Prupe.8G121400_v2.0.a1

Carboxylesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000397
Physical Location & Seq
Reverse (-)
14748068 .. 14749018
951 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G121400.1

Sequence Viewer

Length: 951 bp
ATGAGCAACGAAGAATTAGCCTATGATTTCTCTCCGATGATTAAAGTATACAAAGATGGTCGAGTTGAAAGACTCAATGACACAGACAGAGTTCCTCCATCAACAGATCCCAAAACTGGCGTCCAATCAAAAGACGTTGTGATCTCACAAGAACCAGCCATATCTGCAAGGCTTTACATCCCAAAATCCACCACCACAAGCGCACCCCAAACCAAACTCCCTCTTCTCATTTACTTTCATGGAGGCGGCTTCTGCGTTCGAAGTTCATCTTCTGCAAAATATCACAGCTACCTCAACGCCTTAGTGTCTGAGGCCAATGTTGTTGCAGTCTCTGTTGACTACAGACTTGTTCCAGAGCACCCTCTGCCGGCTGCTTACGATGATTCATGGGCTGCTCTCAAATGGGTTGCCTCCCATTCCGATGGAAACGGCTCTGAAGATTGGCTAAATAGATTTGCAGATTTCCAACGAGTGTTTTTCGCTGGGAACAGTGCTGGGGCTAATATAACGCACAACATGGCTGTGAAATTGGGGTGTGAGGGATTGGTTGGTGTTAAGTTGATTGGGATTGTTTTGGAGCATCCATACTTTTGGGGCACAGAGCCAGTTGGGGAAGAGTTAACTACTCCTGCAGCTGCAAGAGAGTATATGGCTGGTGTGTGGCGTTTTGCTTGCCCTTCGACTAGTGGATCCGACGACCCGCTTATAAACCCGGCTAAGGATCAGAAATTGGGTAAATTGGGTTGTGAGAAAGTGCTGGTTTGTGTTGCTGAGAAAGATGTGTTGAAAGATAGAGGATGGCATTATAGTGAGACACTGAAAAAGAGTGGGTGGAATGGGGCTGTGGAGGTCATAGAAGCAGCGGGGGAGGGGCATTCGTTCCATTTGGGAGATCCAACTTGTGACAATGCTGTGGCCATGAAGAAAAAAATTGTTGCTTTCTTGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

317

Amino Acids

34.42

Weight (kDa)

5.87

Isoelectric Point (pI)

