Rorug05G0579800

Carboxylesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000397
Physical Location & Seq
Forward (+)
77678311 .. 77678913
603 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0579800.1

Sequence Viewer

Length: 480 bp
ATGTACTCAAGTCCAAGTTCTCAGCTGTGCTCACACATTTGGACGCGCCAGTGTCAGTTTTTCACTGATCGATTATACAACTTCAACAACACAGGGAGTCCTGACCAAACCTTAAACTCGACCTACATAGAAACCTTGAGTGACATATGCCCACAAAATGGGAATGGGAGTGTCCTGGCCAATTTTGATCCCTCAACACCTGATGGTTTCGACAGCAACTATTTCTCTAACCTTCAAGTTCATAAGGGTCTACTCCAAAGCGATCAAGAGCAGTTTTCGACTAGCGGGGCTGATACCATTGACATAGTTAACAACTTCAGCGTTAATCAGACCACATTCTTTGAGAGCTTTGTGGAATCGATGATTAAAATGGGGAATATAAGCCTCTTGACAGGAACTGATGGAGAGATTCGATTGAACTGCAGTAGGGTTAACGAAGATTCATTTGGATCATCTGCTGCTTTGCTAGCTGAGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

159

Amino Acids

17.61

Weight (kDa)

4.12

Isoelectric Point (pI)

