pycom05g17680

Carboxylesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0000397
Physical Location & Seq
Reverse (-)
20817342 .. 20818028
687 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g17680.1

Sequence Viewer

Length: 687 bp
ATGAGCAATGAAGAACTGTCTTATGACTTCTCTCCAATGATCAAAGTATACAAAGACGGTCGAGTCGAGAGACTCCTAGGCATAGCCACAGTTCCTCCATCAACACAACCCGAAACCGGAGTGCAATCAAAAGACATTGTCATCTCCCAACAACCAGCAATATCTGTAAGGCTCTACATCCCCAAATCCGCTGCCACCAAACTCCCTCTTCTCGTTTACTTTCACGGCGGTGGCTTCTGCATCCAAAGCGCCTCCTCCCCCACGTATCACAACTACCTTAATTCCTTAGTCTCCGAGGTCAATGTTGTTGCCGTCTCTGTTGAGTACAGGCTTGCCCCGGAGCACCCAATCCCAGCTGCCTACGACGATTCATGGGCTGCTCTCAAATGGGTGGCTTCCCATTTTGATAGAAAGCGAAAGGGCGGTGAAGAAGAAGATGAAGATTGGATAACTAGCTATGCGGATTCGCAGCGCGTGTTCTTCGCTGGGGACAGTGCCGGAGCTAATATAGCGCACCATATGGGATTGAAAGTAGGCTCGGAGGGGCTGCCTGGTGTTAAGCTGATTGGGATTGTTGGTCCATCCATATTTCTGGGGGTCAGATCGAATTGGGGTAGAGCTCAATGCCCCTGCAAATATAAGAGAGTTTGTGGCAGCCATGTGGCGCTTTGTCTACCCGTTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

229

Amino Acids

24.88

Weight (kDa)

6.65

Isoelectric Point (pI)

