Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8014592.1

Orthogroup ID

OG0000397

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 535

Gene Structure 534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8014592.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ctcccctatctaccacacccacctcaactccctcactgccgaagcaaaagtcgtcgctttatccatccactaccgccgcgcaccggagcacccccttcccgccgcttttgaagattcctgggccgcatttgaatgggtcgccgcccattcgagtggcaacggtccggaagcctggctgaacgaacacgcggactttaaccgcgtgtttgtggccggagacagcgccggtgccactctggcgcaccacgtggtgcgtcacagtggagtggagggagttagtggggttaatattgcgggggttgttttgtttcatccgtattttcggaatgagaggccggataagttgttggaggtgatatatccgacgggcggcggatcggaggatctgaaagtgtacccgggaaaggatccgaaactggggagcttgggagctgggagagtgttggtgtttgtggcggagaaggattttctgaaggacaggggatggagttattatgaggcgttgaagaagagtgggtggggtggagtggtgga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0009056 GO:0016787 GO:0016788 GO:0044424 GO:0044444 GO:0044464 GO:0052689

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

177

Amino Acids

19.24

Weight (kDa)

6.34

Isoelectric Point (pI)

26.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000397)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48690 AT3G48700
fragaria_vesca	FvH4_2g06400 FvH4_2g06430 FvH4_2g06450 FvH4_2g06480 FvH4_2g06560
malus_domestica	MD05G1076400.v1.1 MD05G1076500.v1.1 MD05G1078900.v1.1 MD05G1191000.v1.1 MD05G1191100.v1.1 MD08G1226300.v1.1 MD10G1091000.v1.1 MD10G1091200.v1.1 MD10G1091400.v1.1 MD10G1091600.v1.1 MD10G1091900.v1.1
prunus_persica	Prupe.8G120800_v2.0.a1 Prupe.8G121100_v2.0.a1 Prupe.8G121200_v2.0.a1 Prupe.8G121300_v2.0.a1 Prupe.8G121400_v2.0.a1 Prupe.8G121500_v2.0.a1 Prupe.8G121600_v2.0.a1 Prupe.8G121700_v2.0.a1 Prupe.8G121900_v2.0.a1 Prupe.8G122000_v2.0.a1 Prupe.I000800_v2.0.a1
pyrus_communis	pycom05g07040 pycom05g17560 pycom05g17680 pycom05g17760 pycom10g07450 pycom10g07470 pycom10g07550
rosa_chinensis	RchiOBHm_Chr6g0258271 RchiOBHm_Chr6g0258281 RchiOBHm_Chr6g0258291 RchiOBHm_Chr6g0258311 RchiOBHm_Chr6g0258321 RchiOBHm_Chr6g0258501
rosa_laevigata	RLG00000014606 RLG00000014621 RLG00000014622 RLG00000014624 RLG00000014625 RLG00000014627 RLG00000014629 RLG00000014633 RLG00000014635
rosa_multiflora	Rmu_co8014592.1_g000001 Rmu_co8366243.1_g000001 Rmu_sc0001663.1_g000004 Rmu_sc0005877.1_g000001 Rmu_sc0005877.1_g000006 Rmu_sc0005877.1_g000007 Rmu_sc0007367.1_g000009 Rmu_sc0007367.1_g000019 Rmu_sc0010616.1_g000022 Rmu_sc0010616.1_g000023 Rmu_ssc0000213.1_g000009
