Rroxscaffold_7G00205490

Carboxylesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000397
Physical Location & Seq
Forward (+)
55052317 .. 55070892
18576 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00205490.1

Sequence Viewer

Length: 966 bp
ATGCCGATAGTCCGCTCTGGAGAGACTAGGACCGGCGCGCGGTCACCGGTTTCAATAAGGTTGAAGGTTTGCTCCGAGGGGGCTTTACGTCGTCATCTCAACCGCACCACCCATCTCTGCAAGGCTTTACATTCCCAAATCCACCGCAACCGAGTCAGCCGAGTCAACCCAGAAGCTCCTCTTCTGGTTTACTTTCACGGCGGTGGCTTCTGCGTTGAAAGTGCTTTCTCTCCCACTTATCACAACTACCTCAACTCTTTAGTCTCCGAGGCCAATGTTGCAGCTGTTTCTGTTGAATATAGGCTGGCGCCGGAGCATCCTCTCCCGGCTGCCTATGAAGATTCGTGGGCCGCACTCAAATGGTTGGAGTCCCATCTCGCCGGAAACGGCCCGGAAGACTGGCTGAACCGGTATGCAGATTTGAACAGGGTTTTCTTTTCCGGTGATAGCGCTGGGGCTAACATAGCTCACCACATGGGTTTGAGAGTTGGGTCTGAGAAGTTGGTGGGTTTTAAGCTGAATGGGATTGTTCTGGTGCATCCATACTTTTGGGGTGAAGAACCAATAGGGGAAGAAGTAGCTTTGGCCGAGAGTCTTAGAAAGATGGTGCCTGCTTTGTGGCGGTTTGCTTACCCTTCGACTAGTGGATCCGATGACCCCTTTTTTAATCCGGGTAAGGATCCGAAGTTGGGGGAGTTGGGTTGTGAGAAAGTTTTGGTCTGTGTTGCGGAGAAGGATGGGCTCAAAGATAGGGGGTGGTATTACAGTGAGGTGTTGAAGAAGAGTGGATGGAATGGAGTTGTGGAGGTATCAGAAGCGAAGGAGGAGCAGCATGTGTTCCATTTGTTCAATGCTACTTGTGACAATGCTGTGACCATGCTCAAGAAGATCATAGTCTCCGCTAAGTGCAACTCCGCCAGCGGGATTTCTCCCTCCATCTTCCAAAGCGAGACAGGTCTCCGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

321

Amino Acids

35.45

Weight (kDa)

7.21

Isoelectric Point (pI)

