Rroxscaffold_178G00437250

Carboxylesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000178
OG0000397
Physical Location & Seq
Forward (+)
59909 .. 61135
1227 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_178G00437250.1

Sequence Viewer

Length: 1011 bp
ATGAGCGATGAACTAGCCCATGATTTCTTTCCCATCATCAGAGTCTACAAAGACGGTCGAGTCGACCGACTCTGGGGCACATCCACACTCCCTGCATCCATCGATCCCCAAACCGGTGTTCAATCCAAAGACGTCGTCATCTCAACCGCACCACCCGTCTCTGTAAGGCTTTACATTCCCAAATCCACCACAACCGAGTCAACCCGGAAGCTCCCTCTTCTGGTTTACTTTCACGGCGGTGGCTTCTGCAATGGAAGTGCTTTCTCTCCCACTTATCACAACTACCTCAACTCTTTAGTCTCTGAAGCCAATGTTGTAGCTGTTTCTGTTGACTATAGGTTGGTGCCGGAGCACCCTCTTCCGGCTGCCTATGAAGATTCATGGGCCGCTCTCAAATGGGTGGAGTCCCATTTCGCAGGAAACGGCCCCGAAGATTGGCTGAACCGGCTTGCAGATTTGAACCGGGTTTTCTTTTCAGGTGATAGCGCTGGGGCTAACATAGCTCACCAAATGGGTTTGAGAGTTGGGTGTGAGAAGTTGGTGGGTTTTAAGCTGAATGGGATTGTTCTGGTGCATCCATACTTTTGGGGATCGAAGTTGGGAGAGTTGGGTTGTGAGAAAGTGTTGGTCTGCGTTGCGGAGAAGGATTCGTTGAAAGATAGGGGGTGGTATTACAGTGAGGTGTTGAAGAAGAGTGGATGGAATGGAGTAGTGGAGGTTATGGAAGCAAAGGAGGAGCAGCATGTGTTCCATTTGGTCAATCCTAGTTGTGACAATGCTGTGACCATGCTCAAAGAATCATTCTACAGCCAATATGGTCCAGAACTTCAGATGACATGTTGGAAGCATGCTAAAATTTTCCAGGACACTGCTTATAAGATTGCGGAGAATGTGCTAAATATAATGCTAACAATAAACAATCTACCAAAAGTCACTGAAGAGAAAAAAAAAAATTCTGATTCCAAGTCTCCAAAAAGAAAAGTTAACCATCCTCAAGTAAAAGCACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

336

Amino Acids

37.58

Weight (kDa)

7.16

Isoelectric Point (pI)

