Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000397

Physical Location & Seq

Genomic Coordinates Reverse (-)

55094132 .. 55095841

Gene Structure 1710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00205520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGCTACTTGTTTTTATGGCCTTTCGGTCCTCTCCATGTCTTTATGTCCAAAACCAAAAACTCAGACTTTCACTGTAAACCTCCATTCCAATCCCCCCTCTTCTTCAATCACACGTCTCTCTTTTCCACGCAAAAAGCCCTTCATTATTACCCGCTCACAGACCTCCTCCTCCCCCGCCATGGATACAAATCCAAGCACTGAAGTATACAAAGACTTCTCTCCCTTCCTCAAAATCTACAAAGACGGCCGAATCGAACGCCTCGCCAATACTGACTTTGTTCCAACATCGTTTGATCCCCAAACCGGTGTCGAAACCAAAGACGCTGTGATCTCAGAGGAAACAGGGCTCACTGTTAGACTCTACATCCCCAAAGCCAAAATTACTGAAAACCCAACAAAGCTTCCTCTCCTTGTTTACTACCATGGAGGTGGGTTTTGTATGGGGTCACCATTCTGTGCCTATTACAACAGCTATGTCAGTTCCTTGGTTGCCAAGGCAAATGTGATTGCTGTGTCTGTGGCTTATAGAAAGGCTCCAGAAAACCCTCTCCCAATTGGGTTTGAAGATTCATGGGCGGCGCTCAAATGGGTCGGGTCCCATTTTGAGGGAAAAGGACCAGATGAGTGGCTGAATACCTATGCTGACTTTGGGAGAGTGTTCTTGGGTGGTGATAGTGCTGGCGCTAATATAGCACATCACATGGGTTTGAGAATTGGATCCGACGGTTTGGTTGGTGTGAAGCTTAATGGGGTTGCTTTGGTGCATCCCTATTTTTGGGGGTCAGAACCAGTTGGGGCTGAATCGACTGTGGCTGAAAATAGAGCGACGGCAGAAGCTATATGGAGGTTTGCTTTTCCGACCACGAGTGGGGCGGATGATCCGTTGATAAACCCGGGTAAGGATCCGAAATTGGGGAAGTTGGCGGCAGAGAGAGTGCTGGTTTGTGTTGCTGAGAAGGATGGGTTGGTGCATAGGGGAGGCATTACAGTGAGCTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0009056 GO:0016787 GO:0016788 GO:0044424 GO:0044444 GO:0044464 GO:0052689

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

333

Amino Acids

36.04

Weight (kDa)

8.12

Isoelectric Point (pI)