40.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COesterase PF00135 56 - 164 9.6e-06 Carboxylesterase family
BD-FAE PF20434 57 - 167 6.3e-12 BD-FAE
Abhydrolase_3 PF07859 62 - 281 5.4e-54 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000397)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48690 AT3G48700
fragaria_vesca FvH4_2g06400 FvH4_2g06430 FvH4_2g06450 FvH4_2g06480 FvH4_2g06560
malus_domestica MD05G1076400.v1.1 MD05G1076500.v1.1 MD05G1078900.v1.1 MD05G1191000.v1.1 MD05G1191100.v1.1 MD08G1226300.v1.1 MD10G1091000.v1.1 MD10G1091200.v1.1 MD10G1091400.v1.1 MD10G1091600.v1.1 MD10G1091900.v1.1
prunus_persica Prupe.8G120800_v2.0.a1 Prupe.8G121100_v2.0.a1 Prupe.8G121200_v2.0.a1 Prupe.8G121300_v2.0.a1 Prupe.8G121400_v2.0.a1 Prupe.8G121500_v2.0.a1 Prupe.8G121600_v2.0.a1 Prupe.8G121700_v2.0.a1 Prupe.8G121900_v2.0.a1 Prupe.8G122000_v2.0.a1 Prupe.I000800_v2.0.a1
pyrus_communis pycom05g07040 pycom05g17560 pycom05g17680 pycom05g17760 pycom10g07450 pycom10g07470 pycom10g07550
rosa_chinensis RchiOBHm_Chr6g0258271 RchiOBHm_Chr6g0258281 RchiOBHm_Chr6g0258291 RchiOBHm_Chr6g0258311 RchiOBHm_Chr6g0258321 RchiOBHm_Chr6g0258501
rosa_laevigata RLG00000014606 RLG00000014621 RLG00000014622 RLG00000014624 RLG00000014625 RLG00000014627 RLG00000014629 RLG00000014633 RLG00000014635
rosa_multiflora Rmu_co8014592.1_g000001 Rmu_co8366243.1_g000001 Rmu_sc0001663.1_g000004 Rmu_sc0005877.1_g000001 Rmu_sc0005877.1_g000006 Rmu_sc0005877.1_g000007 Rmu_sc0007367.1_g000009 Rmu_sc0007367.1_g000019 Rmu_sc0010616.1_g000022 Rmu_sc0010616.1_g000023 Rmu_ssc0000213.1_g000009
rosa_roxburghii Rroxscaffold_178G00437230 Rroxscaffold_178G00437250 Rroxscaffold_178G00437280 Rroxscaffold_178G00437320 Rroxscaffold_178G00437340 Rroxscaffold_178G00437350 Rroxscaffold_178G00437480 Rroxscaffold_7G00205390 Rroxscaffold_7G00205410 Rroxscaffold_7G00205450 Rroxscaffold_7G00205490 Rroxscaffold_7G00205510 Rroxscaffold_7G00205520 Rroxscaffold_7G00205670 Rroxscaffold_7G00205730
rosa_rugosa Rorug05G0579800 Rorug05G0580500 Rorug05G0580600 Rorug05G0580700 Rorug05G0580900 Rorug05G0581000 Rorug05G0581900
rosa_samantha Rh6CG084800 Rh6CG085100 Rh6CG085200 Rh6CG085400 Rh6CG085500 Rh6CG085600 Rh6CG085700 Rh6CG086900
rosa_wichuraiana Rw6G008300 Rw6G008310 Rw6G008360 Rw6G008370 Rw6G008380 Rw6G008390 Rw6G008430 Rw6G008440 Rw6G008530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 307, 607
AccBSI CCGCTC 1 cut(s) 15
AccII CGCG 2 cut(s) 38, 40
AclWI GGATC 4 cut(s) 642, 655, 674, 687
AcoI YGGCCR 1 cut(s) 585
AcyI GRCGYC 1 cut(s) 308
AfeI AGCGCT 1 cut(s) 451
AfiI CCNNNNNNNGG 3 cut(s) 39, 689, 921
AgeI ACCGGT 2 cut(s) 46, 408
AgsI TTSAA 7 cut(s) 54, 64, 218, 296, 424, 778, 850
AhlI ACTAGT 1 cut(s) 641
AleI CACNNNNGTG 1 cut(s) 201
AluBI AGCT 5 cut(s) 176, 284, 467, 517, 581