46.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COesterase PF00135 57 - 113 1.6e-08 Carboxylesterase family
BD-FAE PF20434 58 - 134 3.7e-11 BD-FAE
Abhydrolase_3 PF07859 71 - 195 1.6e-38 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000397)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48690 AT3G48700
fragaria_vesca FvH4_2g06400 FvH4_2g06430 FvH4_2g06450 FvH4_2g06480 FvH4_2g06560
malus_domestica MD05G1076400.v1.1 MD05G1076500.v1.1 MD05G1078900.v1.1 MD05G1191000.v1.1 MD05G1191100.v1.1 MD08G1226300.v1.1 MD10G1091000.v1.1 MD10G1091200.v1.1 MD10G1091400.v1.1 MD10G1091600.v1.1 MD10G1091900.v1.1
prunus_persica Prupe.8G120800_v2.0.a1 Prupe.8G121100_v2.0.a1 Prupe.8G121200_v2.0.a1 Prupe.8G121300_v2.0.a1 Prupe.8G121400_v2.0.a1 Prupe.8G121500_v2.0.a1 Prupe.8G121600_v2.0.a1 Prupe.8G121700_v2.0.a1 Prupe.8G121900_v2.0.a1 Prupe.8G122000_v2.0.a1 Prupe.I000800_v2.0.a1
pyrus_communis pycom05g07040 pycom05g17560 pycom05g17680 pycom05g17760 pycom10g07450 pycom10g07470 pycom10g07550
rosa_chinensis RchiOBHm_Chr6g0258271 RchiOBHm_Chr6g0258281 RchiOBHm_Chr6g0258291 RchiOBHm_Chr6g0258311 RchiOBHm_Chr6g0258321 RchiOBHm_Chr6g0258501
rosa_laevigata RLG00000014606 RLG00000014621 RLG00000014622 RLG00000014624 RLG00000014625 RLG00000014627 RLG00000014629 RLG00000014633 RLG00000014635
rosa_multiflora Rmu_co8014592.1_g000001 Rmu_co8366243.1_g000001 Rmu_sc0001663.1_g000004 Rmu_sc0005877.1_g000001 Rmu_sc0005877.1_g000006 Rmu_sc0005877.1_g000007 Rmu_sc0007367.1_g000009 Rmu_sc0007367.1_g000019 Rmu_sc0010616.1_g000022 Rmu_sc0010616.1_g000023 Rmu_ssc0000213.1_g000009
rosa_roxburghii Rroxscaffold_178G00437230 Rroxscaffold_178G00437250 Rroxscaffold_178G00437280 Rroxscaffold_178G00437320 Rroxscaffold_178G00437340 Rroxscaffold_178G00437350 Rroxscaffold_178G00437480 Rroxscaffold_7G00205390 Rroxscaffold_7G00205410 Rroxscaffold_7G00205450 Rroxscaffold_7G00205490 Rroxscaffold_7G00205510 Rroxscaffold_7G00205520 Rroxscaffold_7G00205670 Rroxscaffold_7G00205730
rosa_rugosa Rorug05G0579800 Rorug05G0580500 Rorug05G0580600 Rorug05G0580700 Rorug05G0580900 Rorug05G0581000 Rorug05G0581900
rosa_samantha Rh6CG084800 Rh6CG085100 Rh6CG085200 Rh6CG085400 Rh6CG085500 Rh6CG085600 Rh6CG085700 Rh6CG086900
rosa_wichuraiana Rw6G008300 Rw6G008310 Rw6G008360 Rw6G008370 Rw6G008380 Rw6G008390 Rw6G008430 Rw6G008440 Rw6G008530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 62
AccI GTMKAC 2 cut(s) 48, 673
