Rroxscaffold_178G00437230

Carboxylesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000178
OG0000397
Physical Location & Seq
Forward (+)
43782 .. 44735
954 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_178G00437230.1

Sequence Viewer

Length: 915 bp
ATGAGCGACGAACTAGCCCATGATTTCTCTCCCATGATCAAAGTATACAAAGACGGTCGAATCGACCGACCCTGGGGAACAACCACAGTCCCTGCATCCATCGATCCCCAAACCGGTGTTCAATCCAAAGACGTCGTCATCTCAACCGCACCACCCATCTCTGTAAGGCTTTACATTCCCAAATCCAACACAACCGAGTCAGCCGAGTCAACTCGGAAGCTCCCTCTTCTGGTTTACTTTCACGGCGGTGCCTTCTGCATTGGAAGTGCTTTCTCTCGCATATGTCACAACCACTGCAACTCTTTAGTCTCTGAAGCCAATGTTGTAGCTGTTTCTGTTGACTATAGGTTGGTGCCGGAGCACCCTCTTCCGGCTGCCTATGAAGATTCATGGGCCGCTCTCAAATGGGTGGAGTCCCATTTCGCCGGAACCGGCCCGGAAGAGTGGCTGAACCGGCGTGCAGATTTGAACCGGGTTTTCTTTTCAGGTGATAGCGCTGGGGCAAACATAGCTCACCACATGGGTTTGAGAGTTGGGTCTGAGAAGTTGGTGTATTTTAAGCTGAATGGGATTGTTCTGGTGCATCCATACTTTTGGGGTGAAGAACCAGTAGGCGGAGAGGTAGCTTTGGGCGAGAGTCATAGAGAGCATTTGGCTGCTTTGTGGAGGTTTGCTTACCCTTTGACTAGTGGATCTGATGACCCCCTTTTTAATCCGGTGTTGGTCTGTGTTGCGGAGAAGGATGCGTTGAAAGATAGGGGGTGGTATTACAGTGAGGTGTTGAAGAAGAGTGGATGGAATGGAGTAGTAGAGGTTTTGGAAACAAAGGAGGAGCAGCATGTGTTCCATTTGATCAATCCTAGTTGTGACAATGCTGTGACCATGCTCAAGAAGATTGTTTCTTTCATGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

304

Amino Acids

33.77

Weight (kDa)

5.89

Isoelectric Point (pI)

30.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COesterase PF00135 57 - 180 1.8e-09 Carboxylesterase family
BD-FAE PF20434 68 - 181 2.1e-12 BD-FAE
Abhydrolase_3 PF07859 77 - 283 1.1e-48 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000397)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48690 AT3G48700
fragaria_vesca FvH4_2g06400 FvH4_2g06430 FvH4_2g06450 FvH4_2g06480 FvH4_2g06560
malus_domestica MD05G1076400.v1.1 MD05G1076500.v1.1 MD05G1078900.v1.1 MD05G1191000.v1.1 MD05G1191100.v1.1 MD08G1226300.v1.1 MD10G1091000.v1.1 MD10G1091200.v1.1 MD10G1091400.v1.1 MD10G1091600.v1.1 MD10G1091900.v1.1
prunus_persica Prupe.8G120800_v2.0.a1 Prupe.8G121100_v2.0.a1 Prupe.8G121200_v2.0.a1 Prupe.8G121300_v2.0.a1 Prupe.8G121400_v2.0.a1 Prupe.8G121500_v2.0.a1 Prupe.8G121600_v2.0.a1 Prupe.8G121700_v2.0.a1 Prupe.8G121900_v2.0.a1 Prupe.8G122000_v2.0.a1 Prupe.I000800_v2.0.a1