rosa_roxburghii	Rroxscaffold_178G00437230 Rroxscaffold_178G00437250 Rroxscaffold_178G00437280 Rroxscaffold_178G00437320 Rroxscaffold_178G00437340 Rroxscaffold_178G00437350 Rroxscaffold_178G00437480 Rroxscaffold_7G00205390 Rroxscaffold_7G00205410 Rroxscaffold_7G00205450 Rroxscaffold_7G00205490 Rroxscaffold_7G00205510 Rroxscaffold_7G00205520 Rroxscaffold_7G00205670 Rroxscaffold_7G00205730
rosa_rugosa	Rorug05G0579800 Rorug05G0580500 Rorug05G0580600 Rorug05G0580700 Rorug05G0580900 Rorug05G0581000 Rorug05G0581900
rosa_samantha	Rh6CG084800 Rh6CG085100 Rh6CG085200 Rh6CG085400 Rh6CG085500 Rh6CG085600 Rh6CG085700 Rh6CG086900
rosa_wichuraiana	Rw6G008300 Rw6G008310 Rw6G008360 Rw6G008370 Rw6G008380 Rw6G008390 Rw6G008430 Rw6G008440 Rw6G008530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	228
AccII	CGCG	3 cut(s)	79, 189, 202
AccIII	TCCGGA	1 cut(s)	164
AclWI	GGATC	4 cut(s)	383, 391, 402, 415
AcoI	YGGCCR	1 cut(s)	211
AcuI	CTGAAG	1 cut(s)	492
AcvI	CACGTG	1 cut(s)	248
AdeI	CACNNNGTG	2 cut(s)	248, 251
AfaI	GTAC	1 cut(s)	396
AfiI	CCNNNNNNNGG	4 cut(s)	83, 369, 404, 417
AgsI	TTSAA	3 cut(s)	111, 132, 506
AjnI	CCWGG	2 cut(s)	117, 171
AluBI	AGCT	2 cut(s)	424, 432
AluI	AGCT	2 cut(s)	424, 432
Alw21I	GWGCWC	1 cut(s)	91
Alw26I	GTCTC	1 cut(s)	211
AlwI	GGATC	4 cut(s)	383, 391, 402, 415
Ama87I	CYCGRG	1 cut(s)	398
Aor13HI	TCCGGA	1 cut(s)	164
AoxI	GGCC	3 cut(s)	121, 211, 333
ArsI	GACNNNNNNTTYG	2 cut(s)	34, 66
AspLEI	GCGC	3 cut(s)	81, 225, 242
AspS9I	GGNCC	2 cut(s)	121, 162
AsuC2I	CCSGG	2 cut(s)	399, 400
AsuHPI	GGTGA	1 cut(s)	365
AvaI	CYCGRG	1 cut(s)	398
AvaII	GGWCC	1 cut(s)	162
BamHI	GGATCC	1 cut(s)	407
BanI	GGYRCC	1 cut(s)	228
BbrPI	CACGTG	1 cut(s)	248
Bbv12I	GWGCWC	1 cut(s)	91
BccI	CCATC	2 cut(s)	72, 478
BciT130I	CCWGG	2 cut(s)	119, 173
BcnI	CCSGG	2 cut(s)	399, 400
BcoDI	GTCTC	1 cut(s)	211
BfoI	RGCGCY	1 cut(s)	226
BglI	GCCNNNNNGGC	1 cut(s)	237
BisI	GCNGC	5 cut(s)	77, 103, 124, 142, 371
BlsI	GCNGC	5 cut(s)	78, 104, 125, 143, 372
Bme1390I	CCNGG	4 cut(s)	119, 173, 399, 400
Bme18I	GGWCC	1 cut(s)	162
BmeT110I	CYCGRG	1 cut(s)	398
BmgT120I	GGNCC	2 cut(s)	121, 162
BmiI	GGNNCC	2 cut(s)	230, 409
BmrFI	CCNGG	4 cut(s)	119, 173, 399, 400
BmrI	ACTGGG	1 cut(s)	426
BmuI	ACTGGG	1 cut(s)	426
BpuMI	CCSGG	2 cut(s)	399, 400
BsaAI	YACGTR	1 cut(s)	248
BsaJI	CCNNGG	2 cut(s)	118, 398
BsaWI	WCCGGW	2 cut(s)	83, 164
BsaXI	ACNNNNNCTCC	2 cut(s)	12, 42
Bsc4I	CCNNNNNNNGG	4 cut(s)	83, 369, 404, 417
Bse118I	RCCGGY	1 cut(s)	225
Bse1I	ACTGG	1 cut(s)	421
BseAI	TCCGGA	1 cut(s)	164
BseBI	CCWGG	2 cut(s)	119, 173
BseDI	CCNNGG	2 cut(s)	118, 398
BseGI	GGATG	3 cut(s)	64, 311, 489
BseLI	CCNNNNNNNGG	4 cut(s)	83, 369, 404, 417
BseNI	ACTGG	1 cut(s)	421
BseYI	CCCAGC	1 cut(s)	432
Bsh1236I	CGCG	3 cut(s)	79, 189, 202
BshFI	GGCC	3 cut(s)	123, 213, 335
