Rh6CG085600

Carboxylesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000397
Physical Location & Seq
Forward (+)
9387904 .. 9388581
678 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG085600.1

Sequence Viewer

Length: 678 bp
ATGAGCGATGAGTTAGCCCATGACTTCTCTCCTCTCTTTAAAATCTACAAAGATGGTCAAATTGAGCGACTCATGGGCACAGATACAGTTCCTCCATCAGTTCATCCCCAAACTGGTGTCGAATCCAAAGATGTCATGATTTCAAACGAAACAGGATTATATGCTAGGCTTTACATCCCCAAATCCACCACAACCTCTTCCACCAAACTCCCTCTTCTTGTTTACTTCCACGGCGGCGGCTTCTGTGTTGAAACTGCCTCTTCTCCTACTTACCACAACTACCTCAACTCCCTAGTAGCGGAAGCTAATGTTGTTGCTGTGTCTGTTGACTTTAGGAGAGTCCCAGAGTACCCTCTGCCTGTTGCCTACAATGATTCCTGGGATGCTCTCAAATGGGTTGCTTCTCATTCTGATGGAAGTGGCTCTGAGGAGTGGCTAAATAACCATGCAGATTTTCAGAAACTGTTCTTCTCTGGTGATAGTTCTGGTGGTAATATAGCGCATAACATGGCTGTGAAAGTCAGCTCTGAGGGCTTGGTTGGTGTTAAGCTCATAGGGATTGTGCTGGTGCATCCCTTTCTTTGGGGGGAAAGAACCAATTGGGGGAGAGTCAACTATGCCTGCAGTTCAAAGAGAGTATCTGGATTCTATGTGGCGTTCTGTGTACCCTTTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

225

Amino Acids

24.78

Weight (kDa)

5.72

Isoelectric Point (pI)