AluI AGCT 5 cut(s) 176, 284, 467, 517, 581
Alw26I GTCTC 5 cut(s) 17, 268, 901, 944, 962
AlwI GGATC 4 cut(s) 642, 655, 674, 687
Aor51HI AGCGCT 1 cut(s) 451
AoxI GGCC 4 cut(s) 270, 348, 388, 585
ApeKI GCWGC 3 cut(s) 281, 329, 829
AsiGI ACCGGT 2 cut(s) 46, 408
AspLEI GCGC 4 cut(s) 38, 40, 310, 452
AspS9I GGNCC 3 cut(s) 30, 348, 389
AsuC2I CCSGG 3 cut(s) 326, 392, 672
AsuHPI GGTGA 4 cut(s) 36, 455, 461, 566
AvaII GGWCC 1 cut(s) 30
BamHI GGATCC 2 cut(s) 647, 679
BanI GGYRCC 2 cut(s) 307, 607
BanII GRGCYC 1 cut(s) 744
BbsI GAAGAC 1 cut(s) 402
BbvI GCAGC 3 cut(s) 293, 316, 841
BccI CCATC 6 cut(s) 120, 381, 598, 731, 783, 944
BceAI ACGGC 2 cut(s) 214, 403
BcnI CCSGG 3 cut(s) 326, 392, 672
BcoDI GTCTC 5 cut(s) 17, 268, 901, 944, 962
BcuI ACTAGT 1 cut(s) 641
BfaI CTAG 2 cut(s) 27, 642
BfoI RGCGCY 2 cut(s) 311, 453
BisI GCNGC 4 cut(s) 282, 330, 351, 830
BlsI GCNGC 4 cut(s) 283, 331, 352, 831
Bme1390I CCNGG 3 cut(s) 326, 392, 672
Bme18I GGWCC 1 cut(s) 30
BmgT120I GGNCC 3 cut(s) 30, 348, 389
BmiI GGNNCC 4 cut(s) 309, 609, 649, 681
BmrFI CCNGG 3 cut(s) 326, 392, 672
BmsI GCATC 2 cut(s) 325, 547
BpiI GAAGAC 1 cut(s) 402
BpmI CTGGAG 1 cut(s) 39
BpuEI CTTGAG 1 cut(s) 866
BpuMI CCSGG 3 cut(s) 326, 392, 672
BsaHI GRCGYC 1 cut(s) 308
BsaI GGTCTC 1 cut(s) 962
BsaJI CCNNGG 2 cut(s) 75, 267
BsaWI WCCGGW 3 cut(s) 46, 408, 440
Bsc4I CCNNNNNNNGG 3 cut(s) 39, 689, 921
Bse118I RCCGGY 3 cut(s) 32, 46, 408
Bse1I ACTGG 1 cut(s) 404
BseDI CCNNGG 2 cut(s) 75, 267
BseGI GGATG 4 cut(s) 316, 538, 742, 794
BseLI CCNNNNNNNGG 3 cut(s) 39, 689, 921
BseMII CTCAG 1 cut(s) 486
BseNI ACTGG 1 cut(s) 404
BsePI GCGCGC 1 cut(s) 36
BseRI GAGGAG 2 cut(s) 168, 839
BseXI GCAGC 3 cut(s) 293, 316, 841
BseYI CCCAGC 1 cut(s) 452
Bsh1236I CGCG 2 cut(s) 38, 40
BshFI GGCC 4 cut(s) 272, 350, 390, 587
BshNI GGYRCC 2 cut(s) 307, 607
BshTI ACCGGT 2 cut(s) 46, 408
BsiSI CCGG 9 cut(s) 33, 47, 311, 326, 381, 392, 409, 441, 671
BslFI GGGAC 1 cut(s) 355
BslI CCNNNNNNNGG 3 cut(s) 39, 689, 921
BsmAI GTCTC 5 cut(s) 17, 268, 901, 944, 962
BsmFI GGGAC 1 cut(s) 355
BsnI GGCC 4 cut(s) 272, 350, 390, 587
Bso31I GGTCTC 1 cut(s) 962
Bsp1286I GDGCHC 1 cut(s) 744
Bsp143I GATC 3 cut(s) 647, 679, 888
BspANI GGCC 4 cut(s) 272, 350, 390, 587
BspCNI CTCAG 1 cut(s) 487
BspFNI CGCG 2 cut(s) 38, 40
BspLI GGNNCC 4 cut(s) 309, 609, 649, 681
BspPI GGATC 4 cut(s) 642, 655, 674, 687
BspT107I GGYRCC 2 cut(s) 307, 607
BspTNI GGTCTC 1 cut(s) 962
BsrBI CCGCTC 1 cut(s) 15
BsrFI RCCGGY 3 cut(s) 32, 46, 408
BsrI ACTGG 1 cut(s) 404
BssAI RCCGGY 3 cut(s) 32, 46, 408
BssECI CCNNGG 2 cut(s) 75, 267
BssHII GCGCGC 1 cut(s) 36
BssMI GATC 3 cut(s) 647, 679, 888
BssNI GRCGYC 1 cut(s) 308
Bst4CI ACNGT 1 cut(s) 767
Bst6I CTCTTC 2 cut(s) 186, 776
BstACI GRCGYC 1 cut(s) 308
BstC8I GCNNGC 4 cut(s) 38, 306, 612, 919
BstDEI CTNAG 3 cut(s) 495, 596, 903
