Prupe.8G121700_v2.0.a1

Carboxylesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000397
Physical Location & Seq
Reverse (-)
14756651 .. 14757598
948 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G121700.1

Sequence Viewer

Length: 948 bp
ATGAGCAACGAAGACTTAGCCCATGATTTCTCTCCAATGATTAAAGTATACAAAGATGGTCGAGTTGAGAGACTCATGGGCACAGAAAGAGTTCCTCCATCAACACATCCAGAAAATGGCGTCCAATCGAAGGACGTTGTGATCTCACAAGAACCAGCCATATCTGCAAGAATTTTCATCCCCAAAACCAGCACACACTCACCCCAAACCAAACTCCCTCTTCTCATTTACTTTCATGGAGGCGGCTTCTGCATTGAAAGTTCATCTTCTCCAGCATATCACAGCTACGTCAACACCTTAGTCTCTGAGGCCAATGTTGTTGCCGTCTCGGTGGACTTCAGGCTTGCCCCAGAGCACCCTCTGCCAGCTGCTTACAATGATTCATGGGCTGCTATCAAATGGGTTGCTTCCCATTTTGATGGAAACGGCTCTGAAGATTGGCTAAATAGATTTGCAGATTTCCAGCGTGTGTTTTTCGCTGGGGACAGCGCTGGTGCTAATATAACACACAACATGGCTGTGAAATTGGGGTGTGAGAGATTGGTTGGTGTTAAGCTGGTTGGGATTGTTTTGGTGCATCCTTACTTTTGGGGCACAGAGCCAGTTGGGGATGAGTTAACTACTCCGGCAGCTGCAAGAGATTATATGGTTGGTGTGTGGCGTTTTGCTTGCCCTTCGACTAGTGGATCCGACGACCCTCTTATAAACCCGGCTAAGGATCAGAAATTGGGTAAATTGGGTTGTGAGAAAGTGCTGGTTTGTGTTGCTGAGAAAGATGTGTTGAAAGATAGAGGATGGCATTATAGTGAGATACTGAAAAAGAGTGGGTGGAATGGTGCTGTGGAGGTCATAGAAGCAAAGGGGGAGGGCCATGTGTTCCATTTGTTCAATCCAATTTGCGACAACGCTGTGGCCTTGGAGAAAAAGATTGTTTCTTTCTTGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

316

Amino Acids

34.57

Weight (kDa)

5.94

Isoelectric Point (pI)