32.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COesterase	PF00135	105 - 244	1.8e-10	Carboxylesterase family
BD-FAE	PF20434	131 - 238	2e-07	BD-FAE
Abhydrolase_3	PF07859	138 - 327	9.1e-42	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000397)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48690 AT3G48700
fragaria_vesca	FvH4_2g06400 FvH4_2g06430 FvH4_2g06450 FvH4_2g06480 FvH4_2g06560
malus_domestica	MD05G1076400.v1.1 MD05G1076500.v1.1 MD05G1078900.v1.1 MD05G1191000.v1.1 MD05G1191100.v1.1 MD08G1226300.v1.1 MD10G1091000.v1.1 MD10G1091200.v1.1 MD10G1091400.v1.1 MD10G1091600.v1.1 MD10G1091900.v1.1
prunus_persica	Prupe.8G120800_v2.0.a1 Prupe.8G121100_v2.0.a1 Prupe.8G121200_v2.0.a1 Prupe.8G121300_v2.0.a1 Prupe.8G121400_v2.0.a1 Prupe.8G121500_v2.0.a1 Prupe.8G121600_v2.0.a1 Prupe.8G121700_v2.0.a1 Prupe.8G121900_v2.0.a1 Prupe.8G122000_v2.0.a1 Prupe.I000800_v2.0.a1
pyrus_communis	pycom05g07040 pycom05g17560 pycom05g17680 pycom05g17760 pycom10g07450 pycom10g07470 pycom10g07550
rosa_chinensis	RchiOBHm_Chr6g0258271 RchiOBHm_Chr6g0258281 RchiOBHm_Chr6g0258291 RchiOBHm_Chr6g0258311 RchiOBHm_Chr6g0258321 RchiOBHm_Chr6g0258501
rosa_laevigata	RLG00000014606 RLG00000014621 RLG00000014622 RLG00000014624 RLG00000014625 RLG00000014627 RLG00000014629 RLG00000014633 RLG00000014635
rosa_multiflora	Rmu_co8014592.1_g000001 Rmu_co8366243.1_g000001 Rmu_sc0001663.1_g000004 Rmu_sc0005877.1_g000001 Rmu_sc0005877.1_g000006 Rmu_sc0005877.1_g000007 Rmu_sc0007367.1_g000009 Rmu_sc0007367.1_g000019 Rmu_sc0010616.1_g000022 Rmu_sc0010616.1_g000023 Rmu_ssc0000213.1_g000009
rosa_roxburghii	Rroxscaffold_178G00437230 Rroxscaffold_178G00437250 Rroxscaffold_178G00437280 Rroxscaffold_178G00437320 Rroxscaffold_178G00437340 Rroxscaffold_178G00437350 Rroxscaffold_178G00437480 Rroxscaffold_7G00205390 Rroxscaffold_7G00205410 Rroxscaffold_7G00205450 Rroxscaffold_7G00205490 Rroxscaffold_7G00205510 Rroxscaffold_7G00205520 Rroxscaffold_7G00205670 Rroxscaffold_7G00205730
rosa_rugosa	Rorug05G0579800 Rorug05G0580500 Rorug05G0580600 Rorug05G0580700 Rorug05G0580900 Rorug05G0581000 Rorug05G0581900
rosa_samantha	Rh6CG084800 Rh6CG085100 Rh6CG085200 Rh6CG085400 Rh6CG085500 Rh6CG085600 Rh6CG085700 Rh6CG086900
