AT3G48700

Carboxylesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000397
Physical Location & Seq
Reverse (-)
18038648 .. 18039879
1232 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G48700.1

Sequence Viewer

Length: 990 bp
ATGGATTCCGAGATCGCCGCCGACTACTCTCCAATGCTCATAATCTACAAGAGTGGCCGCATTGAGCGACTCGTGGGTGAAACCACCGTGCCACCTTCTTCCAACCCACAAAACGGAGTCGTTTCCAAGGACGTCGTTTATTCTCCTGACAACAACCTCTCCCTCCGCATTTACCTCCCGGAGAAAGCCGCCACCGCCGAGACCGAAGCCTCTGTAAAACTCCCTCTCCTCGTCTACTTCCACGGCGGAGGATTCCTCGTTGAAACCGCTTTCTCCCCGACTTACCACACTTTCCTCACGGCGGCTGTCTCAGCGTCAGACTGTGTAGCGGTCTCCGTGGATTACCGACGTGCACCGGAGCATCCGATTCCTACTTCTTACGATGATTCTTGGACAGCTCTCAAATGGGTTTTCTCCCACATCGCCGGATCTGGCTCAGAAGATTGGTTGAACAAACACGCCGACTTCAGCAAAGTGTTCCTCGCCGGAGATAGCGCCGGAGCGAACATAACGCATCACATGACGATGAAAGCTGCGAAAGATAAACTCAGTCCCGAGTCTTTGAACGAGTCAGGAATCTCTGGAATCATCTTAGTTCATCCTTATTTCTGGTCAAAAACCCCAGTCGACGACAAGGAGACGACGGATGTAGCAATAAGGACGTGGATCGAGTCGGTCTGGACGTTGGCTAGTCCCAATAGCAAAGATGGATCAGATGATCCATTCATCAACGTGGTGCAATCAGAGTCGGTGGATTTGTCCGGGTTGGGTTGTGGTAAGGTTTTGGTAATGGTGGCTGAGAAAGACGCGTTGGTGAGGCAAGGTTGGGGTTACTGGGAGAAGCTTGGTAAGAGCCGTTGGAACGGAGAAGTACTGGACGTGGTGGAGACTAAGGGAGAAGGTCATGTTTTTCATTTGAGGGATCCTAATTCTGAAAAGGCTCATGAACTCGTGCACAGATTCGCAGGGTTTATCAAGGGAGACAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0009056 GO:0016787 GO:0016788 GO:0044424 GO:0044444 GO:0044464 GO:0052689
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

329

Amino Acids

36.1

Weight (kDa)

5.36

Isoelectric Point (pI)