38.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000397)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48690 AT3G48700
fragaria_vesca FvH4_2g06400 FvH4_2g06430 FvH4_2g06450 FvH4_2g06480 FvH4_2g06560
malus_domestica MD05G1076400.v1.1 MD05G1076500.v1.1 MD05G1078900.v1.1 MD05G1191000.v1.1 MD05G1191100.v1.1 MD08G1226300.v1.1 MD10G1091000.v1.1 MD10G1091200.v1.1 MD10G1091400.v1.1 MD10G1091600.v1.1 MD10G1091900.v1.1
prunus_persica Prupe.8G120800_v2.0.a1 Prupe.8G121100_v2.0.a1 Prupe.8G121200_v2.0.a1 Prupe.8G121300_v2.0.a1 Prupe.8G121400_v2.0.a1 Prupe.8G121500_v2.0.a1 Prupe.8G121600_v2.0.a1 Prupe.8G121700_v2.0.a1 Prupe.8G121900_v2.0.a1 Prupe.8G122000_v2.0.a1 Prupe.I000800_v2.0.a1
pyrus_communis pycom05g07040 pycom05g17560 pycom05g17680 pycom05g17760 pycom10g07450 pycom10g07470 pycom10g07550
rosa_chinensis RchiOBHm_Chr6g0258271 RchiOBHm_Chr6g0258281 RchiOBHm_Chr6g0258291 RchiOBHm_Chr6g0258311 RchiOBHm_Chr6g0258321 RchiOBHm_Chr6g0258501
rosa_laevigata RLG00000014606 RLG00000014621 RLG00000014622 RLG00000014624 RLG00000014625 RLG00000014627 RLG00000014629 RLG00000014633 RLG00000014635
rosa_multiflora Rmu_co8014592.1_g000001 Rmu_co8366243.1_g000001 Rmu_sc0001663.1_g000004 Rmu_sc0005877.1_g000001 Rmu_sc0005877.1_g000006 Rmu_sc0005877.1_g000007 Rmu_sc0007367.1_g000009 Rmu_sc0007367.1_g000019 Rmu_sc0010616.1_g000022 Rmu_sc0010616.1_g000023 Rmu_ssc0000213.1_g000009
rosa_roxburghii Rroxscaffold_178G00437230 Rroxscaffold_178G00437250 Rroxscaffold_178G00437280 Rroxscaffold_178G00437320 Rroxscaffold_178G00437340 Rroxscaffold_178G00437350 Rroxscaffold_178G00437480 Rroxscaffold_7G00205390 Rroxscaffold_7G00205410 Rroxscaffold_7G00205450 Rroxscaffold_7G00205490 Rroxscaffold_7G00205510 Rroxscaffold_7G00205520 Rroxscaffold_7G00205670 Rroxscaffold_7G00205730
rosa_rugosa Rorug05G0579800 Rorug05G0580500 Rorug05G0580600 Rorug05G0580700 Rorug05G0580900 Rorug05G0581000 Rorug05G0581900
rosa_samantha Rh6CG084800 Rh6CG085100 Rh6CG085200 Rh6CG085400 Rh6CG085500 Rh6CG085600 Rh6CG085700 Rh6CG086900
rosa_wichuraiana Rw6G008300 Rw6G008310 Rw6G008360 Rw6G008370 Rw6G008380 Rw6G008390 Rw6G008430 Rw6G008440 Rw6G008530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 704
AccB7I CCANNNNNTGG 1 cut(s) 116
AccI GTMKAC 1 cut(s) 48
AciI CCGC 1 cut(s) 243
AclWI GGATC 3 cut(s) 681, 694, 726
AcsI RAATTY 1 cut(s) 171
AcuI CTGAAG 2 cut(s) 322, 453
AcyI GRCGYC 1 cut(s) 120
