pycom05g17760

Carboxylesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0000397
Physical Location & Seq
Reverse (-)
20922146 .. 20923348
1203 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g17760.1

Sequence Viewer

Length: 525 bp
ATGAGCAATGAAGAACTGTCTTATGACTTTTCTCCAATGATCAAAGTATACAAAGACGGTCGAGTCGAGAGACTCCCAGGCACAGCCACAGTTCCTCCATCAACACAACCCGAAACCGGAGTGCAATCCAAAGACATTGTCATCTCCGAACAACCAGCAATATCTCTAAGGCTCTACATCCCCAAATCCGCTGCCACCAAACTCCCTCTTCTTGTTTACTTTCACGGCGGTGGCTTCTGCATCCAAAGCGCATCCTCACCCACGTATCACAACTACCTTAATTCCTTAGTCTCCGAGGTCAATGTTGTTGCCGTCTCTGTTGAGTACAGGCTTGCCTCGGAGCACCCAATCCCAGCTGCCTACGACGATTCATGGGCTGCTCTCAAATGGGTGGCTTCCCATTTTGATGGAAAGCGAAAAGGCGGTGAAGAAGAAGATGAAGATTGGATAACTAGCTATGCGGATTCGCAGCGCGTGTTCTTCGCTGGGGACAGTGCTGGAGTCTTCTTCAAGGAGAGCGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

175

Amino Acids

19.19

Weight (kDa)

4.94

Isoelectric Point (pI)