42.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COesterase PF00135 41 - 112 1.4e-09 Carboxylesterase family
BD-FAE PF20434 58 - 175 6.4e-11 BD-FAE
Abhydrolase_3 PF07859 73 - 199 1.5e-36 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000397)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48690 AT3G48700
fragaria_vesca FvH4_2g06400 FvH4_2g06430 FvH4_2g06450 FvH4_2g06480 FvH4_2g06560
malus_domestica MD05G1076400.v1.1 MD05G1076500.v1.1 MD05G1078900.v1.1 MD05G1191000.v1.1 MD05G1191100.v1.1 MD08G1226300.v1.1 MD10G1091000.v1.1 MD10G1091200.v1.1 MD10G1091400.v1.1 MD10G1091600.v1.1 MD10G1091900.v1.1
prunus_persica Prupe.8G120800_v2.0.a1 Prupe.8G121100_v2.0.a1 Prupe.8G121200_v2.0.a1 Prupe.8G121300_v2.0.a1 Prupe.8G121400_v2.0.a1 Prupe.8G121500_v2.0.a1 Prupe.8G121600_v2.0.a1 Prupe.8G121700_v2.0.a1 Prupe.8G121900_v2.0.a1 Prupe.8G122000_v2.0.a1 Prupe.I000800_v2.0.a1
pyrus_communis pycom05g07040 pycom05g17560 pycom05g17680 pycom05g17760 pycom10g07450 pycom10g07470 pycom10g07550
rosa_chinensis RchiOBHm_Chr6g0258271 RchiOBHm_Chr6g0258281 RchiOBHm_Chr6g0258291 RchiOBHm_Chr6g0258311 RchiOBHm_Chr6g0258321 RchiOBHm_Chr6g0258501
rosa_laevigata RLG00000014606 RLG00000014621 RLG00000014622 RLG00000014624 RLG00000014625 RLG00000014627 RLG00000014629 RLG00000014633 RLG00000014635
rosa_multiflora Rmu_co8014592.1_g000001 Rmu_co8366243.1_g000001 Rmu_sc0001663.1_g000004 Rmu_sc0005877.1_g000001 Rmu_sc0005877.1_g000006 Rmu_sc0005877.1_g000007 Rmu_sc0007367.1_g000009 Rmu_sc0007367.1_g000019 Rmu_sc0010616.1_g000022 Rmu_sc0010616.1_g000023 Rmu_ssc0000213.1_g000009
rosa_roxburghii Rroxscaffold_178G00437230 Rroxscaffold_178G00437250 Rroxscaffold_178G00437280 Rroxscaffold_178G00437320 Rroxscaffold_178G00437340 Rroxscaffold_178G00437350 Rroxscaffold_178G00437480 Rroxscaffold_7G00205390 Rroxscaffold_7G00205410 Rroxscaffold_7G00205450 Rroxscaffold_7G00205490 Rroxscaffold_7G00205510 Rroxscaffold_7G00205520 Rroxscaffold_7G00205670 Rroxscaffold_7G00205730
rosa_rugosa Rorug05G0579800 Rorug05G0580500 Rorug05G0580600 Rorug05G0580700 Rorug05G0580900 Rorug05G0581000 Rorug05G0581900
rosa_samantha Rh6CG084800 Rh6CG085100 Rh6CG085200 Rh6CG085400 Rh6CG085500 Rh6CG085600 Rh6CG085700 Rh6CG086900
rosa_wichuraiana Rw6G008300 Rw6G008310 Rw6G008360 Rw6G008370 Rw6G008380 Rw6G008390 Rw6G008430 Rw6G008440 Rw6G008530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 234, 237, 299
AfaI GTAC 2 cut(s) 350, 666
AfiI CCNNNNNNNGG 4 cut(s) 113, 298, 582, 603
AgsI TTSAA 3 cut(s) 144, 251, 630
AjnI CCWGG 1 cut(s) 377
AluBI AGCT 3 cut(s) 305, 525, 550
AluI AGCT 3 cut(s) 305, 525, 550
AlwNI CAGNNNCTG 1 cut(s) 463
Asp700I GAANNNNTTC 1 cut(s) 464
AspLEI GCGC 1 cut(s) 502
AsuHPI GGTGA 1 cut(s) 488
BaeGI GKGCMC 1 cut(s) 80
BccI CCATC 3 cut(s) 47, 103, 407
BceAI ACGGC 1 cut(s) 247
BciT130I CCWGG 1 cut(s) 379
BfaI CTAG 3 cut(s) 165, 293, 676
BfmI CTRYAG 1 cut(s) 622
BisI GCNGC 2 cut(s) 235, 238
BlsI GCNGC 2 cut(s) 236, 239
Bme1390I CCNGG 1 cut(s) 379
BmrFI CCNGG 1 cut(s) 379
BmsI GCATC 2 cut(s) 373, 580
BsaJI CCNNGG 2 cut(s) 229, 378
BsaXI ACNNNNNCTCC 4 cut(s) 76, 106, 272, 302
Bsc4I CCNNNNNNNGG 4 cut(s) 113, 298, 582, 603
Bse1I ACTGG 1 cut(s) 118
BseBI CCWGG 1 cut(s) 379
BseDI CCNNGG 2 cut(s) 229, 378
BseGI GGATG 4 cut(s) 103, 174, 388, 571
BseLI CCNNNNNNNGG 4 cut(s) 113, 298, 582, 603
BseMII CTCAG 2 cut(s) 417, 519
BseNI ACTGG 1 cut(s) 118
BseRI GAGGAG 2 cut(s) 21, 443
BseSI GKGCMC 1 cut(s) 80
BslFI GGGAC 1 cut(s) 326
BslI CCNNNNNNNGG 4 cut(s) 113, 298, 582, 603
BsmFI GGGAC 1 cut(s) 326
Bsp1286I GDGCHC 1 cut(s) 80