pyrus_communis pycom05g07040 pycom05g17560 pycom05g17680 pycom05g17760 pycom10g07450 pycom10g07470 pycom10g07550
rosa_chinensis RchiOBHm_Chr6g0258271 RchiOBHm_Chr6g0258281 RchiOBHm_Chr6g0258291 RchiOBHm_Chr6g0258311 RchiOBHm_Chr6g0258321 RchiOBHm_Chr6g0258501
rosa_laevigata RLG00000014606 RLG00000014621 RLG00000014622 RLG00000014624 RLG00000014625 RLG00000014627 RLG00000014629 RLG00000014633 RLG00000014635
rosa_multiflora Rmu_co8014592.1_g000001 Rmu_co8366243.1_g000001 Rmu_sc0001663.1_g000004 Rmu_sc0005877.1_g000001 Rmu_sc0005877.1_g000006 Rmu_sc0005877.1_g000007 Rmu_sc0007367.1_g000009 Rmu_sc0007367.1_g000019 Rmu_sc0010616.1_g000022 Rmu_sc0010616.1_g000023 Rmu_ssc0000213.1_g000009
rosa_roxburghii Rroxscaffold_178G00437230 Rroxscaffold_178G00437250 Rroxscaffold_178G00437280 Rroxscaffold_178G00437320 Rroxscaffold_178G00437340 Rroxscaffold_178G00437350 Rroxscaffold_178G00437480 Rroxscaffold_7G00205390 Rroxscaffold_7G00205410 Rroxscaffold_7G00205450 Rroxscaffold_7G00205490 Rroxscaffold_7G00205510 Rroxscaffold_7G00205520 Rroxscaffold_7G00205670 Rroxscaffold_7G00205730
rosa_rugosa Rorug05G0579800 Rorug05G0580500 Rorug05G0580600 Rorug05G0580700 Rorug05G0580900 Rorug05G0581000 Rorug05G0581900
rosa_samantha Rh6CG084800 Rh6CG085100 Rh6CG085200 Rh6CG085400 Rh6CG085500 Rh6CG085600 Rh6CG085700 Rh6CG086900
rosa_wichuraiana Rw6G008300 Rw6G008310 Rw6G008360 Rw6G008370 Rw6G008380 Rw6G008390 Rw6G008430 Rw6G008440 Rw6G008530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 135
AccB1I GGYRCC 2 cut(s) 248, 352
AccBSI CCGCTC 1 cut(s) 398
AccI GTMKAC 1 cut(s) 45
AciI CCGC 5 cut(s) 147, 246, 396, 615, 734
AclWI GGATC 2 cut(s) 98, 700
AcuI CTGAAG 1 cut(s) 333
AcyI GRCGYC 1 cut(s) 132
AfeI AGCGCT 1 cut(s) 496
AfiI CCNNNNNNNGG 5 cut(s) 73, 113, 229, 370, 614
AgeI ACCGGT 1 cut(s) 113
AgsI TTSAA 4 cut(s) 122, 469, 751, 784
AhlI ACTAGT 1 cut(s) 686
AjnI CCWGG 1 cut(s) 71
AjuI GAANNNNNNNTTGG 2 cut(s) 102, 134
AleI CACNNNNGTG 1 cut(s) 246
AluBI AGCT 5 cut(s) 220, 329, 512, 562, 626
