscaffold_7G00205670 Rroxscaffold_7G00205730
rosa_rugosa Rorug05G0579800 Rorug05G0580500 Rorug05G0580600 Rorug05G0580700 Rorug05G0580900 Rorug05G0581000 Rorug05G0581900
rosa_samantha Rh6CG084800 Rh6CG085100 Rh6CG085200 Rh6CG085400 Rh6CG085500 Rh6CG085600 Rh6CG085700 Rh6CG086900
rosa_wichuraiana Rw6G008300 Rw6G008310 Rw6G008360 Rw6G008370 Rw6G008380 Rw6G008390 Rw6G008430 Rw6G008440 Rw6G008530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 579
AcsI RAATTY 2 cut(s) 343, 415
AdeI CACNNNGTG 1 cut(s) 571
AfaI GTAC 1 cut(s) 79
AfiI CCNNNNNNNGG 3 cut(s) 326, 446, 610
AgsI TTSAA 3 cut(s) 172, 473, 694
AhlI ACTAGT 1 cut(s) 551
AjnI CCWGG 1 cut(s) 441
AluBI AGCT 4 cut(s) 104, 211, 301, 625
AluI AGCT 4 cut(s) 104, 211, 301, 625
Alw26I GTCTC 2 cut(s) 396, 500
AoxI GGCC 1 cut(s) 656
ApeKI GCWGC 7 cut(s) 83, 194, 208, 211, 224, 330, 622
ApoI RAATTY 2 cut(s) 343, 415
AspLEI GCGC 1 cut(s) 579
AspS9I GGNCC 1 cut(s) 656
AsuHPI GGTGA 2 cut(s) 170, 450
BbsI GAAGAC 1 cut(s) 388
BbvI GCAGC 7 cut(s) 70, 198, 206, 220, 236, 317, 634
BccI CCATC 2 cut(s) 344, 414
BciT130I CCWGG 1 cut(s) 443
BcoDI GTCTC 2 cut(s) 396, 500
BcuI ACTAGT 1 cut(s) 551
BfaI CTAG 2 cut(s) 386, 552
BfmI CTRYAG 1 cut(s) 192
BglI GCCNNNNNGGC 1 cut(s) 664
BisI GCNGC 7 cut(s) 84, 195, 209, 212, 225, 331, 623
BlsI GCNGC 7 cut(s) 85, 196, 210, 213, 226, 332, 624
Bme1390I CCNGG 1 cut(s) 443
BmgT120I GGNCC 1 cut(s) 656
BmiI GGNNCC 1 cut(s) 657
BmrFI CCNGG 1 cut(s) 443
BmsI GCATC 1 cut(s) 211
BpiI GAAGAC 1 cut(s) 388
BpuEI CTTGAG 1 cut(s) 320
BsaI GGTCTC 2 cut(s) 396, 500
BsaJI CCNNGG 2 cut(s) 441, 461
Bsc4I CCNNNNNNNGG 3 cut(s) 326, 446, 610
Bse1I ACTGG 1 cut(s) 659
BseBI CCWGG 1 cut(s) 443
BseDI CCNNGG 2 cut(s) 441, 461
BseLI CCNNNNNNNGG 3 cut(s) 326, 446, 610
BseMII CTCAG 1 cut(s) 511
BseNI ACTGG 1 cut(s) 659
BseXI GCAGC 7 cut(s) 70, 198, 206, 220, 236, 317, 634
Bsh1236I CGCG 1 cut(s) 579
BshFI GGCC 1 cut(s) 658
BslI CCNNNNNNNGG 3 cut(s) 326, 446, 610
BsmAI GTCTC 2 cut(s) 396, 500
BsmI GAATGC 1 cut(s) 512
BsnI GGCC 1 cut(s) 658
Bso31I GGTCTC 2 cut(s) 396, 500
BspANI GGCC 1 cut(s) 658
BspCNI CTCAG 1 cut(s) 510
BspFNI CGCG 1 cut(s) 579
BspLI GGNNCC 1 cut(s) 657