AfeI AGCGCT 1 cut(s) 490
AfiI CCNNNNNNNGG 3 cut(s) 116, 130, 715
AgsI TTSAA 4 cut(s) 257, 784, 889, 943
AhlI ACTAGT 1 cut(s) 680
AluBI AGCT 4 cut(s) 285, 368, 556, 632
AluI AGCT 4 cut(s) 285, 368, 556, 632
Alw21I GWGCWC 1 cut(s) 357
Alw26I GTCTC 3 cut(s) 64, 307, 331
AlwI GGATC 3 cut(s) 681, 694, 726
Aor51HI AGCGCT 1 cut(s) 490
AoxI GGCC 3 cut(s) 309, 868, 912
ApeKI GCWGC 4 cut(s) 368, 389, 629, 632
ApoI RAATTY 1 cut(s) 171
Asp700I GAANNNNTTC 1 cut(s) 90
AspLEI GCGC 1 cut(s) 491
AspS9I GGNCC 1 cut(s) 868
AsuC2I CCSGG 1 cut(s) 710
AsuHPI GGTGA 1 cut(s) 192
BaeGI GKGCMC 2 cut(s) 83, 596
BamHI GGATCC 1 cut(s) 686
BbsI GAAGAC 1 cut(s) 18
Bbv12I GWGCWC 1 cut(s) 357
BbvI GCAGC 4 cut(s) 355, 376, 619, 641
BccI CCATC 4 cut(s) 50, 106, 413, 789
BceAI ACGGC 2 cut(s) 308, 442
BcnI CCSGG 1 cut(s) 710
BcoDI GTCTC 3 cut(s) 64, 307, 331
BcuI ACTAGT 1 cut(s) 680
BfaI CTAG 2 cut(s) 681, 946
BfoI RGCGCY 1 cut(s) 492
BisI GCNGC 5 cut(s) 244, 369, 390, 630, 633
BlsI GCNGC 5 cut(s) 245, 370, 391, 631, 634
Bme1390I CCNGG 1 cut(s) 710
BmgT120I GGNCC 1 cut(s) 868
BmiI GGNNCC 1 cut(s) 688
BmrFI CCNGG 1 cut(s) 710
BmsI GCATC 1 cut(s) 586
BpiI GAAGAC 1 cut(s) 18
BpmI CTGGAG 1 cut(s) 255
Bpu10I CCTNAGC 1 cut(s) 714
BpuMI CCSGG 1 cut(s) 710
BsaHI GRCGYC 1 cut(s) 120
BsaJI CCNNGG 1 cut(s) 915
Bsc4I CCNNNNNNNGG 3 cut(s) 116, 130, 715
Bse1I ACTGG 1 cut(s) 602
BseDI CCNNGG 1 cut(s) 915
BseGI GGATG 5 cut(s) 106, 177, 577, 616, 800
BseLI CCNNNNNNNGG 3 cut(s) 116, 130, 715
BseMII CTCAG 2 cut(s) 297, 759
BseNI ACTGG 1 cut(s) 602
BseSI GKGCMC 2 cut(s) 83, 596
BseXI GCAGC 4 cut(s) 355, 376, 619, 641
BseYI CCCAGC 1 cut(s) 479
BshFI GGCC 3 cut(s) 311, 870, 914
BsiHKAI GWGCWC 1 cut(s) 357
BsiSI CCGG 2 cut(s) 626, 710
BslFI GGGAC 1 cut(s) 497
BslI CCNNNNNNNGG 3 cut(s) 116, 130, 715
BsmAI GTCTC 3 cut(s) 64, 307, 331
BsmBI CGTCTC 1 cut(s) 331
BsmFI GGGAC 1 cut(s) 497
BsnI GGCC 3 cut(s) 311, 870, 914
Bsp1286I GDGCHC 3 cut(s) 83, 357, 596
Bsp143I GATC 3 cut(s) 141, 686, 718
BspACI CCGC 1 cut(s) 243
BspANI GGCC 3 cut(s) 311, 870, 914
BspCNI CTCAG 2 cut(s) 298, 760
BspLI GGNNCC 1 cut(s) 688
BspPI GGATC 3 cut(s) 681, 694, 726
BsrI ACTGG 1 cut(s) 602
BssECI CCNNGG 1 cut(s) 915
BssMI GATC 3 cut(s) 141, 686, 718
BssNAI GTATAC 1 cut(s) 49
BssNI GRCGYC 1 cut(s) 120
BssT1I CCWWGG 1 cut(s) 915
Bst1107I GTATAC 1 cut(s) 49
Bst6I CTCTTC 1 cut(s) 225
BstACI GRCGYC 1 cut(s) 120
BstAPI GCANNNNNTGC 1 cut(s) 361