BshNI	GGYRCC	1 cut(s)	228
BsiHKAI	GWGCWC	1 cut(s)	91
BsiHKCI	CYCGRG	1 cut(s)	398
BsiSI	CCGG	6 cut(s)	84, 165, 214, 226, 336, 399
BslI	CCNNNNNNNGG	4 cut(s)	83, 369, 404, 417
BsmAI	GTCTC	1 cut(s)	211
BsnI	GGCC	3 cut(s)	123, 213, 335
BsoBI	CYCGRG	1 cut(s)	398
Bsp1286I	GDGCHC	1 cut(s)	91
Bsp13I	TCCGGA	1 cut(s)	164
Bsp143I	GATC	3 cut(s)	375, 383, 407
BspANI	GGCC	3 cut(s)	123, 213, 335
BspEI	TCCGGA	1 cut(s)	164
BspFNI	CGCG	3 cut(s)	79, 189, 202
BspLI	GGNNCC	2 cut(s)	230, 409
BspPI	GGATC	4 cut(s)	383, 391, 402, 415
BspT107I	GGYRCC	1 cut(s)	228
BsrFI	RCCGGY	1 cut(s)	225
BsrI	ACTGG	1 cut(s)	421
BssAI	RCCGGY	1 cut(s)	225
BssECI	CCNNGG	2 cut(s)	118, 398
BssMI	GATC	3 cut(s)	375, 383, 407
Bst2UI	CCWGG	2 cut(s)	119, 173
Bst4CI	ACNGT	2 cut(s)	162, 261
Bst6I	CTCTTC	1 cut(s)	504
BstBAI	YACGTR	1 cut(s)	248
BstF5I	GGATG	3 cut(s)	64, 311, 489
BstFNI	CGCG	3 cut(s)	79, 189, 202
BstH2I	RGCGCY	1 cut(s)	226
BstHHI	GCGC	3 cut(s)	81, 225, 242
BstKTI	GATC	3 cut(s)	378, 386, 410
BstMAI	GTCTC	1 cut(s)	211
BstMBI	GATC	3 cut(s)	375, 383, 407
BstMWI	GCNNNNNNNGC	1 cut(s)	237
BstNI	CCWGG	2 cut(s)	119, 173
BstSCI	CCNGG	4 cut(s)	117, 171, 397, 398
BstUI	CGCG	3 cut(s)	79, 189, 202
BstX2I	RGATCY	2 cut(s)	383, 407
BstXI	CCANNNNNNTGG	1 cut(s)	153
BstYI	RGATCY	2 cut(s)	383, 407
BsuRI	GGCC	3 cut(s)	123, 213, 335
BtsCI	GGATG	3 cut(s)	64, 311, 489
BtsI	GCAGTG	1 cut(s)	34
BtsIMutI	CAGTG	2 cut(s)	34, 266
CfoI	GCGC	3 cut(s)	81, 225, 242
Cfr10I	RCCGGY	1 cut(s)	225
Cfr13I	GGNCC	2 cut(s)	121, 162
Cfr9I	CCCGGG	1 cut(s)	398
CpoI	CGGWCCG	1 cut(s)	162
CseI	GACGC	1 cut(s)	243
Csp6I	GTAC	1 cut(s)	395
CspI	CGGWCCG	1 cut(s)	162
CviJI	RGCY	7 cut(s)	123, 171, 176, 213, 335, 424, 432
CviKI_1	RGCY	7 cut(s)	123, 171, 176, 213, 335, 424, 432
CviQI	GTAC	1 cut(s)	395
DpnI	GATC	3 cut(s)	377, 385, 409
DpnII	GATC	3 cut(s)	375, 383, 407
DraIII	CACNNNGTG	2 cut(s)	248, 251
EaeI	YGGCCR	1 cut(s)	211
Eam1104I	CTCTTC	1 cut(s)	504
EarI	CTCTTC	1 cut(s)	504
EciI	GGCGGA	2 cut(s)	388, 471
Eco47I	GGWCC	1 cut(s)	162
Eco57I	CTGAAG	1 cut(s)	492
Eco72I	CACGTG	1 cut(s)	248
Eco88I	CYCGRG	1 cut(s)	398
EcoRII	CCWGG	2 cut(s)	117, 171
FaiI	YATR	2 cut(s)	359, 496
FauI	CCCGC	2 cut(s)	107, 287
Fnu4HI	GCNGC	5 cut(s)	77, 103, 124, 142, 371
FokI	GGATG	3 cut(s)	51, 298, 496
Fsp4HI	GCNGC	5 cut(s)	77, 103, 124, 142, 371
GlaI	GCGC	3 cut(s)	80, 224, 241
GluI	GCNGC	5 cut(s)	77, 103, 124, 142, 371
GsaI	CCCAGC	1 cut(s)	436
HaeII	RGCGCY	1 cut(s)	226
HaeIII	GGCC	3 cut(s)	123, 213, 335
HapII	CCGG	6 cut(s)	84, 165, 214, 226, 336, 399
HgaI	GACGC	1 cut(s)	243
HhaI	GCGC	3 cut(s)	81, 225, 242
Hin6I	GCGC	3 cut(s)	79, 223, 240
HinP1I	GCGC	3 cut(s)	79, 223, 240
HinfI	GANTC	1 cut(s)	114