BstEII GGTNACC 1 cut(s) 42
BstF5I GGATG 4 cut(s) 316, 538, 742, 794
BstFNI CGCG 2 cut(s) 38, 40
BstH2I RGCGCY 2 cut(s) 311, 453
BstHHI GCGC 4 cut(s) 38, 40, 310, 452
BstKTI GATC 3 cut(s) 650, 682, 891
BstMAI GTCTC 5 cut(s) 17, 268, 901, 944, 962
BstMBI GATC 3 cut(s) 647, 679, 888
BstMWI GCNNNNNNNGC 2 cut(s) 278, 464
BstNSI RCATGY 1 cut(s) 836
BstPI GGTNACC 1 cut(s) 42
BstSCI CCNGG 3 cut(s) 324, 390, 670
BstUI CGCG 2 cut(s) 38, 40
BstV1I GCAGC 3 cut(s) 293, 316, 841
BstV2I GAAGAC 1 cut(s) 402
BstX2I RGATCY 2 cut(s) 647, 679
BstXI CCANNNNNNTGG 1 cut(s) 549
BstYI RGATCY 2 cut(s) 647, 679
BsuRI GGCC 4 cut(s) 272, 350, 390, 587
BtsCI GGATG 4 cut(s) 316, 538, 742, 794
BtsIMutI CAGTG 1 cut(s) 772
Cac8I GCNNGC 4 cut(s) 38, 306, 612, 919
CfoI GCGC 4 cut(s) 38, 40, 310, 452
Cfr10I RCCGGY 3 cut(s) 32, 46, 408
Cfr13I GGNCC 3 cut(s) 30, 348, 389
CspAI ACCGGT 2 cut(s) 46, 408
CviAII CATG 3 cut(s) 475, 833, 877
DdeI CTNAG 3 cut(s) 495, 596, 903
DinI GGCGCC 1 cut(s) 309
DpnI GATC 3 cut(s) 649, 681, 890
DpnII GATC 3 cut(s) 647, 679, 888
EaeI YGGCCR 1 cut(s) 585
Eam1104I CTCTTC 2 cut(s) 186, 776
EarI CTCTTC 2 cut(s) 186, 776
EciI GGCGGA 1 cut(s) 904
Eco24I GRGCYC 1 cut(s) 744
Eco31I GGTCTC 1 cut(s) 962
Eco47I GGWCC 1 cut(s) 30
Eco47III AGCGCT 1 cut(s) 451
Eco91I GGTNACC 1 cut(s) 42
EcoO65I GGTNACC 1 cut(s) 42
EcoT38I GRGCYC 1 cut(s) 744
EgeI GGCGCC 1 cut(s) 309
EheI GGCGCC 1 cut(s) 309
FaeI CATG 3 cut(s) 478, 836, 880
FaiI YATR 9 cut(s) 300, 336, 414, 464, 476, 544, 834, 878, 893
FalI AAGNNNNNCTT 2 cut(s) 165, 197
FaqI GGGAC 1 cut(s) 355
FatI CATG 3 cut(s) 474, 832, 876
FauI CCCGC 1 cut(s) 914
Fnu4HI GCNGC 4 cut(s) 282, 330, 351, 830
FokI GGATG 4 cut(s) 303, 525, 749, 801
FriOI GRGCYC 1 cut(s) 744
Fsp4HI GCNGC 4 cut(s) 282, 330, 351, 830
FspBI CTAG 2 cut(s) 27, 642
GlaI GCGC 4 cut(s) 37, 39, 309, 451
GluI GCNGC 4 cut(s) 282, 330, 351, 830
GsaI CCCAGC 1 cut(s) 456
GsuI CTGGAG 1 cut(s) 39
HaeII RGCGCY 2 cut(s) 311, 453
HaeIII GGCC 4 cut(s) 272, 350, 390, 587
HapII CCGG 9 cut(s) 33, 47, 311, 326, 381, 392, 409, 441, 671
HhaI GCGC 4 cut(s) 38, 40, 310, 452
Hin1I GRCGYC 1 cut(s) 308
Hin1II CATG 3 cut(s) 478, 836, 880
Hin6I GCGC 4 cut(s) 36, 38, 308, 450
HinP1I GCGC 4 cut(s) 36, 38, 308, 450
HincII GTYRAC 1 cut(s) 166
HindII GTYRAC 1 cut(s) 166
HinfI GANTC 5 cut(s) 153, 162, 341, 368, 592
HpaII CCGG 9 cut(s) 33, 47, 311, 326, 381, 392, 409, 441, 671
HphI GGTGA 4 cut(s) 36, 455, 461, 566
Hpy166II GTNNAC 2 cut(s) 166, 190
Hpy188I TCNGA 6 cut(s) 76, 268, 496, 652, 684, 814
Hpy188III TCNNGA 2 cut(s) 18, 883
Hpy8I GTNNAC 2 cut(s) 166, 190
Hpy99I CGWCG 1 cut(s) 93
HpyAV CCTTC 4 cut(s) 58, 645, 727, 814
HpyCH4III ACNGT 1 cut(s) 767
HpyCH4IV ACGT 1 cut(s) 88
HpyCH4V TGCA 5 cut(s) 120, 281, 416, 538, 909
HpyF10VI GCNNNNNNNGC 2 cut(s) 278, 464