35.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COesterase PF00135 28 - 192 2.5e-10 Carboxylesterase family
BD-FAE PF20434 69 - 184 1.8e-10 BD-FAE
Abhydrolase_3 PF07859 77 - 305 1.2e-55 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000397)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48690 AT3G48700
fragaria_vesca FvH4_2g06400 FvH4_2g06430 FvH4_2g06450 FvH4_2g06480 FvH4_2g06560
malus_domestica MD05G1076400.v1.1 MD05G1076500.v1.1 MD05G1078900.v1.1 MD05G1191000.v1.1 MD05G1191100.v1.1 MD08G1226300.v1.1 MD10G1091000.v1.1 MD10G1091200.v1.1 MD10G1091400.v1.1 MD10G1091600.v1.1 MD10G1091900.v1.1
prunus_persica Prupe.8G120800_v2.0.a1 Prupe.8G121100_v2.0.a1 Prupe.8G121200_v2.0.a1 Prupe.8G121300_v2.0.a1 Prupe.8G121400_v2.0.a1 Prupe.8G121500_v2.0.a1 Prupe.8G121600_v2.0.a1 Prupe.8G121700_v2.0.a1 Prupe.8G121900_v2.0.a1 Prupe.8G122000_v2.0.a1 Prupe.I000800_v2.0.a1
pyrus_communis pycom05g07040 pycom05g17560 pycom05g17680 pycom05g17760 pycom10g07450 pycom10g07470 pycom10g07550
rosa_chinensis RchiOBHm_Chr6g0258271 RchiOBHm_Chr6g0258281 RchiOBHm_Chr6g0258291 RchiOBHm_Chr6g0258311 RchiOBHm_Chr6g0258321 RchiOBHm_Chr6g0258501
rosa_laevigata RLG00000014606 RLG00000014621 RLG00000014622 RLG00000014624 RLG00000014625 RLG00000014627 RLG00000014629 RLG00000014633 RLG00000014635
rosa_multiflora Rmu_co8014592.1_g000001 Rmu_co8366243.1_g000001 Rmu_sc0001663.1_g000004 Rmu_sc0005877.1_g000001 Rmu_sc0005877.1_g000006 Rmu_sc0005877.1_g000007 Rmu_sc0007367.1_g000009 Rmu_sc0007367.1_g000019 Rmu_sc0010616.1_g000022 Rmu_sc0010616.1_g000023 Rmu_ssc0000213.1_g000009
rosa_roxburghii Rroxscaffold_178G00437230 Rroxscaffold_178G00437250 Rroxscaffold_178G00437280 Rroxscaffold_178G00437320 Rroxscaffold_178G00437340 Rroxscaffold_178G00437350 Rroxscaffold_178G00437480 Rroxscaffold_7G00205390 Rroxscaffold_7G00205410 Rroxscaffold_7G00205450 Rroxscaffold_7G00205490 Rroxscaffold_7G00205510 Rroxscaffold_7G00205520 Rroxscaffold_7G00205670 Rroxscaffold_7G00205730
rosa_rugosa Rorug05G0579800 Rorug05G0580500 Rorug05G0580600 Rorug05G0580700 Rorug05G0580900 Rorug05G0581000 Rorug05G0581900
rosa_samantha Rh6CG084800 Rh6CG085100 Rh6CG085200 Rh6CG085400 Rh6CG085500 Rh6CG085600 Rh6CG085700 Rh6CG086900
rosa_wichuraiana Rw6G008300 Rw6G008310 Rw6G008360 Rw6G008370 Rw6G008380 Rw6G008390 Rw6G008430 Rw6G008440 Rw6G008530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 135
AccI GTMKAC 2 cut(s) 234, 627
AccII CGCG 1 cut(s) 809
AciI CCGC 9 cut(s) 18, 58, 166, 189, 195, 246, 267, 302, 329
AclWI GGATC 6 cut(s) 436, 674, 713, 718, 917, 930
AcoI YGGCCR 1 cut(s) 55
AcuI CTGAAG 1 cut(s) 451
AcyI GRCGYC 1 cut(s) 132
AfaI GTAC 1 cut(s) 873