33.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COesterase PF00135 57 - 170 3e-09 Carboxylesterase family
BD-FAE PF20434 66 - 176 8.8e-13 BD-FAE
Abhydrolase_3 PF07859 74 - 194 1.8e-36 alpha/beta hydrolase fold
Abhydrolase_3 PF07859 204 - 251 3.1e-06 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000397)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48690 AT3G48700
fragaria_vesca FvH4_2g06400 FvH4_2g06430 FvH4_2g06450 FvH4_2g06480 FvH4_2g06560
malus_domestica MD05G1076400.v1.1 MD05G1076500.v1.1 MD05G1078900.v1.1 MD05G1191000.v1.1 MD05G1191100.v1.1 MD08G1226300.v1.1 MD10G1091000.v1.1 MD10G1091200.v1.1 MD10G1091400.v1.1 MD10G1091600.v1.1 MD10G1091900.v1.1
prunus_persica Prupe.8G120800_v2.0.a1 Prupe.8G121100_v2.0.a1 Prupe.8G121200_v2.0.a1 Prupe.8G121300_v2.0.a1 Prupe.8G121400_v2.0.a1 Prupe.8G121500_v2.0.a1 Prupe.8G121600_v2.0.a1 Prupe.8G121700_v2.0.a1 Prupe.8G121900_v2.0.a1 Prupe.8G122000_v2.0.a1 Prupe.I000800_v2.0.a1
pyrus_communis pycom05g07040 pycom05g17560 pycom05g17680 pycom05g17760 pycom10g07450 pycom10g07470 pycom10g07550
rosa_chinensis RchiOBHm_Chr6g0258271 RchiOBHm_Chr6g0258281 RchiOBHm_Chr6g0258291 RchiOBHm_Chr6g0258311 RchiOBHm_Chr6g0258321 RchiOBHm_Chr6g0258501
rosa_laevigata RLG00000014606 RLG00000014621 RLG00000014622 RLG00000014624 RLG00000014625 RLG00000014627 RLG00000014629 RLG00000014633 RLG00000014635
rosa_multiflora Rmu_co8014592.1_g000001 Rmu_co8366243.1_g000001 Rmu_sc0001663.1_g000004 Rmu_sc0005877.1_g000001 Rmu_sc0005877.1_g000006 Rmu_sc0005877.1_g000007 Rmu_sc0007367.1_g000009 Rmu_sc0007367.1_g000019 Rmu_sc0010616.1_g000022 Rmu_sc0010616.1_g000023 Rmu_ssc0000213.1_g000009
rosa_roxburghii Rroxscaffold_178G00437230 Rroxscaffold_178G00437250 Rroxscaffold_178G00437280 Rroxscaffold_178G00437320 Rroxscaffold_178G00437340 Rroxscaffold_178G00437350 Rroxscaffold_178G00437480 Rroxscaffold_7G00205390 Rroxscaffold_7G00205410 Rroxscaffold_7G00205450 Rroxscaffold_7G00205490 Rroxscaffold_7G00205510 Rroxscaffold_7G00205520 Rroxscaffold_7G00205670 Rroxscaffold_7G00205730
rosa_rugosa Rorug05G0579800 Rorug05G0580500 Rorug05G0580600 Rorug05G0580700 Rorug05G0580900 Rorug05G0581000 Rorug05G0581900
rosa_samantha Rh6CG084800 Rh6CG085100 Rh6CG085200 Rh6CG085400 Rh6CG085500 Rh6CG085600 Rh6CG085700 Rh6CG086900
rosa_wichuraiana Rw6G008300 Rw6G008310 Rw6G008360 Rw6G008370 Rw6G008380 Rw6G008390 Rw6G008430 Rw6G008440 Rw6G008530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 876
AasI GACNNNNNNGTC 1 cut(s) 59
AatII GACGTC 1 cut(s) 135
AccB1I GGYRCC 1 cut(s) 343
AccBSI CCGCTC 1 cut(s) 389
AccI GTMKAC 2 cut(s) 45, 63
AciI CCGC 5 cut(s) 147, 237, 387, 638, 884
AclWI GGATC 2 cut(s) 98, 598
AcsI RAATTY 2 cut(s) 855, 952
AcuI CTGAAG 3 cut(s) 324, 812, 957
AcyI GRCGYC 1 cut(s) 132
AfeI AGCGCT 1 cut(s) 487