42.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 16 - 107 7.1e-16 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000397)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48690 AT3G48700
fragaria_vesca FvH4_2g06400 FvH4_2g06430 FvH4_2g06450 FvH4_2g06480 FvH4_2g06560
malus_domestica MD05G1076400.v1.1 MD05G1076500.v1.1 MD05G1078900.v1.1 MD05G1191000.v1.1 MD05G1191100.v1.1 MD08G1226300.v1.1 MD10G1091000.v1.1 MD10G1091200.v1.1 MD10G1091400.v1.1 MD10G1091600.v1.1 MD10G1091900.v1.1
prunus_persica Prupe.8G120800_v2.0.a1 Prupe.8G121100_v2.0.a1 Prupe.8G121200_v2.0.a1 Prupe.8G121300_v2.0.a1 Prupe.8G121400_v2.0.a1 Prupe.8G121500_v2.0.a1 Prupe.8G121600_v2.0.a1 Prupe.8G121700_v2.0.a1 Prupe.8G121900_v2.0.a1 Prupe.8G122000_v2.0.a1 Prupe.I000800_v2.0.a1
pyrus_communis pycom05g07040 pycom05g17560 pycom05g17680 pycom05g17760 pycom10g07450 pycom10g07470 pycom10g07550
rosa_chinensis RchiOBHm_Chr6g0258271 RchiOBHm_Chr6g0258281 RchiOBHm_Chr6g0258291 RchiOBHm_Chr6g0258311 RchiOBHm_Chr6g0258321 RchiOBHm_Chr6g0258501
rosa_laevigata RLG00000014606 RLG00000014621 RLG00000014622 RLG00000014624 RLG00000014625 RLG00000014627 RLG00000014629 RLG00000014633 RLG00000014635
rosa_multiflora Rmu_co8014592.1_g000001 Rmu_co8366243.1_g000001 Rmu_sc0001663.1_g000004 Rmu_sc0005877.1_g000001 Rmu_sc0005877.1_g000006 Rmu_sc0005877.1_g000007 Rmu_sc0007367.1_g000009 Rmu_sc0007367.1_g000019 Rmu_sc0010616.1_g000022 Rmu_sc0010616.1_g000023 Rmu_ssc0000213.1_g000009
rosa_roxburghii Rroxscaffold_178G00437230 Rroxscaffold_178G00437250 Rroxscaffold_178G00437280 Rroxscaffold_178G00437320 Rroxscaffold_178G00437340 Rroxscaffold_178G00437350 Rroxscaffold_178G00437480 Rroxscaffold_7G00205390 Rroxscaffold_7G00205410 Rroxscaffold_7G00205450 Rroxscaffold_7G00205490 Rroxscaffold_7G00205510 Rroxscaffold_7G00205520 Rroxscaffold_7G00205670 Rroxscaffold_7G00205730
rosa_rugosa Rorug05G0579800 Rorug05G0580500 Rorug05G0580600 Rorug05G0580700 Rorug05G0580900 Rorug05G0581000 Rorug05G0581900
rosa_samantha Rh6CG084800 Rh6CG085100 Rh6CG085200 Rh6CG085400 Rh6CG085500 Rh6CG085600 Rh6CG085700 Rh6CG086900
rosa_wichuraiana Rw6G008300 Rw6G008310 Rw6G008360 Rw6G008370 Rw6G008380 Rw6G008390 Rw6G008430 Rw6G008440 Rw6G008530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 158
AccI GTMKAC 1 cut(s) 250
AccII CGCG 1 cut(s) 46
AciI CCGC 1 cut(s) 285
AclWI GGATC 2 cut(s) 182, 457
AcoI YGGCCR 1 cut(s) 177
AcuI CTGAAG 1 cut(s) 301
AfaI GTAC 2 cut(s) 5, 476
AfiI CCNNNNNNNGG 1 cut(s) 158
AgsI TTSAA 3 cut(s) 85, 236, 418
AjnI CCWGG 1 cut(s) 174
AjuI GAANNNNNNNTTGG 2 cut(s) 429, 461
AluBI AGCT 3 cut(s) 25, 348, 470
AluI AGCT 3 cut(s) 25, 348, 470