AluI AGCT 5 cut(s) 220, 329, 512, 562, 626
Alw21I GWGCWC 1 cut(s) 363
Alw26I GTCTC 1 cut(s) 313
AlwI GGATC 2 cut(s) 98, 700
AlwNI CAGNNNCTG 1 cut(s) 92
Aor51HI AGCGCT 1 cut(s) 496
AoxI GGCC 2 cut(s) 393, 433
ApeKI GCWGC 3 cut(s) 374, 656, 835
ArsI GACNNNNNNTTYG 2 cut(s) 120, 152
AsiGI ACCGGT 1 cut(s) 113
AspLEI GCGC 1 cut(s) 497
AspS9I GGNCC 2 cut(s) 393, 434
AsuC2I CCSGG 2 cut(s) 437, 473
AsuHPI GGTGA 3 cut(s) 500, 506, 611
BanI GGYRCC 2 cut(s) 248, 352
Bbv12I GWGCWC 1 cut(s) 363
BbvI GCAGC 3 cut(s) 361, 643, 847
BccI CCATC 3 cut(s) 107, 164, 789
BceAI ACGGC 1 cut(s) 259
BciT130I CCWGG 1 cut(s) 73
BclI TGATCA 2 cut(s) 36, 852
BcnI CCSGG 2 cut(s) 437, 473
BcoDI GTCTC 1 cut(s) 313
BcuI ACTAGT 1 cut(s) 686
BfaI CTAG 3 cut(s) 14, 687, 861
BfmI CTRYAG 1 cut(s) 343
BfoI RGCGCY 1 cut(s) 498
BisI GCNGC 4 cut(s) 375, 396, 657, 836
BlsI GCNGC 4 cut(s) 376, 397, 658, 837
Bme1390I CCNGG 3 cut(s) 73, 437, 473
BmgT120I GGNCC 2 cut(s) 393, 434
BmiI GGNNCC 3 cut(s) 250, 354, 430
BmrFI CCNGG 3 cut(s) 73, 437, 473
BmsI GCATC 3 cut(s) 104, 592, 733
BpuEI CTTGAG 1 cut(s) 872
BpuMI CCSGG 2 cut(s) 437, 473
Bsa29I ATCGAT 1 cut(s) 102
BsaHI GRCGYC 1 cut(s) 132
BsaJI CCNNGG 2 cut(s) 71, 72
BsaWI WCCGGW 2 cut(s) 113, 715
Bsc4I CCNNNNNNNGG 5 cut(s) 73, 113, 229, 370, 614
Bse118I RCCGGY 3 cut(s) 113, 431, 453
Bse1I ACTGG 1 cut(s) 608
BseBI CCWGG 1 cut(s) 73
BseCI ATCGAT 1 cut(s) 102
BseDI CCNNGG 2 cut(s) 71, 72
BseGI GGATG 4 cut(s) 95, 583, 748, 800
BseLI CCNNNNNNNGG 5 cut(s) 73, 113, 229, 370, 614
BseMII CTCAG 1 cut(s) 531
BseNI ACTGG 1 cut(s) 608
BseRI GAGGAG 1 cut(s) 845
BseXI GCAGC 3 cut(s) 361, 643, 847
BseYI CCCAGC 1 cut(s) 497
BsgI GTGCAG 1 cut(s) 480
Bsh1285I CGRYCG 2 cut(s) 58, 67
BshFI GGCC 2 cut(s) 395, 435
BshNI GGYRCC 2 cut(s) 248, 352
BshTI ACCGGT 1 cut(s) 113
BshVI ATCGAT 1 cut(s) 102
BsiEI CGRYCG 2 cut(s) 58, 67
BsiHKAI GWGCWC 1 cut(s) 363
BsiSI CCGG 9 cut(s) 114, 356, 371, 426, 432, 437, 454, 472, 716
BslFI GGGAC 2 cut(s) 74, 400
BslI CCNNNNNNNGG 5 cut(s) 73, 113, 229, 370, 614
BsmAI GTCTC 1 cut(s) 313
BsmFI GGGAC 2 cut(s) 74, 400
BsnI GGCC 2 cut(s) 395, 435
Bsp1286I GDGCHC 1 cut(s) 363