35.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000397)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48690 AT3G48700
fragaria_vesca FvH4_2g06400 FvH4_2g06430 FvH4_2g06450 FvH4_2g06480 FvH4_2g06560
malus_domestica MD05G1076400.v1.1 MD05G1076500.v1.1 MD05G1078900.v1.1 MD05G1191000.v1.1 MD05G1191100.v1.1 MD08G1226300.v1.1 MD10G1091000.v1.1 MD10G1091200.v1.1 MD10G1091400.v1.1 MD10G1091600.v1.1 MD10G1091900.v1.1
prunus_persica Prupe.8G120800_v2.0.a1 Prupe.8G121100_v2.0.a1 Prupe.8G121200_v2.0.a1 Prupe.8G121300_v2.0.a1 Prupe.8G121400_v2.0.a1 Prupe.8G121500_v2.0.a1 Prupe.8G121600_v2.0.a1 Prupe.8G121700_v2.0.a1 Prupe.8G121900_v2.0.a1 Prupe.8G122000_v2.0.a1 Prupe.I000800_v2.0.a1
pyrus_communis pycom05g07040 pycom05g17560 pycom05g17680 pycom05g17760 pycom10g07450 pycom10g07470 pycom10g07550
rosa_chinensis RchiOBHm_Chr6g0258271 RchiOBHm_Chr6g0258281 RchiOBHm_Chr6g0258291 RchiOBHm_Chr6g0258311 RchiOBHm_Chr6g0258321 RchiOBHm_Chr6g0258501
rosa_laevigata RLG00000014606 RLG00000014621 RLG00000014622 RLG00000014624 RLG00000014625 RLG00000014627 RLG00000014629 RLG00000014633 RLG00000014635
rosa_multiflora Rmu_co8014592.1_g000001 Rmu_co8366243.1_g000001 Rmu_sc0001663.1_g000004 Rmu_sc0005877.1_g000001 Rmu_sc0005877.1_g000006 Rmu_sc0005877.1_g000007 Rmu_sc0007367.1_g000009 Rmu_sc0007367.1_g000019 Rmu_sc0010616.1_g000022 Rmu_sc0010616.1_g000023 Rmu_ssc0000213.1_g000009
rosa_roxburghii Rroxscaffold_178G00437230 Rroxscaffold_178G00437250 Rroxscaffold_178G00437280 Rroxscaffold_178G00437320 Rroxscaffold_178G00437340 Rroxscaffold_178G00437350 Rroxscaffold_178G00437480 Rroxscaffold_7G00205390 Rroxscaffold_7G00205410 Rroxscaffold_7G00205450 Rroxscaffold_7G00205490 Rroxscaffold_7G00205510 Rroxscaffold_7G00205520 Rroxscaffold_7G00205670 Rroxscaffold_7G00205730
rosa_rugosa Rorug05G0579800 Rorug05G0580500 Rorug05G0580600 Rorug05G0580700 Rorug05G0580900 Rorug05G0581000 Rorug05G0581900
rosa_samantha Rh6CG084800 Rh6CG085100 Rh6CG085200 Rh6CG085400 Rh6CG085500 Rh6CG085600 Rh6CG085700 Rh6CG086900
rosa_wichuraiana Rw6G008300 Rw6G008310 Rw6G008360 Rw6G008370 Rw6G008380 Rw6G008390 Rw6G008430 Rw6G008440 Rw6G008530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 707
AccI GTMKAC 1 cut(s) 48
AciI CCGC 3 cut(s) 246, 701, 863
AclWI GGATC 5 cut(s) 101, 684, 697, 729, 887
AcoI YGGCCR 1 cut(s) 915
AcuI CTGAAG 1 cut(s) 456
AcyI GRCGYC 1 cut(s) 120
AfiI CCNNNNNNNGG 3 cut(s) 116, 367, 718
AgsI TTSAA 3 cut(s) 68, 787, 946
AhlI ACTAGT 1 cut(s) 683