rosa_wichuraiana	Rw6G008300 Rw6G008310 Rw6G008360 Rw6G008370 Rw6G008380 Rw6G008390 Rw6G008430 Rw6G008440 Rw6G008530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	156
AccI	GTMKAC	1 cut(s)	207
AciI	CCGC	5 cut(s)	154, 177, 578, 875, 926
AclWI	GGATC	6 cut(s)	290, 714, 727, 875, 899, 912
AcoI	YGGCCR	1 cut(s)	247
AcuI	CTGAAG	1 cut(s)	222
AfiI	CCNNNNNNNGG	7 cut(s)	181, 305, 607, 777, 870, 901, 914
AflIII	ACRYGT	1 cut(s)	113
AgeI	ACCGGT	1 cut(s)	305
AgsI	TTSAA	2 cut(s)	108, 566
AjiI	CACGTC	1 cut(s)	116
AjuI	GAANNNNNNNTTGG	2 cut(s)	950, 982
AluBI	AGCT	5 cut(s)	403, 474, 745, 839, 996
AluI	AGCT	5 cut(s)	403, 474, 745, 839, 996
Alw26I	GTCTC	1 cut(s)	122
AlwI	GGATC	6 cut(s)	290, 714, 727, 875, 899, 912
Ama87I	CYCGRG	1 cut(s)	895
AoxI	GGCC	2 cut(s)	19, 247
AsiGI	ACCGGT	1 cut(s)	305
AspLEI	GCGC	2 cut(s)	583, 686
AspS9I	GGNCC	3 cut(s)	28, 597, 617
AsuC2I	CCSGG	2 cut(s)	896, 897
AsuHPI	GGTGA	2 cut(s)	441, 683
AvaI	CYCGRG	1 cut(s)	895
AvaII	GGWCC	3 cut(s)	28, 597, 617
BamHI	GGATCC	2 cut(s)	719, 904
BanII	GRGCYC	1 cut(s)	351
BauI	CACGAG	1 cut(s)	865
BccI	CCATC	1 cut(s)	956
BceAI	ACGGC	2 cut(s)	262, 846
BciVI	GTATCC	1 cut(s)	178
BcnI	CCSGG	2 cut(s)	896, 897
BcoDI	GTCTC	1 cut(s)	122
BfoI	RGCGCY	2 cut(s)	584, 687
BfuI	GTATCC	1 cut(s)	178
BisI	GCNGC	2 cut(s)	579, 927
BlsI	GCNGC	2 cut(s)	580, 928
Bme1390I	CCNGG	2 cut(s)	896, 897
Bme18I	GGWCC	3 cut(s)	28, 597, 617
BmeT110I	CYCGRG	1 cut(s)	895
BmgBI	CACGTC	1 cut(s)	116
BmgT120I	GGNCC	3 cut(s)	28, 597, 617
BmiI	GGNNCC	5 cut(s)	537, 598, 599, 721, 906
BmrFI	CCNGG	2 cut(s)	896, 897
BmsI	GCATC	1 cut(s)	775
BpmI	CTGGAG	1 cut(s)	522
BpuMI	CCSGG	2 cut(s)	896, 897
BsaBI	GATNNNNATC	1 cut(s)	189
BsaJI	CCNNGG	5 cut(s)	180, 424, 486, 495, 895
BsaWI	WCCGGW	1 cut(s)	305
Bsc4I	CCNNNNNNNGG	7 cut(s)	181, 305, 607, 777, 870, 901, 914
Bse118I	RCCGGY	1 cut(s)	305
Bse1I	ACTGG	1 cut(s)	791
Bse8I	GATNNNNATC	1 cut(s)	189
BseDI	CCNNGG	5 cut(s)	180, 424, 486, 495, 895
BseGI	GGATG	4 cut(s)	366, 766, 883, 967
BseJI	GATNNNNATC	1 cut(s)	189
BseLI	CCNNNNNNNGG	7 cut(s)	181, 305, 607, 777, 870, 901, 914
BseMII	CTCAG	3 cut(s)	77, 348, 945
BseNI	ACTGG	1 cut(s)	791
BseRI	GAGGAG	2 cut(s)	157, 160
BseX3I	CGGCCG	1 cut(s)	247