Bsp143I GATC 4 cut(s) 36, 103, 692, 852
BspACI CCGC 5 cut(s) 147, 246, 396, 615, 734
BspANI GGCC 2 cut(s) 395, 435
BspCNI CTCAG 1 cut(s) 532
BspDI ATCGAT 1 cut(s) 102
BspHI TCATGA 1 cut(s) 906
BspLI GGNNCC 3 cut(s) 250, 354, 430
BspPI GGATC 2 cut(s) 98, 700
BspT107I GGYRCC 2 cut(s) 248, 352
BsrBI CCGCTC 1 cut(s) 398
BsrFI RCCGGY 3 cut(s) 113, 431, 453
BsrI ACTGG 1 cut(s) 608
BssAI RCCGGY 3 cut(s) 113, 431, 453
BssECI CCNNGG 2 cut(s) 71, 72
BssMI GATC 4 cut(s) 36, 103, 692, 852
BssNAI GTATAC 1 cut(s) 46
BssNI GRCGYC 1 cut(s) 132
Bst1107I GTATAC 1 cut(s) 46
Bst2UI CCWGG 1 cut(s) 73
Bst4CI ACNGT 3 cut(s) 56, 88, 773
Bst6I CTCTTC 4 cut(s) 231, 372, 435, 782
BstACI GRCGYC 1 cut(s) 132
BstC8I GCNNGC 1 cut(s) 459
BstDEI CTNAG 1 cut(s) 540
BstF5I GGATG 4 cut(s) 95, 583, 748, 800
BstH2I RGCGCY 1 cut(s) 498
BstHHI GCGC 1 cut(s) 497
BstKTI GATC 4 cut(s) 39, 106, 695, 855
BstMAI GTCTC 1 cut(s) 313
BstMBI GATC 4 cut(s) 36, 103, 692, 852
BstMCI CGRYCG 2 cut(s) 58, 67
BstMWI GCNNNNNNNGC 2 cut(s) 454, 509
BstNI CCWGG 1 cut(s) 73
BstNSI RCATGY 1 cut(s) 842
BstSCI CCNGG 3 cut(s) 71, 435, 471
BstSFI CTRYAG 1 cut(s) 343
BstV1I GCAGC 3 cut(s) 361, 643, 847
BstX2I RGATCY 1 cut(s) 692
BstXI CCANNNNNNTGG 1 cut(s) 594
BstYI RGATCY 1 cut(s) 692
BstZ17I GTATAC 1 cut(s) 46
Bsu15I ATCGAT 1 cut(s) 102
BsuRI GGCC 2 cut(s) 395, 435
BsuTUI ATCGAT 1 cut(s) 102
BtsCI GGATG 4 cut(s) 95, 583, 748, 800
BtsI GCAGTG 1 cut(s) 292
BtsIMutI CAGTG 2 cut(s) 292, 778
Cac8I GCNNGC 1 cut(s) 459
CaiI CAGNNNCTG 1 cut(s) 92
CciI TCATGA 1 cut(s) 906
CfoI GCGC 1 cut(s) 497
Cfr10I RCCGGY 3 cut(s) 113, 431, 453
Cfr13I GGNCC 2 cut(s) 393, 434
ClaI ATCGAT 1 cut(s) 102
CspAI ACCGGT 1 cut(s) 113
CviAII CATG 7 cut(s) 20, 34, 390, 520, 839, 883, 907
DdeI CTNAG 1 cut(s) 540
DpnI GATC 4 cut(s) 38, 105, 694, 854
DpnII GATC 4 cut(s) 36, 103, 692, 852
Eam1104I CTCTTC 4 cut(s) 231, 372, 435, 782
EarI CTCTTC 4 cut(s) 231, 372, 435, 782
EciI GGCGGA 1 cut(s) 630
Eco47III AGCGCT 1 cut(s) 496
Eco57I CTGAAG 1 cut(s) 333
EcoRII CCWGG 1 cut(s) 71
FaeI CATG 7 cut(s) 23, 37, 393, 523, 842, 886, 910
FaqI GGGAC 2 cut(s) 74, 400