AfiI CCNNNNNNNGG 5 cut(s) 73, 113, 220, 361, 435
AflIII ACRYGT 1 cut(s) 836
AgeI ACCGGT 1 cut(s) 113
AgsI TTSAA 4 cut(s) 122, 460, 655, 688
AjnI CCWGG 1 cut(s) 861
AjuI GAANNNNNNNTTGG 2 cut(s) 102, 134
AleI CACNNNNGTG 1 cut(s) 237
AluBI AGCT 4 cut(s) 211, 320, 503, 553
AluI AGCT 4 cut(s) 211, 320, 503, 553
Alw21I GWGCWC 1 cut(s) 354
Alw26I GTCTC 3 cut(s) 163, 304, 972
AlwI GGATC 2 cut(s) 98, 598
Aor51HI AGCGCT 1 cut(s) 487
AoxI GGCC 2 cut(s) 384, 424
ApeKI GCWGC 2 cut(s) 365, 739
ApoI RAATTY 2 cut(s) 855, 952
ArsI GACNNNNNNTTYG 2 cut(s) 120, 152
AsiGI ACCGGT 1 cut(s) 113
AspLEI GCGC 1 cut(s) 488
AspS9I GGNCC 3 cut(s) 384, 425, 818
AsuC2I CCSGG 2 cut(s) 205, 464
AsuHPI GGTGA 2 cut(s) 491, 497
AvaII GGWCC 1 cut(s) 818
BaeGI GKGCMC 1 cut(s) 80
BanI GGYRCC 1 cut(s) 343
Bbv12I GWGCWC 1 cut(s) 354
BbvI GCAGC 2 cut(s) 352, 751
BccI CCATC 4 cut(s) 41, 107, 693, 996
BceAI ACGGC 2 cut(s) 250, 439
BciT130I CCWGG 1 cut(s) 863
BcnI CCSGG 2 cut(s) 205, 464
BcoDI GTCTC 3 cut(s) 163, 304, 972
BfaI CTAG 2 cut(s) 14, 765
BfmI CTRYAG 2 cut(s) 334, 805
BfoI RGCGCY 1 cut(s) 489
BisI GCNGC 3 cut(s) 366, 387, 740
BlsI GCNGC 3 cut(s) 367, 388, 741
Bme1390I CCNGG 3 cut(s) 205, 464, 863
Bme18I GGWCC 1 cut(s) 818
BmgT120I GGNCC 3 cut(s) 384, 425, 818
BmiI GGNNCC 2 cut(s) 345, 427
BmrFI CCNGG 3 cut(s) 205, 464, 863
BmsI GCATC 2 cut(s) 104, 583
BpuEI CTTGAG 1 cut(s) 978
BpuMI CCSGG 2 cut(s) 205, 464
Bsa29I ATCGAT 1 cut(s) 102
BsaHI GRCGYC 1 cut(s) 132
BsaWI WCCGGW 1 cut(s) 113
Bsc4I CCNNNNNNNGG 5 cut(s) 73, 113, 220, 361, 435
Bse118I RCCGGY 2 cut(s) 113, 444
Bse3DI GCAATG 1 cut(s) 256
BseBI CCWGG 1 cut(s) 863
BseCI ATCGAT 1 cut(s) 102
BseGI GGATG 5 cut(s) 80, 95, 574, 704, 988
BseLI CCNNNNNNNGG 5 cut(s) 73, 113, 220, 361, 435
BseMI GCAATG 1 cut(s) 256
BseRI GAGGAG 1 cut(s) 749
BseSI GKGCMC 1 cut(s) 80
BseXI GCAGC 2 cut(s) 352, 751
BseYI CCCAGC 1 cut(s) 488
Bsh1285I CGRYCG 2 cut(s) 58, 67
BshFI GGCC 2 cut(s) 386, 426
BshNI GGYRCC 1 cut(s) 343
BshTI ACCGGT 1 cut(s) 113
BshVI ATCGAT 1 cut(s) 102
BsiEI CGRYCG 2 cut(s) 58, 67
BsiHKAI GWGCWC 1 cut(s) 354
BsiSI CCGG 6 cut(s) 114, 205, 347, 362, 445, 463
BslFI GGGAC 1 cut(s) 391
BslI CCNNNNNNNGG 5 cut(s) 73, 113, 220, 361, 435
BsmAI GTCTC 3 cut(s) 163, 304, 972
BsmBI CGTCTC 1 cut(s) 163
BsmFI GGGAC 1 cut(s) 391
BsnI GGCC 2 cut(s) 386, 426
Bsp1286I GDGCHC 2 cut(s) 80, 354
Bsp143I GATC 2 cut(s) 103, 590
BspACI CCGC 5 cut(s) 147, 237, 387, 638, 884
BspANI GGCC 2 cut(s) 386, 426
BspDI ATCGAT 1 cut(s) 102
BspLI GGNNCC 2 cut(s) 345, 427
BspPI GGATC 2 cut(s) 98, 598
BspT107I GGYRCC 1 cut(s) 343
BsrBI CCGCTC 1 cut(s) 389
BsrDI GCAATG 1 cut(s) 256
BsrFI RCCGGY 2 cut(s) 113, 444
BssAI RCCGGY 2 cut(s) 113, 444
BssMI GATC 2 cut(s) 103, 590
BssNI GRCGYC 1 cut(s) 132
Bst2UI CCWGG 1 cut(s) 863
Bst4CI ACNGT 2 cut(s) 56, 677