Bsh1285I	CGRYCG	1 cut(s)	250
BshFI	GGCC	2 cut(s)	21, 249
BshTI	ACCGGT	1 cut(s)	305
BsiEI	CGRYCG	1 cut(s)	250
BsiHKCI	CYCGRG	1 cut(s)	895
BsiSI	CCGG	2 cut(s)	306, 896
BslFI	GGGAC	1 cut(s)	583
BslI	CCNNNNNNNGG	7 cut(s)	181, 305, 607, 777, 870, 901, 914
BsmAI	GTCTC	1 cut(s)	122
BsmBI	CGTCTC	1 cut(s)	122
BsmFI	GGGAC	1 cut(s)	583
BsnI	GGCC	2 cut(s)	21, 249
BsoBI	CYCGRG	1 cut(s)	895
Bsp1286I	GDGCHC	1 cut(s)	351
Bsp143I	GATC	5 cut(s)	295, 330, 719, 880, 904
Bsp19I	CCATGG	2 cut(s)	180, 424
BspACI	CCGC	5 cut(s)	154, 177, 578, 875, 926
BspANI	GGCC	2 cut(s)	21, 249
BspCNI	CTCAG	3 cut(s)	76, 347, 946
BspLI	GGNNCC	5 cut(s)	537, 598, 599, 721, 906
BspPI	GGATC	6 cut(s)	290, 714, 727, 875, 899, 912
BsrBI	CCGCTC	1 cut(s)	156
BsrFI	RCCGGY	1 cut(s)	305
BsrI	ACTGG	1 cut(s)	791
BssAI	RCCGGY	1 cut(s)	305
BssECI	CCNNGG	5 cut(s)	180, 424, 486, 495, 895
BssMI	GATC	5 cut(s)	295, 330, 719, 880, 904
BssNAI	GTATAC	1 cut(s)	208
BssSI	CACGAG	1 cut(s)	865
BssT1I	CCWWGG	4 cut(s)	180, 424, 486, 495
Bst1107I	GTATAC	1 cut(s)	208
Bst2BI	CACGAG	1 cut(s)	865
Bst4CI	ACNGT	5 cut(s)	76, 355, 728, 811, 991
Bst6I	CTCTTC	1 cut(s)	106
BstC8I	GCNNGC	1 cut(s)	682
BstDEI	CTNAG	3 cut(s)	63, 334, 954
BstDSI	CCRYGG	2 cut(s)	180, 424
BstEII	GGTNACC	1 cut(s)	447
BstF5I	GGATG	4 cut(s)	366, 766, 883, 967
BstH2I	RGCGCY	2 cut(s)	584, 687
BstHHI	GCGC	2 cut(s)	583, 686
BstKTI	GATC	5 cut(s)	298, 333, 722, 883, 907
BstMAI	GTCTC	1 cut(s)	122
BstMBI	GATC	5 cut(s)	295, 330, 719, 880, 904
BstMCI	CGRYCG	1 cut(s)	250
BstMWI	GCNNNNNNNGC	1 cut(s)	692
BstPI	GGTNACC	1 cut(s)	447
BstSCI	CCNGG	2 cut(s)	894, 895
BstX2I	RGATCY	2 cut(s)	719, 904
BstXI	CCANNNNNNTGG	2 cut(s)	431, 627
BstYI	RGATCY	2 cut(s)	719, 904
BstZ17I	GTATAC	1 cut(s)	208
BstZI	CGGCCG	1 cut(s)	247
BsuI	GTATCC	1 cut(s)	178
BsuRI	GGCC	2 cut(s)	21, 249
BtgI	CCRYGG	2 cut(s)	180, 424
BtrI	CACGTC	1 cut(s)	116
BtsCI	GGATG	4 cut(s)	366, 766, 883, 967
BtsIMutI	CAGTG	4 cut(s)	72, 198, 351, 996
Cac8I	GCNNGC	1 cut(s)	682
CfoI	GCGC	2 cut(s)	583, 686
Cfr10I	RCCGGY	1 cut(s)	305
Cfr13I	GGNCC	3 cut(s)	28, 597, 617
Cfr9I	CCCGGG	1 cut(s)	895
CseI	GACGC	1 cut(s)	332
CspAI	ACCGGT	1 cut(s)	305
CviAII	CATG	5 cut(s)	37, 181, 425, 573, 703
DdeI	CTNAG	3 cut(s)	63, 334, 954
