MD10G1091400.v1.1

Carboxylesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0000397
Physical Location & Seq
Reverse (-)
13842010 .. 13842639
630 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1091400.v1.1.491

Sequence Viewer

Length: 387 bp
ATGTATCACAACTACCTCAACTCCTTGGCCTCCGCAGCCAATGTTGTCGCAGTCTCTGTTAATTACCGGCTTCACCCCGAGTACCCTCTGCCGGCTGCCTACGATGATTGGTGGGCTGCTGTCAAATGGGTTGCTTCTGTTAATTCCCATGTCTATGGAAACGGTTCAGAAGATTGGTTAAACCTCCTTGCGGATTTTCATCGTGTTTTCTCGGCCGGCGACAGTGCTGGGGCTAATATAGCATACCAGATGGGATTGAGAGTAGGCTCTGAGGGCTTGGTTGGTGGTGCTAAGCTGATTGGGGTTGTTTTGATCCATCCATATTTCTGGGGGACAGAGCCAGTTAGGGCGGATGAGCTGTCCACGCCTGCACGTATAAGAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

129

Amino Acids

14.03

Weight (kDa)

5.64

Isoelectric Point (pI)

28.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_3 PF07859 2 - 112 7.8e-27 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000397)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48690 AT3G48700
fragaria_vesca FvH4_2g06400 FvH4_2g06430 FvH4_2g06450 FvH4_2g06480 FvH4_2g06560
malus_domestica MD05G1076400.v1.1 MD05G1076500.v1.1 MD05G1078900.v1.1 MD05G1191000.v1.1 MD05G1191100.v1.1 MD08G1226300.v1.1 MD10G1091000.v1.1 MD10G1091200.v1.1 MD10G1091400.v1.1 MD10G1091600.v1.1 MD10G1091900.v1.1
prunus_persica Prupe.8G120800_v2.0.a1 Prupe.8G121100_v2.0.a1 Prupe.8G121200_v2.0.a1 Prupe.8G121300_v2.0.a1 Prupe.8G121400_v2.0.a1 Prupe.8G121500_v2.0.a1 Prupe.8G121600_v2.0.a1 Prupe.8G121700_v2.0.a1 Prupe.8G121900_v2.0.a1 Prupe.8G122000_v2.0.a1 Prupe.I000800_v2.0.a1
pyrus_communis pycom05g07040 pycom05g17560 pycom05g17680 pycom05g17760 pycom10g07450 pycom10g07470 pycom10g07550
rosa_chinensis RchiOBHm_Chr6g0258271 RchiOBHm_Chr6g0258281 RchiOBHm_Chr6g0258291 RchiOBHm_Chr6g0258311 RchiOBHm_Chr6g0258321 RchiOBHm_Chr6g0258501
rosa_laevigata RLG00000014606 RLG00000014621 RLG00000014622 RLG00000014624 RLG00000014625 RLG00000014627 RLG00000014629 RLG00000014633 RLG00000014635
rosa_multiflora Rmu_co8014592.1_g000001 Rmu_co8366243.1_g000001 Rmu_sc0001663.1_g000004 Rmu_sc0005877.1_g000001 Rmu_sc0005877.1_g000006 Rmu_sc0005877.1_g000007 Rmu_sc0007367.1_g000009 Rmu_sc0007367.1_g000019 Rmu_sc0010616.1_g000022 Rmu_sc0010616.1_g000023 Rmu_ssc0000213.1_g000009
rosa_roxburghii Rroxscaffold_178G00437230 Rroxscaffold_178G00437250 Rroxscaffold_178G00437280 Rroxscaffold_178G00437320 Rroxscaffold_178G00437340 Rroxscaffold_178G00437350 Rroxscaffold_178G00437480 Rroxscaffold_7G00205390 Rroxscaffold_7G00205410 Rroxscaffold_7G00205450 Rroxscaffold_7G00205490 Rroxscaffold_7G00205510 Rroxscaffold_7G00205520 Rroxscaffold_7G00205670 Rroxscaffold_7G00205730