HpaII	CCGG	6 cut(s)	84, 165, 214, 226, 336, 399
HphI	GGTGA	1 cut(s)	365
Hpy166II	GTNNAC	1 cut(s)	395
Hpy188I	TCNGA	6 cut(s)	325, 364, 380, 388, 412, 472
Hpy188III	TCNNGA	1 cut(s)	165
Hpy8I	GTNNAC	1 cut(s)	395
Hpy99I	CGWCG	2 cut(s)	57, 368
HpyAV	CCTTC	3 cut(s)	105, 455, 467
HpyCH4III	ACNGT	2 cut(s)	162, 261
HpyCH4IV	ACGT	1 cut(s)	247
HpyF10VI	GCNNNNNNNGC	1 cut(s)	237
HpySE526I	ACGT	1 cut(s)	247
HspAI	GCGC	3 cut(s)	79, 223, 240
Kpn2I	TCCGGA	1 cut(s)	164
Kzo9I	GATC	3 cut(s)	375, 383, 407
LmnI	GCTCC	3 cut(s)	86, 421, 429
MaeII	ACGT	1 cut(s)	247
MaeIII	GTNAC	1 cut(s)	255
MalI	GATC	3 cut(s)	377, 385, 409
MboI	GATC	3 cut(s)	375, 383, 407
MboII	GAAGA	3 cut(s)	123, 518, 521
MflI	RGATCY	2 cut(s)	383, 407
MhlI	GDGCHC	1 cut(s)	91
MmeI	TCCRAC	2 cut(s)	328, 387
MnlI	CCTC	7 cut(s)	33, 42, 263, 325, 344, 374, 491
MroI	TCCGGA	1 cut(s)	164
MseI	TTAA	2 cut(s)	196, 286
MslI	CAYNNNNRTG	2 cut(s)	131, 151
MspI	CCGG	6 cut(s)	84, 165, 214, 226, 336, 399
MspR9I	CCNGG	4 cut(s)	119, 173, 399, 400
MvaI	CCWGG	2 cut(s)	119, 173
MvnI	CGCG	3 cut(s)	79, 189, 202
MwoI	GCNNNNNNNGC	1 cut(s)	237
NciI	CCSGG	2 cut(s)	399, 400
NdeII	GATC	3 cut(s)	375, 383, 407
NlaIV	GGNNCC	2 cut(s)	230, 409
NmuCI	GTSAC	1 cut(s)	255
PfeI	GAWTC	1 cut(s)	114
PkrI	GCNGC	5 cut(s)	78, 104, 125, 143, 372
PmaCI	CACGTG	1 cut(s)	248
PmlI	CACGTG	1 cut(s)	248
Ppu21I	YACGTR	1 cut(s)	248
Psp6I	CCWGG	2 cut(s)	117, 171
PspCI	CACGTG	1 cut(s)	248
PspFI	CCCAGC	1 cut(s)	432
PspGI	CCWGG	2 cut(s)	117, 171
PspN4I	GGNNCC	2 cut(s)	230, 409
PspPI	GGNCC	2 cut(s)	121, 162
PsuI	RGATCY	2 cut(s)	383, 407
RsaI	GTAC	1 cut(s)	396
RsaNI	GTAC	1 cut(s)	395
RseI	CAYNNNNRTG	2 cut(s)	131, 151
Rsr2I	CGGWCCG	1 cut(s)	162
RsrII	CGGWCCG	1 cut(s)	162
SaqAI	TTAA	2 cut(s)	196, 286
SatI	GCNGC	5 cut(s)	77, 103, 124, 142, 371
Sau3AI	GATC	3 cut(s)	375, 383, 407
Sau96I	GGNCC	2 cut(s)	121, 162
ScrFI	CCNGG	4 cut(s)	119, 173, 399, 400
SduI	GDGCHC	1 cut(s)	91
SetI	ASST	5 cut(s)	25, 250, 355, 426, 434
SgrAI	CRCCGGYG	1 cut(s)	225
SinI	GGWCC	1 cut(s)	162
SmaI	CCCGGG	1 cut(s)	400
SmiMI	CAYNNNNRTG	2 cut(s)	131, 151
SspI	AATATT	1 cut(s)	290
StyD4I	CCNGG	4 cut(s)	117, 171, 397, 398
TaaI	ACNGT	2 cut(s)	162, 261
TaiI	ACGT	1 cut(s)	250
TaqI	TCGA	1 cut(s)	150
TauI	GCSGC	5 cut(s)	79, 105, 126, 144, 373
TfiI	GAWTC	1 cut(s)	114
Tru1I	TTAA	2 cut(s)	196, 286
Tru9I	TTAA	2 cut(s)	196, 286
TscAI	CASTG	2 cut(s)	41, 266
TseFI	GTSAC	1 cut(s)	255
Tsp45I	GTSAC	1 cut(s)	255
TspDTI	ATGAA	1 cut(s)	300
TspGWI	ACGGA	1 cut(s)	304
TspMI	CCCGGG	1 cut(s)	398
TspRI	CASTG	2 cut(s)	41, 266
VpaK11BI	GGWCC	1 cut(s)	162
XmaI	CCCGGG	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.