BspMAI CTGCAG 1 cut(s) 196
BspTNI GGTCTC 2 cut(s) 396, 500
BsrI ACTGG 1 cut(s) 659
BssECI CCNNGG 2 cut(s) 441, 461
BssT1I CCWWGG 1 cut(s) 461
Bst2UI CCWGG 1 cut(s) 443
Bst4CI ACNGT 1 cut(s) 30
Bst6I CTCTTC 1 cut(s) 268
BstAPI GCANNNNNTGC 1 cut(s) 230
BstDEI CTNAG 2 cut(s) 497, 626
BstENI CCTNNNNNAGG 1 cut(s) 608
BstFNI CGCG 1 cut(s) 579
BstHHI GCGC 1 cut(s) 579
BstMAI GTCTC 2 cut(s) 396, 500
BstMWI GCNNNNNNNGC 3 cut(s) 230, 298, 664
BstNI CCWGG 1 cut(s) 443
BstSCI CCNGG 1 cut(s) 441
BstSFI CTRYAG 1 cut(s) 192
BstUI CGCG 1 cut(s) 579
BstV1I GCAGC 7 cut(s) 70, 198, 206, 220, 236, 317, 634
BstV2I GAAGAC 1 cut(s) 388
BsuRI GGCC 1 cut(s) 658
BtgZI GCGATG 1 cut(s) 584
BtsIMutI CAGTG 2 cut(s) 35, 680
CfoI GCGC 1 cut(s) 579
Cfr13I GGNCC 1 cut(s) 656
Csp6I GTAC 1 cut(s) 78
CviAII CATG 5 cut(s) 67, 155, 305, 491, 589
CviQI GTAC 1 cut(s) 78
DdeI CTNAG 2 cut(s) 497, 626
DraIII CACNNNGTG 1 cut(s) 571
Eam1104I CTCTTC 1 cut(s) 268
EarI CTCTTC 1 cut(s) 268
Eco130I CCWWGG 1 cut(s) 461
Eco31I GGTCTC 2 cut(s) 396, 500
EcoNI CCTNNNNNAGG 1 cut(s) 608
EcoRII CCWGG 1 cut(s) 441
EcoT14I CCWWGG 1 cut(s) 461
ErhI CCWWGG 1 cut(s) 461
FaeI CATG 5 cut(s) 70, 158, 308, 494, 592
FaiI YATR 9 cut(s) 68, 156, 306, 379, 431, 492, 513, 590, 686
FalI AAGNNNNNCTT 2 cut(s) 619, 651
FatI CATG 5 cut(s) 66, 154, 304, 490, 588
Fnu4HI GCNGC 7 cut(s) 84, 195, 209, 212, 225, 331, 623
Fsp4HI GCNGC 7 cut(s) 84, 195, 209, 212, 225, 331, 623
FspBI CTAG 2 cut(s) 386, 552
GlaI GCGC 1 cut(s) 578
GluI GCNGC 7 cut(s) 84, 195, 209, 212, 225, 331, 623
HaeIII GGCC 1 cut(s) 658
HhaI GCGC 1 cut(s) 579
Hin1II CATG 5 cut(s) 70, 158, 308, 494, 592
Hin6I GCGC 1 cut(s) 577
HinP1I GCGC 1 cut(s) 577
HincII GTYRAC 2 cut(s) 13, 632
HindII GTYRAC 2 cut(s) 13, 632
HindIII AAGCTT 1 cut(s) 102
HinfI GANTC 4 cut(s) 34, 142, 473, 650
HphI GGTGA 2 cut(s) 170, 450
Hpy166II GTNNAC 4 cut(s) 13, 251, 549, 632
Hpy188I TCNGA 2 cut(s) 401, 505
Hpy188III TCNNGA 2 cut(s) 310, 337
Hpy8I GTNNAC 4 cut(s) 13, 251, 549, 632
HpyAV CCTTC 1 cut(s) 166
HpyCH4III ACNGT 1 cut(s) 30
HpyF10VI GCNNNNNNNGC 3 cut(s) 230, 298, 664
HpyF3I CTNAG 2 cut(s) 497, 626
Hsp92II CATG 5 cut(s) 70, 158, 308, 494, 592