AccII CGCG 1 cut(s) 474
AciI CCGC 4 cut(s) 189, 228, 423, 461
AfaI GTAC 1 cut(s) 326
AfiI CCNNNNNNNGG 1 cut(s) 116
AgsI TTSAA 1 cut(s) 529
AjnI CCWGG 1 cut(s) 550
AleI CACNNNNGTG 1 cut(s) 228
AluBI AGCT 5 cut(s) 356, 456, 503, 562, 620
AluI AGCT 5 cut(s) 356, 456, 503, 562, 620
Alw21I GWGCWC 2 cut(s) 345, 622
Alw26I GTCTC 3 cut(s) 64, 295, 319
ApeKI GCWGC 6 cut(s) 191, 356, 377, 469, 547, 654
AspA2I CCTAGG 1 cut(s) 76
AspLEI GCGC 4 cut(s) 251, 474, 514, 667
AspS9I GGNCC 1 cut(s) 578
AsuC2I CCSGG 1 cut(s) 338
AsuHPI GGTGA 1 cut(s) 437
AvaII GGWCC 1 cut(s) 578
AvrII CCTAGG 1 cut(s) 76
BanII GRGCYC 1 cut(s) 622
Bbv12I GWGCWC 2 cut(s) 345, 622
BbvI GCAGC 6 cut(s) 178, 343, 364, 481, 534, 666
BccI CCATC 2 cut(s) 106, 589
BceAI ACGGC 2 cut(s) 241, 296
BciT130I CCWGG 1 cut(s) 552
BclI TGATCA 1 cut(s) 39
BcnI CCSGG 1 cut(s) 338
BcoDI GTCTC 3 cut(s) 64, 295, 319
BfaI CTAG 2 cut(s) 77, 453
BfoI RGCGCY 2 cut(s) 252, 668
BisI GCNGC 6 cut(s) 192, 357, 378, 470, 548, 655
BlnI CCTAGG 1 cut(s) 76
BlsI GCNGC 6 cut(s) 193, 358, 379, 471, 549, 656
Bme1390I CCNGG 2 cut(s) 338, 552
Bme18I GGWCC 1 cut(s) 578
BmgT120I GGNCC 1 cut(s) 578
BmrFI CCNGG 2 cut(s) 338, 552
BmsI GCATC 1 cut(s) 249
BpuMI CCSGG 1 cut(s) 338
BsaAI YACGTR 1 cut(s) 264
BsaJI CCNNGG 3 cut(s) 76, 294, 336
BsaWI WCCGGW 1 cut(s) 116
BsaXI ACNNNNNCTCC 2 cut(s) 79, 109
Bsc4I CCNNNNNNNGG 1 cut(s) 116
Bse3DI GCAATG 1 cut(s) 13
BseBI CCWGG 1 cut(s) 552
BseDI CCNNGG 3 cut(s) 76, 294, 336
BseGI GGATG 3 cut(s) 177, 240, 581
BseLI CCNNNNNNNGG 1 cut(s) 116
BseMI GCAATG 1 cut(s) 13
BseRI GAGGAG 1 cut(s) 244
BseXI GCAGC 6 cut(s) 178, 343, 364, 481, 534, 666
BseYI CCCAGC 2 cut(s) 352, 485
Bsh1236I CGCG 1 cut(s) 474
Bsh1285I CGRYCG 1 cut(s) 61
BsiEI CGRYCG 1 cut(s) 61
BsiHKAI GWGCWC 2 cut(s) 345, 622
BsiSI CCGG 3 cut(s) 117, 338, 498
BslFI GGGAC 1 cut(s) 503
BslI CCNNNNNNNGG 1 cut(s) 116
BsmAI GTCTC 3 cut(s) 64, 295, 319
BsmBI CGTCTC 1 cut(s) 319
BsmFI GGGAC 1 cut(s) 503
Bsp1286I GDGCHC 2 cut(s) 345, 622
Bsp143I GATC 2 cut(s) 39, 602
BspACI CCGC 4 cut(s) 189, 228, 423, 461
BspFNI CGCG 1 cut(s) 474
BsrDI GCAATG 1 cut(s) 13
BssECI CCNNGG 3 cut(s) 76, 294, 336
BssMI GATC 2 cut(s) 39, 602
BssNAI GTATAC 1 cut(s) 49
BssT1I CCWWGG 1 cut(s) 76
Bst1107I GTATAC 1 cut(s) 49
Bst2UI CCWGG 1 cut(s) 552
Bst4CI ACNGT 4 cut(s) 18, 59, 91, 494
Bst6I CTCTTC 1 cut(s) 213
BstBAI YACGTR 1 cut(s) 264
BstC8I GCNNGC 1 cut(s) 333
BstDEI CTNAG 1 cut(s) 286