BstC8I GCNNGC 3 cut(s) 345, 366, 670
BstDEI CTNAG 5 cut(s) 16, 298, 306, 714, 768
BstF5I GGATG 5 cut(s) 106, 177, 577, 616, 800
BstH2I RGCGCY 1 cut(s) 492
BstHHI GCGC 1 cut(s) 491
BstKTI GATC 3 cut(s) 144, 689, 721
BstMAI GTCTC 3 cut(s) 64, 307, 331
BstMBI GATC 3 cut(s) 141, 686, 718
BstMWI GCNNNNNNNGC 3 cut(s) 164, 249, 361
BstSCI CCNGG 1 cut(s) 708
BstSLI GKGCMC 2 cut(s) 83, 596
BstV1I GCAGC 4 cut(s) 355, 376, 619, 641
BstV2I GAAGAC 1 cut(s) 18
BstX2I RGATCY 1 cut(s) 686
BstXI CCANNNNNNTGG 1 cut(s) 419
BstYI RGATCY 1 cut(s) 686
BstZ17I GTATAC 1 cut(s) 49
BsuRI GGCC 3 cut(s) 311, 870, 914
BtsCI GGATG 5 cut(s) 106, 177, 577, 616, 800
Cac8I GCNNGC 3 cut(s) 345, 366, 670
CfoI GCGC 1 cut(s) 491
Cfr13I GGNCC 1 cut(s) 868
CseI GACGC 1 cut(s) 109
CviAII CATG 6 cut(s) 23, 76, 236, 384, 514, 872
DdeI CTNAG 5 cut(s) 16, 298, 306, 714, 768
DpnI GATC 3 cut(s) 143, 688, 720
DpnII GATC 3 cut(s) 141, 686, 718
Eam1104I CTCTTC 1 cut(s) 225
EarI CTCTTC 1 cut(s) 225
Eco130I CCWWGG 1 cut(s) 915
Eco47III AGCGCT 1 cut(s) 490
Eco57I CTGAAG 2 cut(s) 322, 453
EcoT14I CCWWGG 1 cut(s) 915
ErhI CCWWGG 1 cut(s) 915
Esp3I CGTCTC 1 cut(s) 331
FaeI CATG 6 cut(s) 26, 79, 239, 387, 517, 875
FalI AAGNNNNNCTT 2 cut(s) 250, 282
FaqI GGGAC 1 cut(s) 497
FatI CATG 6 cut(s) 22, 75, 235, 383, 513, 871
FblI GTMKAC 1 cut(s) 48
Fnu4HI GCNGC 5 cut(s) 244, 369, 390, 630, 633
FokI GGATG 5 cut(s) 93, 164, 564, 623, 807
Fsp4HI GCNGC 5 cut(s) 244, 369, 390, 630, 633
FspBI CTAG 2 cut(s) 681, 946
GlaI GCGC 1 cut(s) 490
GluI GCNGC 5 cut(s) 244, 369, 390, 630, 633
GsaI CCCAGC 1 cut(s) 483
GsuI CTGGAG 1 cut(s) 255
HaeII RGCGCY 1 cut(s) 492
HaeIII GGCC 3 cut(s) 311, 870, 914
HapII CCGG 2 cut(s) 626, 710
HgaI GACGC 1 cut(s) 109
HhaI GCGC 1 cut(s) 491
Hin1I GRCGYC 1 cut(s) 120
Hin1II CATG 6 cut(s) 26, 79, 239, 387, 517, 875
Hin6I GCGC 1 cut(s) 489
HinP1I GCGC 1 cut(s) 489
HincII GTYRAC 2 cut(s) 292, 618
HindII GTYRAC 2 cut(s) 292, 618
HinfI GANTC 2 cut(s) 72, 380
HpaI GTTAAC 1 cut(s) 618
HpaII CCGG 2 cut(s) 626, 710
HphI GGTGA 1 cut(s) 192
Hpy166II GTNNAC 4 cut(s) 49, 292, 334, 618
Hpy188I TCNGA 4 cut(s) 307, 433, 691, 723
Hpy188III TCNNGA 2 cut(s) 110, 940
Hpy8I GTNNAC 4 cut(s) 49, 292, 334, 618
Hpy99I CGWCG 1 cut(s) 695
HpyAV CCTTC 2 cut(s) 124, 684
HpyCH4IV ACGT 2 cut(s) 135, 288
HpyCH4V TGCA 5 cut(s) 167, 252, 455, 577, 635
HpyF10VI GCNNNNNNNGC 3 cut(s) 164, 249, 361
HpyF3I CTNAG 5 cut(s) 16, 298, 306, 714, 768