rosa_rugosa Rorug05G0579800 Rorug05G0580500 Rorug05G0580600 Rorug05G0580700 Rorug05G0580900 Rorug05G0581000 Rorug05G0581900
rosa_samantha Rh6CG084800 Rh6CG085100 Rh6CG085200 Rh6CG085400 Rh6CG085500 Rh6CG085600 Rh6CG085700 Rh6CG086900
rosa_wichuraiana Rw6G008300 Rw6G008310 Rw6G008360 Rw6G008370 Rw6G008380 Rw6G008390 Rw6G008430 Rw6G008440 Rw6G008530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 33, 191, 350
AclWI GGATC 1 cut(s) 307
AcoI YGGCCR 1 cut(s) 213
AfaI GTAC 1 cut(s) 83
AfiI CCNNNNNNNGG 2 cut(s) 91, 190
AluBI AGCT 2 cut(s) 295, 358
AluI AGCT 2 cut(s) 295, 358
Alw26I GTCTC 1 cut(s) 58
AlwI GGATC 1 cut(s) 307
AlwNI CAGNNNCTG 1 cut(s) 56
Ama87I CYCGRG 1 cut(s) 77
AoxI GGCC 2 cut(s) 27, 213
ApeKI GCWGC 3 cut(s) 35, 95, 116
Asp700I GAANNNNTTC 1 cut(s) 163
AsuHPI GGTGA 1 cut(s) 65
AvaI CYCGRG 1 cut(s) 77
BbvI GCAGC 3 cut(s) 47, 82, 103
BccI CCATC 2 cut(s) 244, 324
BcoDI GTCTC 1 cut(s) 58
BisI GCNGC 3 cut(s) 36, 96, 117
BlpI GCTNAGC 1 cut(s) 291
BlsI GCNGC 3 cut(s) 37, 97, 118
BmeT110I CYCGRG 1 cut(s) 77
Bpu1102I GCTNAGC 1 cut(s) 291
BsaAI YACGTR 1 cut(s) 374
BsaBI GATNNNNATC 1 cut(s) 198
BsaJI CCNNGG 1 cut(s) 24
BsaXI ACNNNNNCTCC 2 cut(s) 5, 35
Bsc4I CCNNNNNNNGG 2 cut(s) 91, 190
Bse118I RCCGGY 3 cut(s) 66, 91, 215
Bse1I ACTGG 1 cut(s) 341
Bse8I GATNNNNATC 1 cut(s) 198
BseDI CCNNGG 1 cut(s) 24
BseGI GGATG 2 cut(s) 316, 358
BseJI GATNNNNATC 1 cut(s) 198
BseLI CCNNNNNNNGG 2 cut(s) 91, 190
BseMII CTCAG 1 cut(s) 261
BseNI ACTGG 1 cut(s) 341
BseX3I CGGCCG 1 cut(s) 213
BseXI GCAGC 3 cut(s) 47, 82, 103
BseYI CCCAGC 1 cut(s) 227
BsgI GTGCAG 1 cut(s) 354
Bsh1285I CGRYCG 1 cut(s) 216
BshFI GGCC 2 cut(s) 29, 215
BsiEI CGRYCG 1 cut(s) 216
BsiHKCI CYCGRG 1 cut(s) 77
BsiSI CCGG 3 cut(s) 67, 92, 216
BslFI GGGAC 1 cut(s) 346
BslI CCNNNNNNNGG 2 cut(s) 91, 190
BsmAI GTCTC 1 cut(s) 58
BsmFI GGGAC 1 cut(s) 346
BsnI GGCC 2 cut(s) 29, 215
BsoBI CYCGRG 1 cut(s) 77
Bsp143I GATC 1 cut(s) 312
Bsp1720I GCTNAGC 1 cut(s) 291
BspACI CCGC 3 cut(s) 33, 191, 350
BspANI GGCC 2 cut(s) 29, 215
BspCNI CTCAG 1 cut(s) 262
BspPI GGATC 1 cut(s) 307
BsrFI RCCGGY 3 cut(s) 66, 91, 215
BsrI ACTGG 1 cut(s) 341
BssAI RCCGGY 3 cut(s) 66, 91, 215
BssECI CCNNGG 1 cut(s) 24
BssMI GATC 1 cut(s) 312
BssT1I CCWWGG 1 cut(s) 24
Bst4CI ACNGT 2 cut(s) 164, 224
BstBAI YACGTR 1 cut(s) 374
BstC8I GCNNGC 3 cut(s) 93, 217, 369
BstDEI CTNAG 2 cut(s) 270, 291
BstF5I GGATG 2 cut(s) 316, 358
BstKTI GATC 1 cut(s) 315
BstMAI GTCTC 1 cut(s) 58
BstMBI GATC 1 cut(s) 312
BstMCI CGRYCG 1 cut(s) 216
BstMWI GCNNNNNNNGC 4 cut(s) 35, 239, 273, 364
BstV1I GCAGC 3 cut(s) 47, 82, 103
BstXI CCANNNNNNTGG 2 cut(s) 155, 327
BstZI CGGCCG 1 cut(s) 213
BsuRI GGCC 2 cut(s) 29, 215
BtsCI GGATG 2 cut(s) 316, 358
BtsIMutI CAGTG 1 cut(s) 229