Alw21I GWGCWC 1 cut(s) 32
AlwI GGATC 2 cut(s) 182, 457
AlwNI CAGNNNCTG 1 cut(s) 398
AoxI GGCC 1 cut(s) 177
ApeKI GCWGC 1 cut(s) 458
AspLEI GCGC 1 cut(s) 48
AsuNHI GCTAGC 1 cut(s) 466
BalI TGGCCA 1 cut(s) 179
Bbv12I GWGCWC 1 cut(s) 32
BbvI GCAGC 1 cut(s) 445
BccI CCATC 2 cut(s) 197, 395
BcgI CGANNNNNNTGC 2 cut(s) 402, 436
BciT130I CCWGG 1 cut(s) 176
BfaI CTAG 2 cut(s) 282, 467
BfmI CTRYAG 1 cut(s) 421
BisI GCNGC 1 cut(s) 459
BlsI GCNGC 1 cut(s) 460
BmcAI AGTACT 1 cut(s) 476
Bme1390I CCNGG 1 cut(s) 176
BmrFI CCNGG 1 cut(s) 176
BmtI GCTAGC 1 cut(s) 470
BpuEI CTTGAG 1 cut(s) 157
Bsa29I ATCGAT 2 cut(s) 70, 359
Bsc4I CCNNNNNNNGG 1 cut(s) 158
Bse1I ACTGG 1 cut(s) 49
BseBI CCWGG 1 cut(s) 176
BseCI ATCGAT 2 cut(s) 70, 359
BseLI CCNNNNNNNGG 1 cut(s) 158
BseMII CTCAG 2 cut(s) 35, 462
BseNI ACTGG 1 cut(s) 49
BseXI GCAGC 1 cut(s) 445
Bsh1236I CGCG 1 cut(s) 46
BshFI GGCC 1 cut(s) 179
BshVI ATCGAT 2 cut(s) 70, 359
BsiHKAI GWGCWC 1 cut(s) 32
BslI CCNNNNNNNGG 1 cut(s) 158
BsnI GGCC 1 cut(s) 179
Bsp1286I GDGCHC 1 cut(s) 32
Bsp143I GATC 4 cut(s) 67, 187, 262, 449
BspACI CCGC 1 cut(s) 285
BspANI GGCC 1 cut(s) 179
BspCNI CTCAG 2 cut(s) 34, 463
BspDI ATCGAT 2 cut(s) 70, 359
BspFNI CGCG 1 cut(s) 46
BspMAI CTGCAG 1 cut(s) 425
BspOI GCTAGC 1 cut(s) 470
BspPI GGATC 2 cut(s) 182, 457
BsrI ACTGG 1 cut(s) 49
BssMI GATC 4 cut(s) 67, 187, 262, 449
Bst2UI CCWGG 1 cut(s) 176
BstC8I GCNNGC 1 cut(s) 468
BstDEI CTNAG 2 cut(s) 21, 471
BstFNI CGCG 1 cut(s) 46
BstHHI GCGC 1 cut(s) 48
BstKTI GATC 4 cut(s) 70, 190, 265, 452
BstMBI GATC 4 cut(s) 67, 187, 262, 449
BstMWI GCNNNNNNNGC 1 cut(s) 467
BstNI CCWGG 1 cut(s) 176
BstSCI CCNGG 1 cut(s) 174
BstSFI CTRYAG 1 cut(s) 421
BstUI CGCG 1 cut(s) 46
BstV1I GCAGC 1 cut(s) 445
Bsu15I ATCGAT 2 cut(s) 70, 359
BsuRI GGCC 1 cut(s) 179
BsuTUI ATCGAT 2 cut(s) 70, 359
BtsIMutI CAGTG 2 cut(s) 56, 63
Cac8I GCNNGC 1 cut(s) 468
CaiI CAGNNNCTG 1 cut(s) 398
CfoI GCGC 1 cut(s) 48
ClaI ATCGAT 2 cut(s) 70, 359
CseI GACGC 1 cut(s) 52
Csp6I GTAC 2 cut(s) 4, 475
CspCI CAANNNNNGTGG 2 cut(s) 322, 357
CviJI RGCY 6 cut(s) 25, 179, 290, 348, 384, 470
CviKI_1 RGCY 6 cut(s) 25, 179, 290, 348, 384, 470
CviQI GTAC 2 cut(s) 4, 475
DdeI CTNAG 2 cut(s) 21, 471
DpnI GATC 4 cut(s) 69, 189, 264, 451
DpnII GATC 4 cut(s) 67, 187, 262, 449
EaeI YGGCCR 1 cut(s) 177
Eco57I CTGAAG 1 cut(s) 301
EcoRII CCWGG 1 cut(s) 174
FaiI YATR 7 cut(s) 76, 128, 146, 148, 243, 305, 380
FauI CCCGC 1 cut(s) 278
FauNDI CATATG 1 cut(s) 146
FblI GTMKAC 1 cut(s) 250
Fnu4HI GCNGC 1 cut(s) 459
Fsp4HI GCNGC 1 cut(s) 459
FspBI CTAG 2 cut(s) 282, 467
GlaI GCGC 1 cut(s) 47
GluI GCNGC 1 cut(s) 459
HaeIII GGCC 1 cut(s) 179
HgaI GACGC 1 cut(s) 52