51.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COesterase PF00135 53 - 112 2.9e-09 Carboxylesterase family
BD-FAE PF20434 57 - 134 8.9e-12 BD-FAE
Abhydrolase_3 PF07859 71 - 167 1.3e-29 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000397)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48690 AT3G48700
fragaria_vesca FvH4_2g06400 FvH4_2g06430 FvH4_2g06450 FvH4_2g06480 FvH4_2g06560
malus_domestica MD05G1076400.v1.1 MD05G1076500.v1.1 MD05G1078900.v1.1 MD05G1191000.v1.1 MD05G1191100.v1.1 MD08G1226300.v1.1 MD10G1091000.v1.1 MD10G1091200.v1.1 MD10G1091400.v1.1 MD10G1091600.v1.1 MD10G1091900.v1.1
prunus_persica Prupe.8G120800_v2.0.a1 Prupe.8G121100_v2.0.a1 Prupe.8G121200_v2.0.a1 Prupe.8G121300_v2.0.a1 Prupe.8G121400_v2.0.a1 Prupe.8G121500_v2.0.a1 Prupe.8G121600_v2.0.a1 Prupe.8G121700_v2.0.a1 Prupe.8G121900_v2.0.a1 Prupe.8G122000_v2.0.a1 Prupe.I000800_v2.0.a1
pyrus_communis pycom05g07040 pycom05g17560 pycom05g17680 pycom05g17760 pycom10g07450 pycom10g07470 pycom10g07550
rosa_chinensis RchiOBHm_Chr6g0258271 RchiOBHm_Chr6g0258281 RchiOBHm_Chr6g0258291 RchiOBHm_Chr6g0258311 RchiOBHm_Chr6g0258321 RchiOBHm_Chr6g0258501
rosa_laevigata RLG00000014606 RLG00000014621 RLG00000014622 RLG00000014624 RLG00000014625 RLG00000014627 RLG00000014629 RLG00000014633 RLG00000014635
rosa_multiflora Rmu_co8014592.1_g000001 Rmu_co8366243.1_g000001 Rmu_sc0001663.1_g000004 Rmu_sc0005877.1_g000001 Rmu_sc0005877.1_g000006 Rmu_sc0005877.1_g000007 Rmu_sc0007367.1_g000009 Rmu_sc0007367.1_g000019 Rmu_sc0010616.1_g000022 Rmu_sc0010616.1_g000023 Rmu_ssc0000213.1_g000009
rosa_roxburghii Rroxscaffold_178G00437230 Rroxscaffold_178G00437250 Rroxscaffold_178G00437280 Rroxscaffold_178G00437320 Rroxscaffold_178G00437340 Rroxscaffold_178G00437350 Rroxscaffold_178G00437480 Rroxscaffold_7G00205390 Rroxscaffold_7G00205410 Rroxscaffold_7G00205450 Rroxscaffold_7G00205490 Rroxscaffold_7G00205510 Rroxscaffold_7G00205520 Rroxscaffold_7G00205670 Rroxscaffold_7G00205730
rosa_rugosa Rorug05G0579800 Rorug05G0580500 Rorug05G0580600 Rorug05G0580700 Rorug05G0580900 Rorug05G0581000 Rorug05G0581900
rosa_samantha Rh6CG084800 Rh6CG085100 Rh6CG085200 Rh6CG085400 Rh6CG085500 Rh6CG085600 Rh6CG085700 Rh6CG086900
rosa_wichuraiana Rw6G008300 Rw6G008310 Rw6G008360 Rw6G008370 Rw6G008380 Rw6G008390 Rw6G008430 Rw6G008440 Rw6G008530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 62
AccI GTMKAC 1 cut(s) 48
AccII CGCG 1 cut(s) 474
AciI CCGC 4 cut(s) 189, 228, 423, 461
AfaI GTAC 1 cut(s) 326
AfiI CCNNNNNNNGG 1 cut(s) 116
AgsI TTSAA 1 cut(s) 511
AjnI CCWGG 1 cut(s) 76
AleI CACNNNNGTG 1 cut(s) 228
AluBI AGCT 2 cut(s) 356, 456
AluI AGCT 2 cut(s) 356, 456
Alw21I GWGCWC 1 cut(s) 345
Alw26I GTCTC 3 cut(s) 64, 295, 319
ApeKI GCWGC 4 cut(s) 191, 356, 377, 469
ArsI GACNNNNNNTTYG 2 cut(s) 123, 155
AspLEI GCGC 2 cut(s) 251, 474
AsuHPI GGTGA 2 cut(s) 249, 437