Bst6I CTCTTC 4 cut(s) 222, 363, 686, 933
BstACI GRCGYC 1 cut(s) 132
BstC8I GCNNGC 2 cut(s) 450, 849
BstF5I GGATG 5 cut(s) 80, 95, 574, 704, 988
BstH2I RGCGCY 1 cut(s) 489
BstHHI GCGC 1 cut(s) 488
BstKTI GATC 2 cut(s) 106, 593
BstMAI GTCTC 3 cut(s) 163, 304, 972
BstMBI GATC 2 cut(s) 103, 590
BstMCI CGRYCG 2 cut(s) 58, 67
BstMWI GCNNNNNNNGC 2 cut(s) 445, 500
BstNI CCWGG 1 cut(s) 863
BstNSI RCATGY 3 cut(s) 746, 840, 851
BstSCI CCNGG 3 cut(s) 203, 462, 861
BstSFI CTRYAG 2 cut(s) 334, 805
BstSLI GKGCMC 1 cut(s) 80
BstV1I GCAGC 2 cut(s) 352, 751
BstXI CCANNNNNNTGG 1 cut(s) 585
Bsu15I ATCGAT 1 cut(s) 102
BsuRI GGCC 2 cut(s) 386, 426
BsuTUI ATCGAT 1 cut(s) 102
BtgZI GCGATG 1 cut(s) 21
BtsCI GGATG 5 cut(s) 80, 95, 574, 704, 988
BtsI GCAGTG 1 cut(s) 867
BtsIMutI CAGTG 3 cut(s) 682, 867, 933
Cac8I GCNNGC 2 cut(s) 450, 849
CfoI GCGC 1 cut(s) 488
Cfr10I RCCGGY 2 cut(s) 113, 444
Cfr13I GGNCC 3 cut(s) 384, 425, 818
ClaI ATCGAT 1 cut(s) 102
CspAI ACCGGT 1 cut(s) 113
CviAII CATG 6 cut(s) 20, 381, 743, 787, 837, 848
DpnI GATC 2 cut(s) 105, 592
DpnII GATC 2 cut(s) 103, 590
DrdI GACNNNNNNGTC 1 cut(s) 59
DseDI GACNNNNNNGTC 1 cut(s) 59
Eam1104I CTCTTC 4 cut(s) 222, 363, 686, 933
EarI CTCTTC 4 cut(s) 222, 363, 686, 933
Eco47I GGWCC 1 cut(s) 818
Eco47III AGCGCT 1 cut(s) 487
Eco57I CTGAAG 3 cut(s) 324, 812, 957
EcoRII CCWGG 1 cut(s) 861
Esp3I CGTCTC 1 cut(s) 163
FaeI CATG 6 cut(s) 23, 384, 746, 790, 840, 851
FaqI GGGAC 1 cut(s) 391
FatI CATG 6 cut(s) 19, 380, 742, 786, 836, 847
FblI GTMKAC 2 cut(s) 45, 63
Fnu4HI GCNGC 3 cut(s) 366, 387, 740
FokI GGATG 5 cut(s) 67, 82, 561, 711, 975
Fsp4HI GCNGC 3 cut(s) 366, 387, 740
FspBI CTAG 2 cut(s) 14, 765
GlaI GCGC 1 cut(s) 487
GluI GCNGC 3 cut(s) 366, 387, 740
GsaI CCCAGC 1 cut(s) 492
HaeII RGCGCY 1 cut(s) 489
HaeIII GGCC 2 cut(s) 386, 426
HapII CCGG 6 cut(s) 114, 205, 347, 362, 445, 463
HhaI GCGC 1 cut(s) 488
Hin1I GRCGYC 1 cut(s) 132
Hin1II CATG 6 cut(s) 23, 384, 746, 790, 840, 851
Hin6I GCGC 1 cut(s) 486
HinP1I GCGC 1 cut(s) 486
HincII GTYRAC 4 cut(s) 64, 201, 331, 985
HindII GTYRAC 4 cut(s) 64, 201, 331, 985
HinfI GANTC 9 cut(s) 42, 60, 69, 197, 377, 404, 647, 797, 959
HpaI GTTAAC 1 cut(s) 985
HpaII CCGG 6 cut(s) 114, 205, 347, 362, 445, 463
HphI GGTGA 2 cut(s) 491, 497
Hpy166II GTNNAC 6 cut(s) 46, 64, 201, 226, 331, 985
Hpy188I TCNGA 4 cut(s) 41, 304, 831, 958
Hpy188III TCNNGA 1 cut(s) 821
Hpy8I GTNNAC 6 cut(s) 46, 64, 201, 226, 331, 985
Hpy99I CGWCG 1 cut(s) 137
HpyAV CCTTC 1 cut(s) 637
HpyCH4III ACNGT 2 cut(s) 56, 677
HpyCH4IV ACGT 1 cut(s) 132
HpyCH4V TGCA 4 cut(s) 95, 249, 452, 574
HpyF10VI GCNNNNNNNGC 2 cut(s) 445, 500
HpySE526I ACGT 1 cut(s) 132
Hsp92I GRCGYC 1 cut(s) 132
Hsp92II CATG 6 cut(s) 23, 384, 746, 790, 840, 851
HspAI GCGC 1 cut(s) 486
KspAI GTTAAC 1 cut(s) 985
Kzo9I GATC 2 cut(s) 103, 590
LmnI GCTCC 3 cut(s) 216, 349, 736