BstF5I GGATG 3 cut(s) 177, 240, 581
BstFNI CGCG 1 cut(s) 474
BstH2I RGCGCY 2 cut(s) 252, 668
BstHHI GCGC 4 cut(s) 251, 474, 514, 667
BstKTI GATC 2 cut(s) 42, 605
BstMAI GTCTC 3 cut(s) 64, 295, 319
BstMBI GATC 2 cut(s) 39, 602
BstMCI CGRYCG 1 cut(s) 61
BstMWI GCNNNNNNNGC 2 cut(s) 246, 509
BstNI CCWGG 1 cut(s) 552
BstSCI CCNGG 2 cut(s) 336, 550
BstUI CGCG 1 cut(s) 474
BstV1I GCAGC 6 cut(s) 178, 343, 364, 481, 534, 666
BstXI CCANNNNNNTGG 1 cut(s) 592
BstZ17I GTATAC 1 cut(s) 49
BtsCI GGATG 3 cut(s) 177, 240, 581
BtsIMutI CAGTG 1 cut(s) 499
Cac8I GCNNGC 1 cut(s) 333
CfoI GCGC 4 cut(s) 251, 474, 514, 667
Cfr13I GGNCC 1 cut(s) 578
Csp6I GTAC 1 cut(s) 325
CviAII CATG 2 cut(s) 372, 659
CviQI GTAC 1 cut(s) 325
DdeI CTNAG 1 cut(s) 286
DpnI GATC 2 cut(s) 41, 604
DpnII GATC 2 cut(s) 39, 602
DrdI GACNNNNNNGTC 1 cut(s) 62
DseDI GACNNNNNNGTC 1 cut(s) 62
Eam1104I CTCTTC 1 cut(s) 213
EarI CTCTTC 1 cut(s) 213
Ecl136II GAGCTC 1 cut(s) 620
Eco130I CCWWGG 1 cut(s) 76
Eco24I GRGCYC 1 cut(s) 622
Eco47I GGWCC 1 cut(s) 578
Eco53kI GAGCTC 1 cut(s) 620
EcoICRI GAGCTC 1 cut(s) 620
EcoRII CCWGG 1 cut(s) 550
EcoT14I CCWWGG 1 cut(s) 76
EcoT38I GRGCYC 1 cut(s) 622
ErhI CCWWGG 1 cut(s) 76
Esp3I CGTCTC 1 cut(s) 319
FaeI CATG 2 cut(s) 375, 662
FaqI GGGAC 1 cut(s) 503
FatI CATG 2 cut(s) 371, 658
FauNDI CATATG 1 cut(s) 519
FbaI TGATCA 1 cut(s) 39
FblI GTMKAC 2 cut(s) 48, 673
Fnu4HI GCNGC 6 cut(s) 192, 357, 378, 470, 548, 655
FokI GGATG 3 cut(s) 164, 227, 568
FriOI GRGCYC 1 cut(s) 622
Fsp4HI GCNGC 6 cut(s) 192, 357, 378, 470, 548, 655
FspBI CTAG 2 cut(s) 77, 453
GlaI GCGC 4 cut(s) 250, 473, 513, 666
GluI GCNGC 6 cut(s) 192, 357, 378, 470, 548, 655
GsaI CCCAGC 2 cut(s) 356, 489
HaeII RGCGCY 2 cut(s) 252, 668
HapII CCGG 3 cut(s) 117, 338, 498
HhaI GCGC 4 cut(s) 251, 474, 514, 667
Hin1II CATG 2 cut(s) 375, 662
Hin6I GCGC 4 cut(s) 249, 472, 512, 665
HinP1I GCGC 4 cut(s) 249, 472, 512, 665
HinfI GANTC 4 cut(s) 63, 72, 368, 464
HpaII CCGG 3 cut(s) 117, 338, 498
HphI GGTGA 1 cut(s) 437
Hpy166II GTNNAC 3 cut(s) 49, 217, 674
Hpy188I TCNGA 3 cut(s) 295, 541, 602
Hpy188III TCNNGA 1 cut(s) 67
Hpy8I GTNNAC 3 cut(s) 49, 217, 674
Hpy99I CGWCG 1 cut(s) 368
HpyCH4III ACNGT 4 cut(s) 18, 59, 91, 494
HpyCH4IV ACGT 1 cut(s) 263
HpyCH4V TGCA 3 cut(s) 124, 240, 633
HpyF10VI GCNNNNNNNGC 2 cut(s) 246, 509
HpyF3I CTNAG 1 cut(s) 286
HpySE526I ACGT 1 cut(s) 263
Hsp92II CATG 2 cut(s) 375, 662
HspAI GCGC 4 cut(s) 249, 472, 512, 665