Cac8I GCNNGC 3 cut(s) 93, 217, 369
CaiI CAGNNNCTG 1 cut(s) 56
Cfr10I RCCGGY 3 cut(s) 66, 91, 215
Csp6I GTAC 1 cut(s) 82
CviAII CATG 1 cut(s) 149
CviQI GTAC 1 cut(s) 82
DdeI CTNAG 2 cut(s) 270, 291
DpnI GATC 1 cut(s) 314
DpnII GATC 1 cut(s) 312
EaeI YGGCCR 1 cut(s) 213
EagI CGGCCG 1 cut(s) 213
EciI GGCGGA 1 cut(s) 365
EclXI CGGCCG 1 cut(s) 213
Eco130I CCWWGG 1 cut(s) 24
Eco52I CGGCCG 1 cut(s) 213
Eco88I CYCGRG 1 cut(s) 77
EcoT14I CCWWGG 1 cut(s) 24
ErhI CCWWGG 1 cut(s) 24
FaeI CATG 1 cut(s) 152
FaiI YATR 6 cut(s) 150, 156, 239, 244, 322, 377
FaqI GGGAC 1 cut(s) 346
FatI CATG 1 cut(s) 148
Fnu4HI GCNGC 3 cut(s) 36, 96, 117
FokI GGATG 2 cut(s) 303, 365
Fsp4HI GCNGC 3 cut(s) 36, 96, 117
GluI GCNGC 3 cut(s) 36, 96, 117
GsaI CCCAGC 1 cut(s) 231
HaeIII GGCC 2 cut(s) 29, 215
HapII CCGG 3 cut(s) 67, 92, 216
Hin1II CATG 1 cut(s) 152
HpaII CCGG 3 cut(s) 67, 92, 216
HphI GGTGA 1 cut(s) 65
Hpy166II GTNNAC 1 cut(s) 363
Hpy188I TCNGA 2 cut(s) 169, 271
Hpy8I GTNNAC 1 cut(s) 363
HpyCH4III ACNGT 2 cut(s) 164, 224
HpyCH4IV ACGT 1 cut(s) 373
HpyCH4V TGCA 1 cut(s) 371
HpyF10VI GCNNNNNNNGC 4 cut(s) 35, 239, 273, 364
HpyF3I CTNAG 2 cut(s) 270, 291
HpySE526I ACGT 1 cut(s) 373
Hsp92II CATG 1 cut(s) 152
KroI GCCGGC 2 cut(s) 91, 215
KroNI GCCGGC 2 cut(s) 93, 217
Kzo9I GATC 1 cut(s) 312
LpnPI CCDG 8 cut(s) 80, 105, 213, 229, 260, 313, 354, 381
Lsp1109I GCAGC 3 cut(s) 47, 82, 103
MaeII ACGT 1 cut(s) 373
MalI GATC 1 cut(s) 314
MboI GATC 1 cut(s) 312
MboII GAAGA 1 cut(s) 182
MluCI AATT 2 cut(s) 61, 142
MnlI CCTC 5 cut(s) 26, 40, 96, 194, 265
MroNI GCCGGC 2 cut(s) 91, 215
MroXI GAANNNNTTC 1 cut(s) 163
MseI TTAA 3 cut(s) 60, 141, 179
MslI CAYNNNNRTG 1 cut(s) 153
MspI CCGG 3 cut(s) 67, 92, 216
MwoI GCNNNNNNNGC 4 cut(s) 35, 239, 273, 364
NaeI GCCGGC 2 cut(s) 93, 217
NdeII GATC 1 cut(s) 312
NgoMIV GCCGGC 2 cut(s) 91, 215
NlaIII CATG 1 cut(s) 152
NmeAIII GCCGAG 1 cut(s) 191
PdiI GCCGGC 2 cut(s) 93, 217
PdmI GAANNNNTTC 1 cut(s) 163
PkrI GCNGC 3 cut(s) 37, 97, 118
Ppu21I YACGTR 1 cut(s) 374
PspFI CCCAGC 1 cut(s) 227
PstNI CAGNNNCTG 1 cut(s) 56
RsaI GTAC 1 cut(s) 83
RsaNI GTAC 1 cut(s) 82
RseI CAYNNNNRTG 1 cut(s) 153
SaqAI TTAA 3 cut(s) 60, 141, 179
SatI GCNGC 3 cut(s) 36, 96, 117
Sau3AI GATC 1 cut(s) 312
SetI ASST 5 cut(s) 18, 186, 297, 360, 376
SmiMI CAYNNNNRTG 1 cut(s) 153
Sse9I AATT 2 cut(s) 61, 142
SsiI CCGC 3 cut(s) 33, 191, 350
StyI CCWWGG 1 cut(s) 24
TaaI ACNGT 2 cut(s) 164, 224
TaiI ACGT 1 cut(s) 376
TasI AATT 2 cut(s) 61, 142
Tru1I TTAA 3 cut(s) 60, 141, 179
Tru9I TTAA 3 cut(s) 60, 141, 179
TscAI CASTG 1 cut(s) 229
TseI GCWGC 3 cut(s) 35, 95, 116
TspDTI ATGAA 1 cut(s) 188
TspRI CASTG 1 cut(s) 229
XmnI GAANNNNTTC 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.