BaeI ACNNNNGTAYC 2 cut(s) 248, 281
BbsI GAAGAC 1 cut(s) 496
Bbv12I GWGCWC 1 cut(s) 345
BbvI GCAGC 4 cut(s) 178, 343, 364, 481
BccI CCATC 2 cut(s) 106, 401
BceAI ACGGC 2 cut(s) 241, 296
BciT130I CCWGG 1 cut(s) 78
BclI TGATCA 1 cut(s) 39
BcoDI GTCTC 3 cut(s) 64, 295, 319
BfaI CTAG 1 cut(s) 453
BisI GCNGC 4 cut(s) 192, 357, 378, 470
BlsI GCNGC 4 cut(s) 193, 358, 379, 471
Bme1390I CCNGG 1 cut(s) 78
BmrFI CCNGG 1 cut(s) 78
BmsI GCATC 2 cut(s) 249, 260
BpiI GAAGAC 1 cut(s) 496
BpmI CTGGAG 1 cut(s) 519
BsaAI YACGTR 1 cut(s) 264
BsaJI CCNNGG 3 cut(s) 76, 294, 336
BsaWI WCCGGW 1 cut(s) 116
BsaXI ACNNNNNCTCC 2 cut(s) 79, 109
Bsc4I CCNNNNNNNGG 1 cut(s) 116
Bse3DI GCAATG 1 cut(s) 13
BseBI CCWGG 1 cut(s) 78
BseDI CCNNGG 3 cut(s) 76, 294, 336
BseGI GGATG 3 cut(s) 177, 240, 251
BseLI CCNNNNNNNGG 1 cut(s) 116
BseMI GCAATG 1 cut(s) 13
BseXI GCAGC 4 cut(s) 178, 343, 364, 481
BseYI CCCAGC 2 cut(s) 352, 485
Bsh1236I CGCG 1 cut(s) 474
Bsh1285I CGRYCG 1 cut(s) 61
BsiEI CGRYCG 1 cut(s) 61
BsiHKAI GWGCWC 1 cut(s) 345
BsiSI CCGG 1 cut(s) 117
BslFI GGGAC 1 cut(s) 503
BslI CCNNNNNNNGG 1 cut(s) 116
BsmAI GTCTC 3 cut(s) 64, 295, 319
BsmBI CGTCTC 1 cut(s) 319
BsmFI GGGAC 1 cut(s) 503
Bsp1286I GDGCHC 1 cut(s) 345
Bsp143I GATC 1 cut(s) 39
BspACI CCGC 4 cut(s) 189, 228, 423, 461
BspFNI CGCG 1 cut(s) 474
BsrDI GCAATG 1 cut(s) 13
BssECI CCNNGG 3 cut(s) 76, 294, 336
BssMI GATC 1 cut(s) 39
BssNAI GTATAC 1 cut(s) 49
Bst1107I GTATAC 1 cut(s) 49
Bst2UI CCWGG 1 cut(s) 78
Bst4CI ACNGT 4 cut(s) 18, 59, 91, 494
Bst6I CTCTTC 1 cut(s) 213
BstBAI YACGTR 1 cut(s) 264
BstC8I GCNNGC 1 cut(s) 333
BstDEI CTNAG 2 cut(s) 167, 286
BstF5I GGATG 3 cut(s) 177, 240, 251
BstFNI CGCG 1 cut(s) 474
BstHHI GCGC 2 cut(s) 251, 474
BstKTI GATC 1 cut(s) 42
BstMAI GTCTC 3 cut(s) 64, 295, 319
BstMBI GATC 1 cut(s) 39
BstMCI CGRYCG 1 cut(s) 61
BstMWI GCNNNNNNNGC 1 cut(s) 246
BstNI CCWGG 1 cut(s) 78
BstSCI CCNGG 1 cut(s) 76
BstUI CGCG 1 cut(s) 474
BstV1I GCAGC 4 cut(s) 178, 343, 364, 481
BstV2I GAAGAC 1 cut(s) 496
BstXI CCANNNNNNTGG 1 cut(s) 407
BstZ17I GTATAC 1 cut(s) 49
BtsCI GGATG 3 cut(s) 177, 240, 251
BtsIMutI CAGTG 1 cut(s) 499
Cac8I GCNNGC 1 cut(s) 333
CfoI GCGC 2 cut(s) 251, 474
Csp6I GTAC 1 cut(s) 325
CviAII CATG 1 cut(s) 372
CviJI RGCY 8 cut(s) 86, 172, 234, 331, 356, 377, 395, 456
CviKI_1 RGCY 8 cut(s) 86, 172, 234, 331, 356, 377, 395, 456
CviQI GTAC 1 cut(s) 325
DdeI CTNAG 2 cut(s) 167, 286
DpnI GATC 1 cut(s) 41
DpnII GATC 1 cut(s) 39
DrdI GACNNNNNNGTC 1 cut(s) 62
DseDI GACNNNNNNGTC 1 cut(s) 62
Eam1104I CTCTTC 1 cut(s) 213
EarI CTCTTC 1 cut(s) 213
EcoRII CCWGG 1 cut(s) 76
Esp3I CGTCTC 1 cut(s) 319
FaeI CATG 1 cut(s) 375
FaiI YATR 5 cut(s) 24, 49, 373, 459, 523
FaqI GGGAC 1 cut(s) 503
FatI CATG 1 cut(s) 371
FbaI TGATCA 1 cut(s) 39
FblI GTMKAC 1 cut(s) 48
Fnu4HI GCNGC 4 cut(s) 192, 357, 378, 470
FokI GGATG 3 cut(s) 164, 227, 238
Fsp4HI GCNGC 4 cut(s) 192, 357, 378, 470