Ksp22I TGATCA 1 cut(s) 39
Kzo9I GATC 2 cut(s) 39, 602
LmnI GCTCC 2 cut(s) 340, 500
Lsp1109I GCAGC 6 cut(s) 178, 343, 364, 481, 534, 666
LweI GCATC 1 cut(s) 249
MaeI CTAG 2 cut(s) 77, 453
MaeII ACGT 1 cut(s) 263
MalI GATC 2 cut(s) 41, 604
MboI GATC 2 cut(s) 39, 602
MboII GAAGA 7 cut(s) 23, 200, 440, 443, 446, 452, 472
MhlI GDGCHC 2 cut(s) 345, 622
MluCI AATT 2 cut(s) 280, 607
MlyI GAGTC 2 cut(s) 66, 72
MnlI CCTC 6 cut(s) 105, 216, 262, 265, 289, 535
MseI TTAA 2 cut(s) 279, 558
MslI CAYNNNNRTG 1 cut(s) 228
MspA1I CMGCKG 2 cut(s) 191, 356
MspI CCGG 3 cut(s) 117, 338, 498
MspR9I CCNGG 2 cut(s) 338, 552
MvaI CCWGG 1 cut(s) 552
MvnI CGCG 1 cut(s) 474
MwoI GCNNNNNNNGC 2 cut(s) 246, 509
NciI CCSGG 1 cut(s) 338
NdeI CATATG 1 cut(s) 519
NdeII GATC 2 cut(s) 39, 602
NlaIII CATG 2 cut(s) 375, 662
OliI CACNNNNGTG 1 cut(s) 228
PcsI WCGNNNNNNNCGW 1 cut(s) 63
PfeI GAWTC 2 cut(s) 368, 464
PflFI GACNNNGTC 1 cut(s) 137
PkrI GCNGC 6 cut(s) 193, 358, 379, 471, 549, 656
PleI GAGTC 2 cut(s) 66, 71
PpsI GAGTC 2 cut(s) 66, 71
Ppu21I YACGTR 1 cut(s) 264
Psp124BI GAGCTC 1 cut(s) 622
Psp6I CCWGG 1 cut(s) 550
PspFI CCCAGC 2 cut(s) 352, 485
PspGI CCWGG 1 cut(s) 550
PspPI GGNCC 1 cut(s) 578
PsyI GACNNNGTC 1 cut(s) 137
PvuII CAGCTG 1 cut(s) 356
RsaI GTAC 1 cut(s) 326
RsaNI GTAC 1 cut(s) 325
RseI CAYNNNNRTG 1 cut(s) 228
SacI GAGCTC 1 cut(s) 622
SaqAI TTAA 2 cut(s) 279, 558
SatI GCNGC 6 cut(s) 192, 357, 378, 470, 548, 655
Sau3AI GATC 2 cut(s) 39, 602
Sau96I GGNCC 1 cut(s) 578
SchI GAGTC 2 cut(s) 66, 72
ScrFI CCNGG 2 cut(s) 338, 552
SduI GDGCHC 2 cut(s) 345, 622
SetI ASST 8 cut(s) 266, 279, 300, 358, 458, 505, 564, 622
SfaNI GCATC 1 cut(s) 249
SinI GGWCC 1 cut(s) 578
SmiMI CAYNNNNRTG 1 cut(s) 228
Sse9I AATT 2 cut(s) 280, 607
SsiI CCGC 4 cut(s) 189, 228, 423, 461
SspMI CTAG 2 cut(s) 77, 453
SstI GAGCTC 1 cut(s) 622
StyD4I CCNGG 2 cut(s) 336, 550
StyI CCWWGG 1 cut(s) 76
TaaI ACNGT 4 cut(s) 18, 59, 91, 494
TaiI ACGT 1 cut(s) 266
TaqI TCGA 3 cut(s) 61, 66, 605
TasI AATT 2 cut(s) 280, 607
TatI WGTACW 1 cut(s) 324
TfiI GAWTC 2 cut(s) 368, 464
Tru1I TTAA 2 cut(s) 279, 558
Tru9I TTAA 2 cut(s) 279, 558
TscAI CASTG 1 cut(s) 499
TseI GCWGC 6 cut(s) 191, 356, 377, 469, 547, 654
TspDTI ATGAA 3 cut(s) 24, 360, 453
TspRI CASTG 1 cut(s) 499
Tth111I GACNNNGTC 1 cut(s) 137
VpaK11BI GGWCC 1 cut(s) 578
XmaJI CCTAGG 1 cut(s) 76
XmiI GTMKAC 2 cut(s) 48, 673
XspI CTAG 2 cut(s) 77, 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.