AluBI AGCT 2 cut(s) 288, 635
AluI AGCT 2 cut(s) 288, 635
Alw21I GWGCWC 1 cut(s) 360
Alw26I GTCTC 2 cut(s) 334, 806
AlwI GGATC 5 cut(s) 101, 684, 697, 729, 887
AlwNI CAGNNNCTG 1 cut(s) 332
AoxI GGCC 2 cut(s) 312, 915
ApeKI GCWGC 5 cut(s) 371, 392, 632, 635, 860
ArsI GACNNNNNNTTYG 2 cut(s) 105, 137
AspLEI GCGC 1 cut(s) 203
AsuC2I CCSGG 1 cut(s) 713
AsuII TTCGAA 1 cut(s) 259
BaeGI GKGCMC 1 cut(s) 599
BalI TGGCCA 1 cut(s) 917
BamHI GGATCC 1 cut(s) 689
Bbv12I GWGCWC 1 cut(s) 360
BbvI GCAGC 5 cut(s) 358, 379, 622, 644, 872
BccI CCATC 4 cut(s) 50, 106, 416, 792
BceAI ACGGC 1 cut(s) 445
BcnI CCSGG 1 cut(s) 713
BcoDI GTCTC 2 cut(s) 334, 806
BcuI ACTAGT 1 cut(s) 683
BfaI CTAG 1 cut(s) 684
BfmI CTRYAG 2 cut(s) 340, 630
BisI GCNGC 6 cut(s) 247, 372, 393, 633, 636, 861
BlsI GCNGC 6 cut(s) 248, 373, 394, 634, 637, 862
Bme1390I CCNGG 1 cut(s) 713
BmiI GGNNCC 1 cut(s) 691
BmrFI CCNGG 1 cut(s) 713
BmsI GCATC 1 cut(s) 589
Bpu10I CCTNAGC 1 cut(s) 717
Bpu14I TTCGAA 1 cut(s) 259
BpuMI CCSGG 1 cut(s) 713
BsaHI GRCGYC 1 cut(s) 120
Bsc4I CCNNNNNNNGG 3 cut(s) 116, 367, 718
Bse118I RCCGGY 1 cut(s) 367
Bse1I ACTGG 2 cut(s) 121, 605
BseGI GGATG 3 cut(s) 177, 580, 803
BseLI CCNNNNNNNGG 3 cut(s) 116, 367, 718
BseMII CTCAG 2 cut(s) 300, 762
BseNI ACTGG 2 cut(s) 121, 605
BseSI GKGCMC 1 cut(s) 599
BseXI GCAGC 5 cut(s) 358, 379, 622, 644, 872
BseYI CCCAGC 2 cut(s) 482, 494
BshFI GGCC 2 cut(s) 314, 917
BsiHKAI GWGCWC 1 cut(s) 360
BsiSI CCGG 2 cut(s) 368, 713
BslI CCNNNNNNNGG 3 cut(s) 116, 367, 718
BsmAI GTCTC 2 cut(s) 334, 806
BsmI GAATGC 1 cut(s) 874
BsnI GGCC 2 cut(s) 314, 917
Bsp119I TTCGAA 1 cut(s) 259
Bsp1286I GDGCHC 2 cut(s) 360, 599
Bsp143I GATC 5 cut(s) 106, 141, 689, 721, 892
BspACI CCGC 3 cut(s) 246, 701, 863
BspANI GGCC 2 cut(s) 314, 917
BspCNI CTCAG 2 cut(s) 301, 763
BspLI GGNNCC 1 cut(s) 691
BspMAI CTGCAG 1 cut(s) 634
BspPI GGATC 5 cut(s) 101, 684, 697, 729, 887
BspT104I TTCGAA 1 cut(s) 259
BsrFI RCCGGY 1 cut(s) 367
BsrI ACTGG 2 cut(s) 121, 605
BssAI RCCGGY 1 cut(s) 367
BssMI GATC 5 cut(s) 106, 141, 689, 721, 892
BssNAI GTATAC 1 cut(s) 49
BssNI GRCGYC 1 cut(s) 120
Bst1107I GTATAC 1 cut(s) 49
Bst4CI ACNGT 1 cut(s) 491
Bst6I CTCTTC 2 cut(s) 228, 609
BstACI GRCGYC 1 cut(s) 120
BstAPI GCANNNNNTGC 1 cut(s) 364
BstBI TTCGAA 1 cut(s) 259
BstC8I GCNNGC 2 cut(s) 369, 673
BstDEI CTNAG 4 cut(s) 301, 309, 717, 771
BstF5I GGATG 3 cut(s) 177, 580, 803
BstHHI GCGC 1 cut(s) 203
BstKTI GATC 5 cut(s) 109, 144, 692, 724, 895