DpnI	GATC	5 cut(s)	297, 332, 721, 882, 906
DpnII	GATC	5 cut(s)	295, 330, 719, 880, 904
EaeI	YGGCCR	1 cut(s)	247
EagI	CGGCCG	1 cut(s)	247
Eam1104I	CTCTTC	1 cut(s)	106
EarI	CTCTTC	1 cut(s)	106
EciI	GGCGGA	1 cut(s)	890
EclXI	CGGCCG	1 cut(s)	247
Eco130I	CCWWGG	4 cut(s)	180, 424, 486, 495
Eco24I	GRGCYC	1 cut(s)	351
Eco47I	GGWCC	3 cut(s)	28, 597, 617
Eco52I	CGGCCG	1 cut(s)	247
Eco57I	CTGAAG	1 cut(s)	222
Eco88I	CYCGRG	1 cut(s)	895
Eco91I	GGTNACC	1 cut(s)	447
EcoO109I	RGGNCCY	1 cut(s)	597
EcoO65I	GGTNACC	1 cut(s)	447
EcoT14I	CCWWGG	4 cut(s)	180, 424, 486, 495
EcoT38I	GRGCYC	1 cut(s)	351
ErhI	CCWWGG	4 cut(s)	180, 424, 486, 495
Esp3I	CGTCTC	1 cut(s)	122
FaeI	CATG	5 cut(s)	40, 184, 428, 576, 706
FaqI	GGGAC	1 cut(s)	583
FatI	CATG	5 cut(s)	36, 180, 424, 572, 702
FauI	CCCGC	2 cut(s)	161, 184
FblI	GTMKAC	1 cut(s)	207
Fnu4HI	GCNGC	2 cut(s)	579, 927
FokI	GGATG	4 cut(s)	353, 753, 890, 974
FriOI	GRGCYC	1 cut(s)	351
Fsp4HI	GCNGC	2 cut(s)	579, 927
GlaI	GCGC	2 cut(s)	582, 685
GluI	GCNGC	2 cut(s)	579, 927
GsuI	CTGGAG	1 cut(s)	522
HaeII	RGCGCY	2 cut(s)	584, 687
HaeIII	GGCC	2 cut(s)	21, 249
HapII	CCGG	2 cut(s)	306, 896
HgaI	GACGC	1 cut(s)	332
HhaI	GCGC	2 cut(s)	583, 686
Hin1II	CATG	5 cut(s)	40, 184, 428, 576, 706
Hin6I	GCGC	2 cut(s)	581, 684
HinP1I	GCGC	2 cut(s)	581, 684
HindIII	AAGCTT	2 cut(s)	401, 743
HinfI	GANTC	4 cut(s)	252, 360, 569, 803
HpaII	CCGG	2 cut(s)	306, 896
HphI	GGTGA	2 cut(s)	441, 683
Hpy166II	GTNNAC	3 cut(s)	79, 208, 418
Hpy188I	TCNGA	6 cut(s)	66, 337, 724, 787, 861, 909
Hpy188III	TCNNGA	1 cut(s)	539
Hpy8I	GTNNAC	3 cut(s)	79, 208, 418
Hpy99I	CGWCG	2 cut(s)	728, 832
HpyAV	CCTTC	3 cut(s)	151, 235, 952
HpyCH4III	ACNGT	5 cut(s)	76, 355, 728, 811, 991
HpyCH4IV	ACGT	1 cut(s)	115
HpyCH4V	TGCA	2 cut(s)	766, 973
HpyF10VI	GCNNNNNNNGC	1 cut(s)	692
HpyF3I	CTNAG	3 cut(s)	63, 334, 954
HpySE526I	ACGT	1 cut(s)	115
Hsp92II	CATG	5 cut(s)	40, 184, 428, 576, 706
HspAI	GCGC	2 cut(s)	581, 684
KflI	GGGWCCC	1 cut(s)	597
Kzo9I	GATC	5 cut(s)	295, 330, 719, 880, 904
LmnI	GCTCC	1 cut(s)	541
LpnPI	CCDG	8 cut(s)	319, 330, 552, 633, 666, 804, 909, 926
LweI	GCATC	1 cut(s)	775
MaeII	ACGT	1 cut(s)	115
MaeIII	GTNAC	1 cut(s)	447
MalI	GATC	5 cut(s)	297, 332, 721, 882, 906