FspBI CTAG 1 cut(s) 453
GlaI GCGC 2 cut(s) 250, 473
GluI GCNGC 4 cut(s) 192, 357, 378, 470
GsaI CCCAGC 2 cut(s) 356, 489
GsuI CTGGAG 1 cut(s) 519
HapII CCGG 1 cut(s) 117
HhaI GCGC 2 cut(s) 251, 474
Hin1II CATG 1 cut(s) 375
Hin6I GCGC 2 cut(s) 249, 472
HinP1I GCGC 2 cut(s) 249, 472
HinfI GANTC 5 cut(s) 63, 72, 368, 464, 501
HpaII CCGG 1 cut(s) 117
HphI GGTGA 2 cut(s) 249, 437
Hpy166II GTNNAC 2 cut(s) 49, 217
Hpy188I TCNGA 3 cut(s) 148, 295, 340
Hpy188III TCNNGA 1 cut(s) 67
Hpy8I GTNNAC 2 cut(s) 49, 217
Hpy99I CGWCG 1 cut(s) 368
HpyCH4III ACNGT 4 cut(s) 18, 59, 91, 494
HpyCH4IV ACGT 1 cut(s) 263
HpyCH4V TGCA 2 cut(s) 124, 240
HpyF10VI GCNNNNNNNGC 1 cut(s) 246
HpyF3I CTNAG 2 cut(s) 167, 286
HpySE526I ACGT 1 cut(s) 263
Hsp92II CATG 1 cut(s) 375
HspAI GCGC 2 cut(s) 249, 472
Ksp22I TGATCA 1 cut(s) 39
Kzo9I GATC 1 cut(s) 39
LmnI GCTCC 1 cut(s) 340
LpnPI CCDG 8 cut(s) 63, 90, 130, 168, 313, 366, 471, 483
Lsp1109I GCAGC 4 cut(s) 178, 343, 364, 481
LweI GCATC 2 cut(s) 249, 260
MaeI CTAG 1 cut(s) 453
MaeII ACGT 1 cut(s) 263
MalI GATC 1 cut(s) 41
MboI GATC 1 cut(s) 39
MboII GAAGA 9 cut(s) 23, 200, 440, 443, 446, 452, 472, 496, 499
MhlI GDGCHC 1 cut(s) 345
MluCI AATT 1 cut(s) 280
MlyI GAGTC 3 cut(s) 66, 72, 510
MnlI CCTC 5 cut(s) 105, 216, 265, 289, 346
MseI TTAA 1 cut(s) 279
MslI CAYNNNNRTG 2 cut(s) 228, 405
MspA1I CMGCKG 2 cut(s) 191, 356
MspI CCGG 1 cut(s) 117
MspR9I CCNGG 1 cut(s) 78
MvaI CCWGG 1 cut(s) 78
MvnI CGCG 1 cut(s) 474
MwoI GCNNNNNNNGC 1 cut(s) 246
NdeII GATC 1 cut(s) 39
NlaIII CATG 1 cut(s) 375
OliI CACNNNNGTG 1 cut(s) 228
PcsI WCGNNNNNNNCGW 1 cut(s) 63
PfeI GAWTC 2 cut(s) 368, 464
PflFI GACNNNGTC 1 cut(s) 137
PkrI GCNGC 4 cut(s) 193, 358, 379, 471
PleI GAGTC 3 cut(s) 66, 71, 509
PpsI GAGTC 3 cut(s) 66, 71, 509
Ppu21I YACGTR 1 cut(s) 264
Psp6I CCWGG 1 cut(s) 76
PspFI CCCAGC 2 cut(s) 352, 485
PspGI CCWGG 1 cut(s) 76
PsyI GACNNNGTC 1 cut(s) 137
PvuII CAGCTG 1 cut(s) 356
RsaI GTAC 1 cut(s) 326
RsaNI GTAC 1 cut(s) 325
RseI CAYNNNNRTG 2 cut(s) 228, 405
SaqAI TTAA 1 cut(s) 279
SatI GCNGC 4 cut(s) 192, 357, 378, 470
Sau3AI GATC 1 cut(s) 39
SchI GAGTC 3 cut(s) 66, 72, 510
ScrFI CCNGG 1 cut(s) 78
SduI GDGCHC 1 cut(s) 345
SetI ASST 5 cut(s) 266, 279, 300, 358, 458
SfaNI GCATC 2 cut(s) 249, 260
SmiMI CAYNNNNRTG 2 cut(s) 228, 405
Sse9I AATT 1 cut(s) 280
SsiI CCGC 4 cut(s) 189, 228, 423, 461
SspMI CTAG 1 cut(s) 453
StyD4I CCNGG 1 cut(s) 76
TaaI ACNGT 4 cut(s) 18, 59, 91, 494
TaiI ACGT 1 cut(s) 266
TaqI TCGA 2 cut(s) 61, 66
TasI AATT 1 cut(s) 280
TatI WGTACW 1 cut(s) 324
TfiI GAWTC 2 cut(s) 368, 464
Tru1I TTAA 1 cut(s) 279
Tru9I TTAA 1 cut(s) 279
TscAI CASTG 1 cut(s) 499
TseI GCWGC 4 cut(s) 191, 356, 377, 469
TspDTI ATGAA 3 cut(s) 24, 360, 453
TspRI CASTG 1 cut(s) 499
Tth111I GACNNNGTC 1 cut(s) 137
XmiI GTMKAC 1 cut(s) 48
XspI CTAG 1 cut(s) 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.