BstMAI GTCTC 2 cut(s) 334, 806
BstMBI GATC 5 cut(s) 106, 141, 689, 721, 892
BstMWI GCNNNNNNNGC 3 cut(s) 164, 252, 364
BstSCI CCNGG 1 cut(s) 711
BstSFI CTRYAG 2 cut(s) 340, 630
BstSLI GKGCMC 1 cut(s) 599
BstV1I GCAGC 5 cut(s) 358, 379, 622, 644, 872
BstX2I RGATCY 3 cut(s) 106, 689, 892
BstXI CCANNNNNNTGG 2 cut(s) 422, 591
BstYI RGATCY 3 cut(s) 106, 689, 892
BstZ17I GTATAC 1 cut(s) 49
BsuRI GGCC 2 cut(s) 314, 917
BtsCI GGATG 3 cut(s) 177, 580, 803
BtsIMutI CAGTG 2 cut(s) 496, 815
Cac8I GCNNGC 2 cut(s) 369, 673
CaiI CAGNNNCTG 1 cut(s) 332
CfoI GCGC 1 cut(s) 203
Cfr10I RCCGGY 1 cut(s) 367
CseI GACGC 1 cut(s) 109
CviAII CATG 4 cut(s) 239, 387, 517, 919
DdeI CTNAG 4 cut(s) 301, 309, 717, 771
DpnI GATC 5 cut(s) 108, 143, 691, 723, 894
DpnII GATC 5 cut(s) 106, 141, 689, 721, 892
EaeI YGGCCR 1 cut(s) 915
Eam1104I CTCTTC 2 cut(s) 228, 609
EarI CTCTTC 2 cut(s) 228, 609
Eco57I CTGAAG 1 cut(s) 456
FaeI CATG 4 cut(s) 242, 390, 520, 922
FalI AAGNNNNNCTT 2 cut(s) 253, 285
FatI CATG 4 cut(s) 238, 386, 516, 918
FauI CCCGC 2 cut(s) 708, 856
FblI GTMKAC 1 cut(s) 48
Fnu4HI GCNGC 6 cut(s) 247, 372, 393, 633, 636, 861
FokI GGATG 3 cut(s) 164, 567, 810
Fsp4HI GCNGC 6 cut(s) 247, 372, 393, 633, 636, 861
FspBI CTAG 1 cut(s) 684
GlaI GCGC 1 cut(s) 202
GluI GCNGC 6 cut(s) 247, 372, 393, 633, 636, 861
GsaI CCCAGC 2 cut(s) 486, 498
HaeIII GGCC 2 cut(s) 314, 917
HapII CCGG 2 cut(s) 368, 713
HgaI GACGC 1 cut(s) 109
HhaI GCGC 1 cut(s) 203
Hin1I GRCGYC 1 cut(s) 120
Hin1II CATG 4 cut(s) 242, 390, 520, 922
Hin6I GCGC 1 cut(s) 201
HinP1I GCGC 1 cut(s) 201
HincII GTYRAC 2 cut(s) 337, 621
HindII GTYRAC 2 cut(s) 337, 621
HinfI GANTC 2 cut(s) 72, 383
HpaI GTTAAC 1 cut(s) 621
HpaII CCGG 2 cut(s) 368, 713
Hpy166II GTNNAC 3 cut(s) 49, 337, 621
Hpy188I TCNGA 6 cut(s) 36, 310, 421, 436, 694, 726
Hpy188III TCNNGA 2 cut(s) 353, 943
Hpy8I GTNNAC 3 cut(s) 49, 337, 621
Hpy99I CGWCG 1 cut(s) 698
HpyAV CCTTC 1 cut(s) 687
HpyCH4III ACNGT 1 cut(s) 491
HpyCH4IV ACGT 1 cut(s) 135
HpyCH4V TGCA 6 cut(s) 167, 275, 326, 458, 632, 638
HpyF10VI GCNNNNNNNGC 3 cut(s) 164, 252, 364
HpyF3I CTNAG 4 cut(s) 301, 309, 717, 771
HpySE526I ACGT 1 cut(s) 135
Hsp92I GRCGYC 1 cut(s) 120
Hsp92II CATG 4 cut(s) 242, 390, 520, 922
HspAI GCGC 1 cut(s) 201
KroI GCCGGC 1 cut(s) 367
KroNI GCCGGC 1 cut(s) 369
KspAI GTTAAC 1 cut(s) 621
Kzo9I GATC 5 cut(s) 106, 141, 689, 721, 892
LmnI GCTCC 1 cut(s) 577
Lsp1109I GCAGC 5 cut(s) 358, 379, 622, 644, 872
LweI GCATC 1 cut(s) 589
MaeI CTAG 1 cut(s) 684