HspAI GCGC 1 cut(s) 577
LmnI GCTCC 1 cut(s) 298
LpnPI CCDG 7 cut(s) 39, 59, 72, 295, 428, 455, 672
Lsp1109I GCAGC 7 cut(s) 70, 198, 206, 220, 236, 317, 634
LweI GCATC 1 cut(s) 211
MaeI CTAG 2 cut(s) 386, 552
MaeIII GTNAC 2 cut(s) 92, 584
MboII GAAGA 3 cut(s) 137, 285, 388
MfeI CAATTG 1 cut(s) 694
MluCI AATT 8 cut(s) 41, 182, 215, 322, 343, 415, 533, 694
MlyI GAGTC 1 cut(s) 659
MnlI CCTC 5 cut(s) 74, 172, 327, 344, 416
MseI TTAA 2 cut(s) 366, 528
MslI CAYNNNNRTG 1 cut(s) 153
MspA1I CMGCKG 1 cut(s) 211
MspR9I CCNGG 1 cut(s) 443
MunI CAATTG 1 cut(s) 694
Mva1269I GAATGC 1 cut(s) 512
MvaI CCWGG 1 cut(s) 443
MvnI CGCG 1 cut(s) 579
MwoI GCNNNNNNNGC 3 cut(s) 230, 298, 664
NlaIII CATG 5 cut(s) 70, 158, 308, 494, 592
NlaIV GGNNCC 1 cut(s) 657
NmuCI GTSAC 1 cut(s) 92
PctI GAATGC 1 cut(s) 512
PfeI GAWTC 3 cut(s) 34, 142, 473
PkrI GCNGC 7 cut(s) 85, 196, 210, 213, 226, 332, 624
PleI GAGTC 1 cut(s) 658
PpsI GAGTC 1 cut(s) 658
Psp6I CCWGG 1 cut(s) 441
PspGI CCWGG 1 cut(s) 441
PspN4I GGNNCC 1 cut(s) 657
PspPI GGNCC 1 cut(s) 656
PstI CTGCAG 1 cut(s) 196
PvuII CAGCTG 1 cut(s) 211
RsaI GTAC 1 cut(s) 79
RsaNI GTAC 1 cut(s) 78
RseI CAYNNNNRTG 1 cut(s) 153
SaqAI TTAA 2 cut(s) 366, 528
SatI GCNGC 7 cut(s) 84, 195, 209, 212, 225, 331, 623
Sau96I GGNCC 1 cut(s) 656
SchI GAGTC 1 cut(s) 659
ScrFI CCNGG 1 cut(s) 443
SfaNI GCATC 1 cut(s) 211
SfcI CTRYAG 1 cut(s) 192
SmiMI CAYNNNNRTG 1 cut(s) 153
SmlI CTYRAG 1 cut(s) 335
SmoI CTYRAG 1 cut(s) 335
SpeI ACTAGT 1 cut(s) 551
Sse9I AATT 8 cut(s) 41, 182, 215, 322, 343, 415, 533, 694
SspMI CTAG 2 cut(s) 386, 552
StyD4I CCNGG 1 cut(s) 441
StyI CCWWGG 1 cut(s) 461
TaaI ACNGT 1 cut(s) 30
TasI AATT 8 cut(s) 41, 182, 215, 322, 343, 415, 533, 694
TfiI GAWTC 3 cut(s) 34, 142, 473
Tru1I TTAA 2 cut(s) 366, 528
Tru9I TTAA 2 cut(s) 366, 528
TscAI CASTG 2 cut(s) 35, 680
TseFI GTSAC 1 cut(s) 92
TseI GCWGC 7 cut(s) 83, 194, 208, 211, 224, 330, 622
Tsp45I GTSAC 1 cut(s) 92
TspDTI ATGAA 5 cut(s) 137, 293, 297, 356, 537
TspRI CASTG 2 cut(s) 35, 680
XagI CCTNNNNNAGG 1 cut(s) 608
XapI RAATTY 2 cut(s) 343, 415
XspI CTAG 2 cut(s) 386, 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.