BspACI CCGC 3 cut(s) 234, 237, 299
BspCNI CTCAG 2 cut(s) 418, 520
BspHI TCATGA 1 cut(s) 135
BspMAI CTGCAG 1 cut(s) 626
BsrI ACTGG 1 cut(s) 118
BssECI CCNNGG 2 cut(s) 229, 378
Bst2UI CCWGG 1 cut(s) 379
Bst4CI ACNGT 2 cut(s) 88, 465
Bst6I CTCTTC 3 cut(s) 202, 219, 265
BstC8I GCNNGC 1 cut(s) 622
BstDEI CTNAG 2 cut(s) 426, 528
BstDSI CCRYGG 1 cut(s) 229
BstF5I GGATG 4 cut(s) 103, 174, 388, 571
BstHHI GCGC 1 cut(s) 502
BstMWI GCNNNNNNNGC 1 cut(s) 531
BstNI CCWGG 1 cut(s) 379
BstSCI CCNGG 1 cut(s) 377
BstSFI CTRYAG 1 cut(s) 622
BstSLI GKGCMC 1 cut(s) 80
BtgI CCRYGG 1 cut(s) 229
BtgZI GCGATG 1 cut(s) 21
BtsCI GGATG 4 cut(s) 103, 174, 388, 571
Cac8I GCNNGC 1 cut(s) 622
CaiI CAGNNNCTG 1 cut(s) 463
CciI TCATGA 1 cut(s) 135
CfoI GCGC 1 cut(s) 502
Csp6I GTAC 2 cut(s) 349, 665
CviAII CATG 5 cut(s) 20, 73, 136, 446, 508
CviQI GTAC 2 cut(s) 349, 665
DdeI CTNAG 2 cut(s) 426, 528
DraI TTTAAA 1 cut(s) 40
Eam1104I CTCTTC 3 cut(s) 202, 219, 265
EarI CTCTTC 3 cut(s) 202, 219, 265
EcoRII CCWGG 1 cut(s) 377
FaeI CATG 5 cut(s) 23, 76, 139, 449, 511
FaqI GGGAC 1 cut(s) 326
FatI CATG 5 cut(s) 19, 72, 135, 445, 507
Fnu4HI GCNGC 2 cut(s) 235, 238
FokI GGATG 4 cut(s) 90, 161, 395, 558
Fsp4HI GCNGC 2 cut(s) 235, 238
FspBI CTAG 3 cut(s) 165, 293, 676
GlaI GCGC 1 cut(s) 501
GluI GCNGC 2 cut(s) 235, 238
HhaI GCGC 1 cut(s) 502
Hin1II CATG 5 cut(s) 23, 76, 139, 449, 511
Hin6I GCGC 1 cut(s) 500
HinP1I GCGC 1 cut(s) 500
HincII GTYRAC 2 cut(s) 328, 613
HindII GTYRAC 2 cut(s) 328, 613
HinfI GANTC 6 cut(s) 69, 122, 339, 374, 609, 645
HphI GGTGA 1 cut(s) 488
Hpy166II GTNNAC 4 cut(s) 223, 328, 613, 665
Hpy188I TCNGA 4 cut(s) 412, 427, 459, 529
Hpy188III TCNNGA 2 cut(s) 136, 642
Hpy8I GTNNAC 4 cut(s) 223, 328, 613, 665
HpyCH4III ACNGT 2 cut(s) 88, 465
HpyCH4V TGCA 3 cut(s) 449, 571, 624
HpyF10VI GCNNNNNNNGC 1 cut(s) 531
HpyF3I CTNAG 2 cut(s) 426, 528
Hsp92II CATG 5 cut(s) 23, 76, 139, 449, 511
HspAI GCGC 1 cut(s) 500
LweI GCATC 2 cut(s) 373, 580
MaeI CTAG 3 cut(s) 165, 293, 676
MboII GAAGA 4 cut(s) 189, 206, 252, 460
MfeI CAATTG 1 cut(s) 598
MhlI GDGCHC 1 cut(s) 80
MluCI AATT 2 cut(s) 60, 598
MlyI GAGTC 3 cut(s) 63, 348, 618
MnlI CCTC 9 cut(s) 42, 102, 205, 222, 268, 293, 363, 421, 523
MroXI GAANNNNTTC 1 cut(s) 464
MseI TTAA 2 cut(s) 39, 546
MslI CAYNNNNRTG 2 cut(s) 411, 512
MspR9I CCNGG 1 cut(s) 379
MunI CAATTG 1 cut(s) 598
MvaI CCWGG 1 cut(s) 379
MwoI GCNNNNNNNGC 1 cut(s) 531
NlaIII CATG 5 cut(s) 23, 76, 139, 449, 511
PagI TCATGA 1 cut(s) 135
PdmI GAANNNNTTC 1 cut(s) 464
PfeI GAWTC 3 cut(s) 122, 374, 645
PkrI GCNGC 2 cut(s) 236, 239
PleI GAGTC 3 cut(s) 63, 347, 617
PpsI GAGTC 3 cut(s) 63, 347, 617
Psp6I CCWGG 1 cut(s) 377
PspGI CCWGG 1 cut(s) 377
PstI CTGCAG 1 cut(s) 626
PstNI CAGNNNCTG 1 cut(s) 463
RsaI GTAC 2 cut(s) 350, 666
RsaNI GTAC 2 cut(s) 349, 665
RseI CAYNNNNRTG 2 cut(s) 411, 512
SaqAI TTAA 2 cut(s) 39, 546
SatI GCNGC 2 cut(s) 235, 238
SchI GAGTC 3 cut(s) 63, 348, 618
ScrFI CCNGG 1 cut(s) 379
SduI GDGCHC 1 cut(s) 80
SetI ASST 5 cut(s) 197, 285, 307, 527, 552
SfaNI GCATC 2 cut(s) 373, 580
SfcI CTRYAG 1 cut(s) 622
SmiMI CAYNNNNRTG 2 cut(s) 411, 512
Sse9I AATT 2 cut(s) 60, 598
SsiI CCGC 3 cut(s) 234, 237, 299
SspMI CTAG 3 cut(s) 165, 293, 676
StyD4I CCNGG 1 cut(s) 377
TaaI ACNGT 2 cut(s) 88, 465
TaqI TCGA 1 cut(s) 120
TasI AATT 2 cut(s) 60, 598
TauI GCSGC 2 cut(s) 237, 240
TfiI GAWTC 3 cut(s) 122, 374, 645
Tru1I TTAA 2 cut(s) 39, 546
Tru9I TTAA 2 cut(s) 39, 546
TspDTI ATGAA 1 cut(s) 92
XmnI GAANNNNTTC 1 cut(s) 464
XspI CTAG 3 cut(s) 165, 293, 676
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.