FatI CATG 7 cut(s) 19, 33, 389, 519, 838, 882, 906
FauNDI CATATG 1 cut(s) 281
FbaI TGATCA 2 cut(s) 36, 852
FblI GTMKAC 1 cut(s) 45
Fnu4HI GCNGC 4 cut(s) 375, 396, 657, 836
FokI GGATG 4 cut(s) 82, 570, 755, 807
Fsp4HI GCNGC 4 cut(s) 375, 396, 657, 836
FspBI CTAG 3 cut(s) 14, 687, 861
GlaI GCGC 1 cut(s) 496
GluI GCNGC 4 cut(s) 375, 396, 657, 836
GsaI CCCAGC 1 cut(s) 501
HaeII RGCGCY 1 cut(s) 498
HaeIII GGCC 2 cut(s) 395, 435
HapII CCGG 9 cut(s) 114, 356, 371, 426, 432, 437, 454, 472, 716
HhaI GCGC 1 cut(s) 497
Hin1I GRCGYC 1 cut(s) 132
Hin1II CATG 7 cut(s) 23, 37, 393, 523, 842, 886, 910
Hin6I GCGC 1 cut(s) 495
HinP1I GCGC 1 cut(s) 495
HincII GTYRAC 2 cut(s) 210, 340
HindII GTYRAC 2 cut(s) 210, 340
HinfI GANTC 6 cut(s) 60, 197, 206, 386, 413, 637
HpaII CCGG 9 cut(s) 114, 356, 371, 426, 432, 437, 454, 472, 716
HphI GGTGA 3 cut(s) 500, 506, 611
Hpy166II GTNNAC 4 cut(s) 46, 210, 235, 340
Hpy188I TCNGA 4 cut(s) 216, 313, 541, 697
Hpy188III TCNNGA 2 cut(s) 889, 907
Hpy8I GTNNAC 4 cut(s) 46, 210, 235, 340
Hpy99I CGWCG 2 cut(s) 11, 137
HpyAV CCTTC 2 cut(s) 262, 733
HpyCH4III ACNGT 3 cut(s) 56, 88, 773
HpyCH4IV ACGT 1 cut(s) 132
HpyCH4V TGCA 5 cut(s) 95, 258, 297, 461, 583
HpyF10VI GCNNNNNNNGC 2 cut(s) 454, 509
HpyF3I CTNAG 1 cut(s) 540
HpySE526I ACGT 1 cut(s) 132
Hsp92I GRCGYC 1 cut(s) 132
Hsp92II CATG 7 cut(s) 23, 37, 393, 523, 842, 886, 910
HspAI GCGC 1 cut(s) 495
Ksp22I TGATCA 2 cut(s) 36, 852
Kzo9I GATC 4 cut(s) 36, 103, 692, 852
LmnI GCTCC 3 cut(s) 225, 358, 832
Lsp1109I GCAGC 3 cut(s) 361, 643, 847
LweI GCATC 3 cut(s) 104, 592, 733
MaeI CTAG 3 cut(s) 14, 687, 861
MaeII ACGT 1 cut(s) 132
MaeIII GTNAC 3 cut(s) 284, 866, 877
MalI GATC 4 cut(s) 38, 105, 694, 854
MbiI CCGCTC 1 cut(s) 398
MboI GATC 4 cut(s) 36, 103, 692, 852
MboII GAAGA 8 cut(s) 218, 359, 395, 452, 614, 796, 799, 904
MflI RGATCY 1 cut(s) 692
MhlI GDGCHC 1 cut(s) 363
MluCI AATT 1 cut(s) 910
MlyI GAGTC 4 cut(s) 206, 215, 422, 646
MmeI TCCRAC 1 cut(s) 210
MnlI CCTC 7 cut(s) 234, 375, 613, 660, 769, 805, 823
MseI TTAA 2 cut(s) 558, 711
MslI CAYNNNNRTG 1 cut(s) 246
MspI CCGG 9 cut(s) 114, 356, 371, 426, 432, 437, 454, 472, 716