HpyF3I CTNAG 3 cut(s) 495, 596, 903
HpySE526I ACGT 1 cut(s) 88
Hsp92I GRCGYC 1 cut(s) 308
Hsp92II CATG 3 cut(s) 478, 836, 880
HspAI GCGC 4 cut(s) 36, 38, 308, 450
KasI GGCGCC 1 cut(s) 307
Kzo9I GATC 3 cut(s) 647, 679, 888
LmnI GCTCC 4 cut(s) 77, 181, 313, 826
Lsp1109I GCAGC 3 cut(s) 293, 316, 841
LweI GCATC 2 cut(s) 325, 547
MaeI CTAG 2 cut(s) 27, 642
MaeII ACGT 1 cut(s) 88
MaeIII GTNAC 3 cut(s) 42, 860, 871
MalI GATC 3 cut(s) 649, 681, 890
MbiI CCGCTC 1 cut(s) 15
MboI GATC 3 cut(s) 647, 679, 888
MboII GAAGA 9 cut(s) 173, 350, 407, 569, 584, 790, 793, 898, 931
MflI RGATCY 2 cut(s) 647, 679
MhlI GDGCHC 1 cut(s) 744
Mly113I GGCGCC 1 cut(s) 308
MlyI GAGTC 4 cut(s) 162, 171, 377, 601
MmeI TCCRAC 1 cut(s) 345
MnlI CCTC 9 cut(s) 70, 189, 260, 262, 330, 763, 799, 817, 943
MseI TTAA 2 cut(s) 513, 666
MslI CAYNNNNRTG 2 cut(s) 201, 358
MspA1I CMGCKG 2 cut(s) 284, 921
MspI CCGG 9 cut(s) 33, 47, 311, 326, 381, 392, 409, 441, 671
MspR9I CCNGG 3 cut(s) 326, 392, 672
MvnI CGCG 2 cut(s) 38, 40
MwoI GCNNNNNNNGC 2 cut(s) 278, 464
NarI GGCGCC 1 cut(s) 308
NciI CCSGG 3 cut(s) 326, 392, 672
NdeII GATC 3 cut(s) 647, 679, 888
NlaIII CATG 3 cut(s) 478, 836, 880
NlaIV GGNNCC 4 cut(s) 309, 609, 649, 681
NmeAIII GCCGAG 2 cut(s) 185, 613
NmuCI GTSAC 3 cut(s) 42, 860, 871
NspI RCATGY 1 cut(s) 836
OliI CACNNNNGTG 1 cut(s) 201
PauI GCGCGC 1 cut(s) 36
PfeI GAWTC 1 cut(s) 341
PinAI ACCGGT 2 cut(s) 46, 408
PkrI GCNGC 4 cut(s) 283, 331, 352, 831
PleI GAGTC 4 cut(s) 161, 170, 376, 600
PluTI GGCGCC 1 cut(s) 311
PpsI GAGTC 4 cut(s) 161, 170, 376, 600
PspEI GGTNACC 1 cut(s) 42
PspFI CCCAGC 1 cut(s) 452
PspN4I GGNNCC 4 cut(s) 309, 609, 649, 681
PspPI GGNCC 3 cut(s) 30, 348, 389
PsuI RGATCY 2 cut(s) 647, 679
PteI GCGCGC 1 cut(s) 36
PvuII CAGCTG 1 cut(s) 284
RseI CAYNNNNRTG 2 cut(s) 201, 358
SaqAI TTAA 2 cut(s) 513, 666
SatI GCNGC 4 cut(s) 282, 330, 351, 830
Sau3AI GATC 3 cut(s) 647, 679, 888
Sau96I GGNCC 3 cut(s) 30, 348, 389
SchI GAGTC 4 cut(s) 162, 171, 377, 601
ScrFI CCNGG 3 cut(s) 326, 392, 672
SduI GDGCHC 1 cut(s) 744
SfaNI GCATC 2 cut(s) 325, 547
SfoI GGCGCC 1 cut(s) 309
SinI GGWCC 1 cut(s) 30
SmiMI CAYNNNNRTG 2 cut(s) 201, 358
SmlI CTYRAG 1 cut(s) 881
SmoI CTYRAG 1 cut(s) 881
SpeI ACTAGT 1 cut(s) 641
SspDI GGCGCC 1 cut(s) 307
SspMI CTAG 2 cut(s) 27, 642
StyD4I CCNGG 3 cut(s) 324, 390, 670
TaaI ACNGT 1 cut(s) 767
TaiI ACGT 1 cut(s) 91
TaqI TCGA 1 cut(s) 638
TauI GCSGC 1 cut(s) 353
TfiI GAWTC 1 cut(s) 341
Tru1I TTAA 2 cut(s) 513, 666
Tru9I TTAA 2 cut(s) 513, 666
TscAI CASTG 1 cut(s) 772
TseFI GTSAC 3 cut(s) 42, 860, 871
TseI GCWGC 3 cut(s) 281, 329, 829
Tsp45I GTSAC 3 cut(s) 42, 860, 871
TspDTI ATGAA 1 cut(s) 351
TspRI CASTG 1 cut(s) 772
VpaK11BI GGWCC 1 cut(s) 30
XceI RCATGY 1 cut(s) 836
XspI CTAG 2 cut(s) 27, 642
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.