AfiI CCNNNNNNNGG 2 cut(s) 113, 301
AflIII ACRYGT 1 cut(s) 807
AgsI TTSAA 3 cut(s) 263, 451, 565
AjiI CACGTC 3 cut(s) 350, 663, 880
AjuI GAANNNNNNNTTGG 2 cut(s) 794, 826
AluBI AGCT 3 cut(s) 398, 533, 844
AluI AGCT 3 cut(s) 398, 533, 844
Alw21I GWGCWC 2 cut(s) 355, 957
Alw26I GTCTC 6 cut(s) 194, 313, 337, 632, 881, 975
Alw44I GTGCAC 2 cut(s) 351, 953
AlwI GGATC 6 cut(s) 436, 674, 713, 718, 917, 930
Ama87I CYCGRG 1 cut(s) 554
AoxI GGCC 1 cut(s) 55
ApaLI GTGCAC 2 cut(s) 351, 953
ApeKI GCWGC 1 cut(s) 533
AspLEI GCGC 1 cut(s) 497
AsuC2I CCSGG 2 cut(s) 179, 763
AsuHPI GGTGA 2 cut(s) 89, 826
AvaI CYCGRG 1 cut(s) 554
BaeGI GKGCMC 2 cut(s) 355, 957
BamHI GGATCC 1 cut(s) 922
BauI CACGAG 2 cut(s) 71, 950
Bbv12I GWGCWC 2 cut(s) 355, 957
BbvI GCAGC 1 cut(s) 520
BccI CCATC 1 cut(s) 701
BceAI ACGGC 3 cut(s) 259, 315, 840
BcnI CCSGG 2 cut(s) 179, 763
BcoDI GTCTC 6 cut(s) 194, 313, 337, 632, 881, 975
BfaI CTAG 1 cut(s) 690
BfoI RGCGCY 1 cut(s) 498
BisI GCNGC 5 cut(s) 18, 58, 189, 303, 534
BlsI GCNGC 5 cut(s) 19, 59, 190, 304, 535
BmcAI AGTACT 1 cut(s) 873
Bme1390I CCNGG 2 cut(s) 179, 763
BmeT110I CYCGRG 1 cut(s) 554
BmgBI CACGTC 3 cut(s) 350, 663, 880
BmiI GGNNCC 1 cut(s) 924
BmrFI CCNGG 2 cut(s) 179, 763
BmrI ACTGGG 2 cut(s) 617, 844
BmsI GCATC 2 cut(s) 370, 523
BmuI ACTGGG 2 cut(s) 617, 844
BplI GAGNNNNNCTC 2 cut(s) 240, 272
BpuMI CCSGG 2 cut(s) 179, 763
BsaHI GRCGYC 1 cut(s) 132
BsaI GGTCTC 2 cut(s) 194, 337
BsaJI CCNNGG 3 cut(s) 126, 241, 336
BsaWI WCCGGW 1 cut(s) 355
BsaXI ACNNNNNCTCC 4 cut(s) 143, 173, 210, 240
Bsc4I CCNNNNNNNGG 2 cut(s) 113, 301
Bse1I ACTGG 3 cut(s) 623, 839, 879
BseDI CCNNGG 3 cut(s) 126, 241, 336
BseGI GGATG 3 cut(s) 361, 598, 652
BseLI CCNNNNNNNGG 2 cut(s) 113, 301
BseMII CTCAG 4 cut(s) 324, 450, 562, 789
BseNI ACTGG 3 cut(s) 623, 839, 879
BseRI GAGGAG 1 cut(s) 218
BseSI GKGCMC 2 cut(s) 355, 957
BseXI GCAGC 1 cut(s) 520
Bsh1236I CGCG 1 cut(s) 809
BshFI GGCC 1 cut(s) 57
BsiHKAI GWGCWC 2 cut(s) 355, 957
BsiHKCI CYCGRG 1 cut(s) 554
BsiSI CCGG 6 cut(s) 179, 356, 426, 486, 498, 762
BslFI GGGAC 2 cut(s) 537, 678
BslI CCNNNNNNNGG 2 cut(s) 113, 301
BsmAI GTCTC 6 cut(s) 194, 313, 337, 632, 881, 975
BsmBI CGTCTC 1 cut(s) 632
BsmFI GGGAC 2 cut(s) 537, 678
BsnI GGCC 1 cut(s) 57
Bso31I GGTCTC 2 cut(s) 194, 337
BsoBI CYCGRG 1 cut(s) 554
Bsp1286I GDGCHC 2 cut(s) 355, 957
Bsp143I GATC 6 cut(s) 12, 428, 666, 710, 718, 922
BspACI CCGC 9 cut(s) 18, 58, 166, 189, 195, 246, 267, 302, 329
BspANI GGCC 1 cut(s) 57
BspCNI CTCAG 4 cut(s) 323, 449, 561, 790
BspFNI CGCG 1 cut(s) 809
BspHI TCATGA 1 cut(s) 943
BspLI GGNNCC 1 cut(s) 924
BspPI GGATC 6 cut(s) 436, 674, 713, 718, 917, 930
BspTNI GGTCTC 2 cut(s) 194, 337