MbiI	CCGCTC	1 cut(s)	156
MboI	GATC	5 cut(s)	295, 330, 719, 880, 904
MboII	GAAGA	3 cut(s)	93, 96, 578
MfeI	CAATTG	1 cut(s)	555
MflI	RGATCY	2 cut(s)	719, 904
MhlI	GDGCHC	1 cut(s)	351
MluCI	AATT	4 cut(s)	381, 555, 714, 911
MlyI	GAGTC	1 cut(s)	354
MmeI	TCCRAC	3 cut(s)	308, 747, 884
MseI	TTAA	1 cut(s)	747
MslI	CAYNNNNRTG	2 cut(s)	429, 989
MspI	CCGG	2 cut(s)	306, 896
MspR9I	CCNGG	2 cut(s)	896, 897
MunI	CAATTG	1 cut(s)	555
MwoI	GCNNNNNNNGC	1 cut(s)	692
NciI	CCSGG	2 cut(s)	896, 897
NcoI	CCATGG	2 cut(s)	180, 424
NdeII	GATC	5 cut(s)	295, 330, 719, 880, 904
NlaIII	CATG	5 cut(s)	40, 184, 428, 576, 706
NlaIV	GGNNCC	5 cut(s)	537, 598, 599, 721, 906
NmuCI	GTSAC	1 cut(s)	447
PcsI	WCGNNNNNNNCGW	1 cut(s)	252
PfeI	GAWTC	3 cut(s)	252, 569, 803
PinAI	ACCGGT	1 cut(s)	305
PkrI	GCNGC	2 cut(s)	580, 928
PleI	GAGTC	1 cut(s)	354
PpsI	GAGTC	1 cut(s)	354
PpuMI	RGGWCCY	1 cut(s)	597
Psp5II	RGGWCCY	1 cut(s)	597
PspEI	GGTNACC	1 cut(s)	447
PspN4I	GGNNCC	5 cut(s)	537, 598, 599, 721, 906
PspPI	GGNCC	3 cut(s)	28, 597, 617
PspPPI	RGGWCCY	1 cut(s)	597
PsuI	RGATCY	2 cut(s)	719, 904
RseI	CAYNNNNRTG	2 cut(s)	429, 989
SaqAI	TTAA	1 cut(s)	747
SatI	GCNGC	2 cut(s)	579, 927
Sau3AI	GATC	5 cut(s)	295, 330, 719, 880, 904
Sau96I	GGNCC	3 cut(s)	28, 597, 617
SchI	GAGTC	1 cut(s)	354
ScrFI	CCNGG	2 cut(s)	896, 897
SduI	GDGCHC	1 cut(s)	351
SfaNI	GCATC	1 cut(s)	775
SinI	GGWCC	3 cut(s)	28, 597, 617
SmaI	CCCGGG	1 cut(s)	897
SmiMI	CAYNNNNRTG	2 cut(s)	429, 989
Sse9I	AATT	4 cut(s)	381, 555, 714, 911
SsiI	CCGC	5 cut(s)	154, 177, 578, 875, 926
StyD4I	CCNGG	2 cut(s)	894, 895
StyI	CCWWGG	4 cut(s)	180, 424, 486, 495
TaaI	ACNGT	5 cut(s)	76, 355, 728, 811, 991
TaiI	ACGT	1 cut(s)	118
TaqI	TCGA	3 cut(s)	255, 312, 806
TaqII	GACCGA	1 cut(s)	16
TasI	AATT	4 cut(s)	381, 555, 714, 911
TauI	GCSGC	2 cut(s)	581, 929
TfiI	GAWTC	3 cut(s)	252, 569, 803
Tru1I	TTAA	1 cut(s)	747
Tru9I	TTAA	1 cut(s)	747
TscAI	CASTG	4 cut(s)	79, 205, 358, 996
TseFI	GTSAC	1 cut(s)	447
Tsp45I	GTSAC	1 cut(s)	447
TspDTI	ATGAA	2 cut(s)	133, 561
TspGWI	ACGGA	1 cut(s)	873
TspMI	CCCGGG	1 cut(s)	895
TspRI	CASTG	4 cut(s)	79, 205, 358, 996
VpaK11BI	GGWCC	3 cut(s)	28, 597, 617
XmaI	CCCGGG	1 cut(s)	895
XmiI	GTMKAC	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.