Lsp1109I GCAGC 2 cut(s) 352, 751
LweI GCATC 2 cut(s) 104, 583
MaeI CTAG 2 cut(s) 14, 765
MaeII ACGT 1 cut(s) 132
MaeIII GTNAC 3 cut(s) 770, 781, 931
MalI GATC 2 cut(s) 105, 592
MbiI CCGCTC 1 cut(s) 389
MboI GATC 2 cut(s) 103, 590
MboII GAAGA 7 cut(s) 209, 350, 386, 443, 700, 703, 950
MhlI GDGCHC 2 cut(s) 80, 354
MluCI AATT 2 cut(s) 855, 952
MlyI GAGTC 5 cut(s) 51, 63, 69, 206, 413
MmeI TCCRAC 1 cut(s) 821
MnlI CCTC 7 cut(s) 225, 296, 366, 673, 709, 727, 1002
MseI TTAA 2 cut(s) 549, 984
MslI CAYNNNNRTG 1 cut(s) 237
MspI CCGG 6 cut(s) 114, 205, 347, 362, 445, 463
MspR9I CCNGG 3 cut(s) 205, 464, 863
MvaI CCWGG 1 cut(s) 863
MwoI GCNNNNNNNGC 2 cut(s) 445, 500
NciI CCSGG 2 cut(s) 205, 464
NdeII GATC 2 cut(s) 103, 590
NlaIII CATG 6 cut(s) 23, 384, 746, 790, 840, 851
NlaIV GGNNCC 2 cut(s) 345, 427
NmuCI GTSAC 3 cut(s) 770, 781, 931
NspI RCATGY 3 cut(s) 746, 840, 851
OliI CACNNNNGTG 1 cut(s) 237
PaeI GCATGC 1 cut(s) 851
PciI ACATGT 1 cut(s) 836
PcsI WCGNNNNNNNCGW 2 cut(s) 60, 64
PfeI GAWTC 4 cut(s) 377, 647, 797, 959
PflFI GACNNNGTC 1 cut(s) 134
PfoI TCCNGGA 1 cut(s) 861
PinAI ACCGGT 1 cut(s) 113
PkrI GCNGC 3 cut(s) 367, 388, 741
PleI GAGTC 5 cut(s) 50, 63, 68, 205, 412
PpsI GAGTC 5 cut(s) 50, 63, 68, 205, 412
PscI ACATGT 1 cut(s) 836
PsiI TTATAA 1 cut(s) 876
Psp6I CCWGG 1 cut(s) 861
PspFI CCCAGC 1 cut(s) 488
PspGI CCWGG 1 cut(s) 861
PspN4I GGNNCC 2 cut(s) 345, 427
PspPI GGNCC 3 cut(s) 384, 425, 818
PsyI GACNNNGTC 1 cut(s) 134
RseI CAYNNNNRTG 1 cut(s) 237
SalI GTCGAC 1 cut(s) 62
SaqAI TTAA 2 cut(s) 549, 984
SatI GCNGC 3 cut(s) 366, 387, 740
Sau3AI GATC 2 cut(s) 103, 590
Sau96I GGNCC 3 cut(s) 384, 425, 818
SchI GAGTC 5 cut(s) 51, 63, 69, 206, 413
ScrFI CCNGG 3 cut(s) 205, 464, 863
SduI GDGCHC 2 cut(s) 80, 354
SfaNI GCATC 2 cut(s) 104, 583
SfcI CTRYAG 2 cut(s) 334, 805
SinI GGWCC 1 cut(s) 818
SmiMI CAYNNNNRTG 1 cut(s) 237
SmlI CTYRAG 1 cut(s) 993
SmoI CTYRAG 1 cut(s) 993
SphI GCATGC 1 cut(s) 851
Sse9I AATT 2 cut(s) 855, 952
SsiI CCGC 5 cut(s) 147, 237, 387, 638, 884
SspMI CTAG 2 cut(s) 14, 765
StyD4I CCNGG 3 cut(s) 203, 462, 861
TaaI ACNGT 2 cut(s) 56, 677
TaiI ACGT 1 cut(s) 135
TaqI TCGA 4 cut(s) 58, 63, 102, 593
TaqII GACCGA 1 cut(s) 81
TasI AATT 2 cut(s) 855, 952
TauI GCSGC 1 cut(s) 389
TfiI GAWTC 4 cut(s) 377, 647, 797, 959
Tru1I TTAA 2 cut(s) 549, 984
Tru9I TTAA 2 cut(s) 549, 984
TscAI CASTG 3 cut(s) 682, 874, 940
TseFI GTSAC 3 cut(s) 770, 781, 931
TseI GCWGC 2 cut(s) 365, 739
Tsp45I GTSAC 3 cut(s) 770, 781, 931
TspDTI ATGAA 3 cut(s) 24, 369, 387
TspRI CASTG 3 cut(s) 682, 874, 940
Tth111I GACNNNGTC 1 cut(s) 134
VpaK11BI GGWCC 1 cut(s) 818
XapI RAATTY 2 cut(s) 855, 952
XceI RCATGY 3 cut(s) 746, 840, 851
XmiI GTMKAC 2 cut(s) 45, 63
XspI CTAG 2 cut(s) 14, 765
ZraI GACGTC 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.