MspR9I CCNGG 3 cut(s) 73, 437, 473
MvaI CCWGG 1 cut(s) 73
MwoI GCNNNNNNNGC 2 cut(s) 454, 509
NciI CCSGG 2 cut(s) 437, 473
NdeI CATATG 1 cut(s) 281
NdeII GATC 4 cut(s) 36, 103, 692, 852
NlaIII CATG 7 cut(s) 23, 37, 393, 523, 842, 886, 910
NlaIV GGNNCC 3 cut(s) 250, 354, 430
NmeAIII GCCGAG 1 cut(s) 229
NmuCI GTSAC 3 cut(s) 284, 866, 877
NspI RCATGY 1 cut(s) 842
OliI CACNNNNGTG 1 cut(s) 246
PagI TCATGA 1 cut(s) 906
PasI CCCWGGG 1 cut(s) 72
PcsI WCGNNNNNNNCGW 2 cut(s) 60, 64
PfeI GAWTC 2 cut(s) 60, 386
PflFI GACNNNGTC 1 cut(s) 134
PinAI ACCGGT 1 cut(s) 113
PkrI GCNGC 4 cut(s) 376, 397, 658, 837
PleI GAGTC 4 cut(s) 205, 214, 421, 645
PpsI GAGTC 4 cut(s) 205, 214, 421, 645
Psp6I CCWGG 1 cut(s) 71
PspFI CCCAGC 1 cut(s) 497
PspGI CCWGG 1 cut(s) 71
PspN4I GGNNCC 3 cut(s) 250, 354, 430
PspPI GGNCC 2 cut(s) 393, 434
PstNI CAGNNNCTG 1 cut(s) 92
PsuI RGATCY 1 cut(s) 692
PsyI GACNNNGTC 1 cut(s) 134
RseI CAYNNNNRTG 1 cut(s) 246
SaqAI TTAA 2 cut(s) 558, 711
SatI GCNGC 4 cut(s) 375, 396, 657, 836
Sau3AI GATC 4 cut(s) 36, 103, 692, 852
Sau96I GGNCC 2 cut(s) 393, 434
SchI GAGTC 4 cut(s) 206, 215, 422, 646
ScrFI CCNGG 3 cut(s) 73, 437, 473
SduI GDGCHC 1 cut(s) 363
SfaNI GCATC 3 cut(s) 104, 592, 733
SfcI CTRYAG 1 cut(s) 343
SmiMI CAYNNNNRTG 1 cut(s) 246
SmlI CTYRAG 1 cut(s) 887
SmoI CTYRAG 1 cut(s) 887
SpeI ACTAGT 1 cut(s) 686
Sse9I AATT 1 cut(s) 910
SsiI CCGC 5 cut(s) 147, 246, 396, 615, 734
SspMI CTAG 3 cut(s) 14, 687, 861
StyD4I CCNGG 3 cut(s) 71, 435, 471
TaaI ACNGT 3 cut(s) 56, 88, 773
TaiI ACGT 1 cut(s) 135
TaqI TCGA 3 cut(s) 58, 63, 102
TaqII GACCGA 1 cut(s) 81
TasI AATT 1 cut(s) 910
TauI GCSGC 1 cut(s) 398
TfiI GAWTC 2 cut(s) 60, 386
Tru1I TTAA 2 cut(s) 558, 711
Tru9I TTAA 2 cut(s) 558, 711
TscAI CASTG 2 cut(s) 299, 778
TseFI GTSAC 3 cut(s) 284, 866, 877
TseI GCWGC 3 cut(s) 374, 656, 835
Tsp45I GTSAC 3 cut(s) 284, 866, 877
TspDTI ATGAA 3 cut(s) 378, 396, 895
TspRI CASTG 2 cut(s) 299, 778
Tth111I GACNNNGTC 1 cut(s) 134
XceI RCATGY 1 cut(s) 842
XmiI GTMKAC 1 cut(s) 45
XspI CTAG 3 cut(s) 14, 687, 861
ZraI GACGTC 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.