HhaI GCGC 1 cut(s) 48
Hin6I GCGC 1 cut(s) 46
HinP1I GCGC 1 cut(s) 46
HincII GTYRAC 2 cut(s) 310, 433
HindII GTYRAC 2 cut(s) 310, 433
HinfI GANTC 4 cut(s) 97, 356, 409, 440
HpaI GTTAAC 2 cut(s) 310, 433
Hpy166II GTNNAC 3 cut(s) 251, 310, 433
Hpy188I TCNGA 1 cut(s) 330
Hpy188III TCNNGA 3 cut(s) 101, 266, 388
Hpy8I GTNNAC 3 cut(s) 251, 310, 433
HpyAV CCTTC 1 cut(s) 242
HpyCH4V TGCA 1 cut(s) 423
HpyF10VI GCNNNNNNNGC 1 cut(s) 467
HpyF3I CTNAG 2 cut(s) 21, 471
HspAI GCGC 1 cut(s) 46
KspAI GTTAAC 2 cut(s) 310, 433
Kzo9I GATC 4 cut(s) 67, 187, 262, 449
LpnPI CCDG 7 cut(s) 62, 78, 114, 161, 188, 213, 378
Lsp1109I GCAGC 1 cut(s) 445
MaeI CTAG 2 cut(s) 282, 467
MaeIII GTNAC 1 cut(s) 140
MalI GATC 4 cut(s) 69, 189, 264, 451
MboI GATC 4 cut(s) 67, 187, 262, 449
MboII GAAGA 1 cut(s) 449
MhlI GDGCHC 1 cut(s) 32
MlsI TGGCCA 1 cut(s) 179
MluCI AATT 1 cut(s) 181
MluNI TGGCCA 1 cut(s) 179
MlyI GAGTC 1 cut(s) 106
MnlI CCTC 2 cut(s) 202, 395
Mox20I TGGCCA 1 cut(s) 179
MscI TGGCCA 1 cut(s) 179
MseI TTAA 5 cut(s) 113, 309, 324, 366, 432
Msp20I TGGCCA 1 cut(s) 179
MspA1I CMGCKG 1 cut(s) 25
MspR9I CCNGG 1 cut(s) 176
MvaI CCWGG 1 cut(s) 176
MvnI CGCG 1 cut(s) 46
MwoI GCNNNNNNNGC 1 cut(s) 467
NdeI CATATG 1 cut(s) 146
NdeII GATC 4 cut(s) 67, 187, 262, 449
NheI GCTAGC 1 cut(s) 466
NmuCI GTSAC 1 cut(s) 140
PfeI GAWTC 3 cut(s) 356, 409, 440
PflMI CCANNNNNTGG 1 cut(s) 158
PkrI GCNGC 1 cut(s) 460
PleI GAGTC 1 cut(s) 105
PpsI GAGTC 1 cut(s) 105
Psp6I CCWGG 1 cut(s) 174
PspGI CCWGG 1 cut(s) 174
PstI CTGCAG 1 cut(s) 425
PstNI CAGNNNCTG 1 cut(s) 398
PvuII CAGCTG 1 cut(s) 25
RsaI GTAC 2 cut(s) 5, 476
RsaNI GTAC 2 cut(s) 4, 475
SaqAI TTAA 5 cut(s) 113, 309, 324, 366, 432
SatI GCNGC 1 cut(s) 459
Sau3AI GATC 4 cut(s) 67, 187, 262, 449
ScaI AGTACT 1 cut(s) 476
SchI GAGTC 1 cut(s) 106
ScrFI CCNGG 1 cut(s) 176
SduI GDGCHC 1 cut(s) 32
SetI ASST 8 cut(s) 27, 113, 125, 137, 202, 234, 350, 472
SfcI CTRYAG 1 cut(s) 421
SmlI CTYRAG 2 cut(s) 7, 136
SmoI CTYRAG 2 cut(s) 7, 136
Sse9I AATT 1 cut(s) 181
SsiI CCGC 1 cut(s) 285
SspMI CTAG 2 cut(s) 282, 467
StyD4I CCNGG 1 cut(s) 174
TaqI TCGA 6 cut(s) 70, 119, 210, 278, 359, 412
TasI AATT 1 cut(s) 181
TatI WGTACW 2 cut(s) 3, 474
TfiI GAWTC 3 cut(s) 356, 409, 440
Tru1I TTAA 5 cut(s) 113, 309, 324, 366, 432
Tru9I TTAA 5 cut(s) 113, 309, 324, 366, 432
TscAI CASTG 2 cut(s) 56, 70
TseFI GTSAC 1 cut(s) 140
TseI GCWGC 1 cut(s) 458
Tsp45I GTSAC 1 cut(s) 140
TspDTI ATGAA 2 cut(s) 230, 432
TspRI CASTG 2 cut(s) 56, 70
Van91I CCANNNNNTGG 1 cut(s) 158
XmiI GTMKAC 1 cut(s) 250
XspI CTAG 2 cut(s) 282, 467
ZrmI AGTACT 1 cut(s) 476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.