MaeII ACGT 1 cut(s) 135
MaeIII GTNAC 1 cut(s) 902
MalI GATC 5 cut(s) 108, 143, 691, 723, 894
MboI GATC 5 cut(s) 106, 141, 689, 721, 892
MboII GAAGA 6 cut(s) 23, 215, 261, 449, 626, 934
MflI RGATCY 3 cut(s) 106, 689, 892
MhlI GDGCHC 2 cut(s) 360, 599
MlsI TGGCCA 1 cut(s) 917
MluCI AATT 6 cut(s) 14, 527, 728, 737, 930, 946
MluNI TGGCCA 1 cut(s) 917
MlyI GAGTC 1 cut(s) 66
MmeI TCCRAC 3 cut(s) 490, 717, 920
Mox20I TGGCCA 1 cut(s) 917
MroNI GCCGGC 1 cut(s) 367
MscI TGGCCA 1 cut(s) 917
MseI TTAA 3 cut(s) 42, 555, 620
MslI CAYNNNNRTG 3 cut(s) 420, 521, 807
Msp20I TGGCCA 1 cut(s) 917
MspA1I CMGCKG 2 cut(s) 635, 863
MspI CCGG 2 cut(s) 368, 713
MspR9I CCNGG 1 cut(s) 713
Mva1269I GAATGC 1 cut(s) 874
MwoI GCNNNNNNNGC 3 cut(s) 164, 252, 364
NaeI GCCGGC 1 cut(s) 369
NciI CCSGG 1 cut(s) 713
NdeII GATC 5 cut(s) 106, 141, 689, 721, 892
NgoMIV GCCGGC 1 cut(s) 367
NlaIII CATG 4 cut(s) 242, 390, 520, 922
NlaIV GGNNCC 1 cut(s) 691
NmuCI GTSAC 1 cut(s) 902
NspV TTCGAA 1 cut(s) 259
PctI GAATGC 1 cut(s) 874
PdiI GCCGGC 1 cut(s) 369
PfeI GAWTC 1 cut(s) 383
PkrI GCNGC 6 cut(s) 248, 373, 394, 634, 637, 862
PleI GAGTC 1 cut(s) 66
PpsI GAGTC 1 cut(s) 66
PsiI TTATAA 1 cut(s) 707
PspFI CCCAGC 2 cut(s) 482, 494
PspN4I GGNNCC 1 cut(s) 691
PstI CTGCAG 1 cut(s) 634
PstNI CAGNNNCTG 1 cut(s) 332
PsuI RGATCY 3 cut(s) 106, 689, 892
PvuII CAGCTG 1 cut(s) 635
RseI CAYNNNNRTG 3 cut(s) 420, 521, 807
SaqAI TTAA 3 cut(s) 42, 555, 620
SatI GCNGC 6 cut(s) 247, 372, 393, 633, 636, 861
Sau3AI GATC 5 cut(s) 106, 141, 689, 721, 892
SchI GAGTC 1 cut(s) 66
ScrFI CCNGG 1 cut(s) 713
SduI GDGCHC 2 cut(s) 360, 599
SetI ASST 5 cut(s) 138, 290, 294, 637, 852
SfaNI GCATC 1 cut(s) 589
SfcI CTRYAG 2 cut(s) 340, 630
SfuI TTCGAA 1 cut(s) 259
SmiMI CAYNNNNRTG 3 cut(s) 420, 521, 807
SpeI ACTAGT 1 cut(s) 683
Sse9I AATT 6 cut(s) 14, 527, 728, 737, 930, 946
SsiI CCGC 3 cut(s) 246, 701, 863
SspMI CTAG 1 cut(s) 684
StyD4I CCNGG 1 cut(s) 711
TaaI ACNGT 1 cut(s) 491
TaiI ACGT 1 cut(s) 138
TaqI TCGA 3 cut(s) 61, 259, 680
TasI AATT 6 cut(s) 14, 527, 728, 737, 930, 946
TauI GCSGC 1 cut(s) 249
TfiI GAWTC 1 cut(s) 383
Tru1I TTAA 3 cut(s) 42, 555, 620
Tru9I TTAA 3 cut(s) 42, 555, 620
TscAI CASTG 2 cut(s) 496, 822
TseFI GTSAC 1 cut(s) 902
TseI GCWGC 5 cut(s) 371, 392, 632, 635, 860
Tsp45I GTSAC 1 cut(s) 902
TspDTI ATGAA 4 cut(s) 227, 255, 375, 935
TspRI CASTG 2 cut(s) 496, 822
XmiI GTMKAC 1 cut(s) 48
XspI CTAG 1 cut(s) 684
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.