BsrI ACTGG 3 cut(s) 623, 839, 879
BssECI CCNNGG 3 cut(s) 126, 241, 336
BssMI GATC 6 cut(s) 12, 428, 666, 710, 718, 922
BssNI GRCGYC 1 cut(s) 132
BssSI CACGAG 2 cut(s) 71, 950
BssT1I CCWWGG 1 cut(s) 126
Bst2BI CACGAG 2 cut(s) 71, 950
Bst4CI ACNGT 2 cut(s) 88, 323
BstACI GRCGYC 1 cut(s) 132
BstDEI CTNAG 6 cut(s) 310, 436, 548, 592, 798, 891
BstDSI CCRYGG 2 cut(s) 241, 336
BstF5I GGATG 3 cut(s) 361, 598, 652
BstFNI CGCG 1 cut(s) 809
BstH2I RGCGCY 1 cut(s) 498
BstHHI GCGC 1 cut(s) 497
BstKTI GATC 6 cut(s) 15, 431, 669, 713, 721, 925
BstMAI GTCTC 6 cut(s) 194, 313, 337, 632, 881, 975
BstMBI GATC 6 cut(s) 12, 428, 666, 710, 718, 922
BstMWI GCNNNNNNNGC 2 cut(s) 194, 311
BstSCI CCNGG 2 cut(s) 177, 761
BstSLI GKGCMC 2 cut(s) 355, 957
BstUI CGCG 1 cut(s) 809
BstV1I GCAGC 1 cut(s) 520
BstX2I RGATCY 2 cut(s) 428, 922
BstYI RGATCY 2 cut(s) 428, 922
BsuRI GGCC 1 cut(s) 57
BtgI CCRYGG 2 cut(s) 241, 336
BtgZI GCGATG 1 cut(s) 406
BtrI CACGTC 3 cut(s) 350, 663, 880
BtsCI GGATG 3 cut(s) 361, 598, 652
CciI TCATGA 1 cut(s) 943
CfoI GCGC 1 cut(s) 497
CseI GACGC 2 cut(s) 303, 815
Csp6I GTAC 1 cut(s) 872
CviAII CATG 3 cut(s) 520, 905, 944
CviQI GTAC 1 cut(s) 872
DdeI CTNAG 6 cut(s) 310, 436, 548, 592, 798, 891
DpnI GATC 6 cut(s) 14, 430, 668, 712, 720, 924
DpnII GATC 6 cut(s) 12, 428, 666, 710, 718, 922
EaeI YGGCCR 1 cut(s) 55
EciI GGCGGA 1 cut(s) 261
Eco130I CCWWGG 1 cut(s) 126
Eco31I GGTCTC 2 cut(s) 194, 337
Eco57I CTGAAG 1 cut(s) 451
Eco88I CYCGRG 1 cut(s) 554
EcoT14I CCWWGG 1 cut(s) 126
ErhI CCWWGG 1 cut(s) 126
Esp3I CGTCTC 1 cut(s) 632
FaeI CATG 3 cut(s) 523, 908, 947
FaiI YATR 5 cut(s) 41, 509, 521, 906, 945
FaqI GGGAC 2 cut(s) 537, 678
FatI CATG 3 cut(s) 519, 904, 943
FblI GTMKAC 2 cut(s) 234, 627
Fnu4HI GCNGC 5 cut(s) 18, 58, 189, 303, 534
FokI GGATG 3 cut(s) 348, 585, 659
Fsp4HI GCNGC 5 cut(s) 18, 58, 189, 303, 534
FspBI CTAG 1 cut(s) 690
GlaI GCGC 1 cut(s) 496
GluI GCNGC 5 cut(s) 18, 58, 189, 303, 534
HaeII RGCGCY 1 cut(s) 498
HaeIII GGCC 1 cut(s) 57
HapII CCGG 6 cut(s) 179, 356, 426, 486, 498, 762
HgaI GACGC 2 cut(s) 303, 815
HhaI GCGC 1 cut(s) 497
Hin1I GRCGYC 1 cut(s) 132
Hin1II CATG 3 cut(s) 523, 908, 947
Hin6I GCGC 1 cut(s) 495
HinP1I GCGC 1 cut(s) 495
HincII GTYRAC 1 cut(s) 628
HindII GTYRAC 1 cut(s) 628
HindIII AAGCTT 1 cut(s) 842
HpaII CCGG 6 cut(s) 179, 356, 426, 486, 498, 762
HphI GGTGA 2 cut(s) 89, 826
Hpy166II GTNNAC 4 cut(s) 235, 353, 628, 955
Hpy188I TCNGA 7 cut(s) 10, 319, 366, 439, 715, 745, 934
Hpy188III TCNNGA 6 cut(s) 146, 554, 573, 582, 679, 944
Hpy8I GTNNAC 4 cut(s) 235, 353, 628, 955
Hpy99I CGWCG 4 cut(s) 137, 351, 632, 646
HpyAV CCTTC 2 cut(s) 105, 893
HpyCH4III ACNGT 2 cut(s) 88, 323