HpySE526I ACGT 2 cut(s) 135, 288
Hsp92I GRCGYC 1 cut(s) 120
Hsp92II CATG 6 cut(s) 26, 79, 239, 387, 517, 875
HspAI GCGC 1 cut(s) 489
KspAI GTTAAC 1 cut(s) 618
Kzo9I GATC 3 cut(s) 141, 686, 718
Lsp1109I GCAGC 4 cut(s) 355, 376, 619, 641
LweI GCATC 1 cut(s) 586
MaeI CTAG 2 cut(s) 681, 946
MaeII ACGT 2 cut(s) 135, 288
MalI GATC 3 cut(s) 143, 688, 720
MboI GATC 3 cut(s) 141, 686, 718
MboII GAAGA 4 cut(s) 23, 212, 258, 446
MflI RGATCY 1 cut(s) 686
MhlI GDGCHC 3 cut(s) 83, 357, 596
MluCI AATT 5 cut(s) 171, 524, 725, 734, 894
MlyI GAGTC 1 cut(s) 66
MmeI TCCRAC 1 cut(s) 714
MnlI CCTC 9 cut(s) 105, 228, 233, 301, 369, 708, 785, 838, 859
MroXI GAANNNNTTC 1 cut(s) 90
MseI TTAA 3 cut(s) 42, 552, 617
MslI CAYNNNNRTG 3 cut(s) 417, 518, 804
MspA1I CMGCKG 2 cut(s) 368, 632
MspI CCGG 2 cut(s) 626, 710
MspR9I CCNGG 1 cut(s) 710
MwoI GCNNNNNNNGC 3 cut(s) 164, 249, 361
NciI CCSGG 1 cut(s) 710
NdeII GATC 3 cut(s) 141, 686, 718
NlaIII CATG 6 cut(s) 26, 79, 239, 387, 517, 875
NlaIV GGNNCC 1 cut(s) 688
PdmI GAANNNNTTC 1 cut(s) 90
PfeI GAWTC 1 cut(s) 380
PflMI CCANNNNNTGG 1 cut(s) 116
PkrI GCNGC 5 cut(s) 245, 370, 391, 631, 634
PleI GAGTC 1 cut(s) 66
PpsI GAGTC 1 cut(s) 66
PsiI TTATAA 1 cut(s) 704
PspFI CCCAGC 1 cut(s) 479
PspN4I GGNNCC 1 cut(s) 688
PspPI GGNCC 1 cut(s) 868
PsuI RGATCY 1 cut(s) 686
PvuII CAGCTG 2 cut(s) 368, 632
RseI CAYNNNNRTG 3 cut(s) 417, 518, 804
SaqAI TTAA 3 cut(s) 42, 552, 617
SatI GCNGC 5 cut(s) 244, 369, 390, 630, 633
Sau3AI GATC 3 cut(s) 141, 686, 718
Sau96I GGNCC 1 cut(s) 868
SchI GAGTC 1 cut(s) 66
ScrFI CCNGG 1 cut(s) 710
SduI GDGCHC 3 cut(s) 83, 357, 596
SetI ASST 8 cut(s) 138, 287, 291, 299, 370, 558, 634, 849
SfaNI GCATC 1 cut(s) 586
SmiMI CAYNNNNRTG 3 cut(s) 417, 518, 804
SpeI ACTAGT 1 cut(s) 680
Sse9I AATT 5 cut(s) 171, 524, 725, 734, 894
SsiI CCGC 1 cut(s) 243
SspMI CTAG 2 cut(s) 681, 946
StyD4I CCNGG 1 cut(s) 708
StyI CCWWGG 1 cut(s) 915
TaiI ACGT 2 cut(s) 138, 291
TaqI TCGA 3 cut(s) 61, 128, 677
TasI AATT 5 cut(s) 171, 524, 725, 734, 894
TauI GCSGC 1 cut(s) 246
TfiI GAWTC 1 cut(s) 380
Tru1I TTAA 3 cut(s) 42, 552, 617
Tru9I TTAA 3 cut(s) 42, 552, 617
TseI GCWGC 4 cut(s) 368, 389, 629, 632
TspDTI ATGAA 4 cut(s) 166, 224, 252, 372
Van91I CCANNNNNTGG 1 cut(s) 116
XapI RAATTY 1 cut(s) 171
XmiI GTMKAC 1 cut(s) 48
XmnI GAANNNNTTC 1 cut(s) 90
XspI CTAG 2 cut(s) 681, 946
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.