HpyCH4IV ACGT 6 cut(s) 132, 349, 662, 683, 732, 879
HpyCH4V TGCA 3 cut(s) 353, 739, 955
HpyF10VI GCNNNNNNNGC 2 cut(s) 194, 311
HpyF3I CTNAG 6 cut(s) 310, 436, 548, 592, 798, 891
HpySE526I ACGT 6 cut(s) 132, 349, 662, 683, 732, 879
Hsp92I GRCGYC 1 cut(s) 132
Hsp92II CATG 3 cut(s) 523, 908, 947
HspAI GCGC 1 cut(s) 495
Kzo9I GATC 6 cut(s) 12, 428, 666, 710, 718, 922
LmnI GCTCC 2 cut(s) 358, 500
Lsp1109I GCAGC 1 cut(s) 520
LweI GCATC 2 cut(s) 370, 523
MaeI CTAG 1 cut(s) 690
MaeII ACGT 6 cut(s) 132, 349, 662, 683, 732, 879
MaeIII GTNAC 1 cut(s) 830
MalI GATC 6 cut(s) 14, 430, 668, 712, 720, 924
MboI GATC 6 cut(s) 12, 428, 666, 710, 718, 922
MboII GAAGA 2 cut(s) 90, 452
MflI RGATCY 2 cut(s) 428, 922
MhlI GDGCHC 2 cut(s) 355, 957
MluCI AATT 1 cut(s) 928
MluI ACGCGT 1 cut(s) 807
MlyI GAGTC 6 cut(s) 63, 126, 566, 578, 680, 755
MmeI TCCRAC 2 cut(s) 126, 839
MslI CAYNNNNRTG 2 cut(s) 524, 731
MspI CCGG 6 cut(s) 179, 356, 426, 486, 498, 762
MspR9I CCNGG 2 cut(s) 179, 763
MvnI CGCG 1 cut(s) 809
MwoI GCNNNNNNNGC 2 cut(s) 194, 311
NciI CCSGG 2 cut(s) 179, 763
NdeII GATC 6 cut(s) 12, 428, 666, 710, 718, 922
NlaIII CATG 3 cut(s) 523, 908, 947
NlaIV GGNNCC 1 cut(s) 924
NmeAIII GCCGAG 1 cut(s) 223
PagI TCATGA 1 cut(s) 943
PcsI WCGNNNNNNNCGW 1 cut(s) 680
PfeI GAWTC 7 cut(s) 5, 252, 367, 386, 576, 585, 960
PfoI TCCNGGA 1 cut(s) 177
PkrI GCNGC 5 cut(s) 19, 59, 190, 304, 535
PleI GAGTC 6 cut(s) 63, 125, 565, 577, 679, 754
PpsI GAGTC 6 cut(s) 63, 125, 565, 577, 679, 754
PspN4I GGNNCC 1 cut(s) 924
PsuI RGATCY 2 cut(s) 428, 922
RsaI GTAC 1 cut(s) 873
RsaNI GTAC 1 cut(s) 872
RseI CAYNNNNRTG 2 cut(s) 524, 731
SalI GTCGAC 1 cut(s) 626
SatI GCNGC 5 cut(s) 18, 58, 189, 303, 534
Sau3AI GATC 6 cut(s) 12, 428, 666, 710, 718, 922
ScaI AGTACT 1 cut(s) 873
SchI GAGTC 6 cut(s) 63, 126, 566, 578, 680, 755
ScrFI CCNGG 2 cut(s) 179, 763
SduI GDGCHC 2 cut(s) 355, 957
SfaNI GCATC 2 cut(s) 370, 523
SmiMI CAYNNNNRTG 2 cut(s) 524, 731
Sse9I AATT 1 cut(s) 928
SsiI CCGC 9 cut(s) 18, 58, 166, 189, 195, 246, 267, 302, 329
SspMI CTAG 1 cut(s) 690
StyD4I CCNGG 2 cut(s) 177, 761
StyI CCWWGG 1 cut(s) 126
TaaI ACNGT 2 cut(s) 88, 323
TaiI ACGT 6 cut(s) 135, 352, 665, 686, 735, 882
TaqI TCGA 2 cut(s) 627, 669
TaqII GACCGA 2 cut(s) 218, 664
TasI AATT 1 cut(s) 928
TatI WGTACW 1 cut(s) 871
TauI GCSGC 4 cut(s) 20, 60, 191, 305
TfiI GAWTC 7 cut(s) 5, 252, 367, 386, 576, 585, 960
TseI GCWGC 1 cut(s) 533
TspDTI ATGAA 5 cut(s) 542, 587, 715, 902, 960
TspGWI ACGGA 4 cut(s) 129, 325, 659, 879
VneI GTGCAC 2 cut(s) 351, 953
XmiI GTMKAC 2 cut(s) 234, 627
XspI CTAG 1 cut(s) 690
ZraI GACGTC 1 cut(s) 133
ZrmI AGTACT 1 cut(s) 873
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.