Prupe.8G121300_v2.0.a1

Carboxylesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000397
Physical Location & Seq
Reverse (-)
14744423 .. 14745696
1274 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G121300.1

Sequence Viewer

Length: 1074 bp
ATGCCAAGAAAAATGCCTACAATGTTATCCATAATTGTGTTCATTGTTCTATTCTCTTCCATGGCTCCAACCATGAGCCAGGGCTTTGCCCCTGATTTATCTCCTCCCATGAGCCATGCCGTTGCCATTGATTTCTCTCCTCTCGTGAAAATATATGTAAACGGGACGATCGAGAGACTCATAGGAAAATCAAGCGTTCCTCCATCGCTTGATCCTAAAACTGGCGTTCAATCTAAAGACGTTGCAATCTCTCGAAGAAGGGGCATATCTGCAAGGCTTTACCTCCCCAACTCCGTCACCAACTCCACCACCAACTCAACCCAAAGCAAACTCCCTCTTCTTGTTTACTTTCATGGAGGTGGCTTCTGTGTTGAACATGCCTCTTCTCCCACATATCACAACTACCTCAACTCCCTAGTCACCGCGGCCAACGTTGTTGCTGTCTCTGTTGACTATAGGCTAGCCCCAGAGCACCCTCTGCCTATTGCTTACCAAGACTCATGGGCTGCTCTCAATTGGGTTTCTTCTCATTTTGGTGGTGGAAACCGCTCCGAGGAGTGGCTTAGTAGATATGCAGATCCACAGCGTGTGTTTTTCTCTGGTGACAGCGCTGGGGCTAACATAGCACACCAGATGGCTATGAAATTAGGCTCTGACAGATTGAATGGTTTTAAGCTGAATGGAATTGTGTTGGTGCATCCATTTTTTTGGGGGTCACAACCAGTTGGGGCAGAGGCAACTCTGCCTGTAGTTGTGAGCTTGTATATGACTGCATTGTGGCGTTTTGTGAACCCTACGAGTTTTGGACCCGATGACCCGCTTTTCAACCCGACTATGGATCCGAAATTGAGGGAGTTGGGGTGTGGGAAAGTTCTGGTTTTTGTTGCTGGGAAAGATGCGTTGAAAGATAGGGGATTGTATTATGGTGACGTACTCAAAAAGAGTGGATGGAAAGGGGTTGTGGAGGTCATTGAATCAAAGGGGGAGAGCCATGTATTCCATTTGTTCAGTCCCCCTAATAAGAATTCTGCTGCCATGCTTGAGAAGATTGTTTCCTTCTTGCATCAGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

358

Amino Acids

39.0

Weight (kDa)

9.18

Isoelectric Point (pI)

41.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000397)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48690 AT3G48700
fragaria_vesca FvH4_2g06400 FvH4_2g06430 FvH4_2g06450 FvH4_2g06480 FvH4_2g06560
malus_domestica MD05G1076400.v1.1 MD05G1076500.v1.1 MD05G1078900.v1.1 MD05G1191000.v1.1 MD05G1191100.v1.1 MD08G1226300.v1.1 MD10G1091000.v1.1 MD10G1091200.v1.1 MD10G1091400.v1.1 MD10G1091600.v1.1 MD10G1091900.v1.1
prunus_persica Prupe.8G120800_v2.0.a1 Prupe.8G121100_v2.0.a1 Prupe.8G121200_v2.0.a1 Prupe.8G121300_v2.0.a1 Prupe.8G121400_v2.0.a1 Prupe.8G121500_v2.0.a1 Prupe.8G121600_v2.0.a1 Prupe.8G121700_v2.0.a1 Prupe.8G121900_v2.0.a1 Prupe.8G122000_v2.0.a1 Prupe.I000800_v2.0.a1
pyrus_communis pycom05g07040 pycom05g17560 pycom05g17680 pycom05g17760 pycom10g07450 pycom10g07470 pycom10g07550
rosa_chinensis RchiOBHm_Chr6g0258271 RchiOBHm_Chr6g0258281 RchiOBHm_Chr6g0258291 RchiOBHm_Chr6g0258311 RchiOBHm_Chr6g0258321 RchiOBHm_Chr6g0258501
rosa_laevigata RLG00000014606 RLG00000014621 RLG00000014622 RLG00000014624 RLG00000014625 RLG00000014627 RLG00000014629 RLG00000014633 RLG00000014635
rosa_multiflora Rmu_co8014592.1_g000001 Rmu_co8366243.1_g000001 Rmu_sc0001663.1_g000004 Rmu_sc0005877.1_g000001 Rmu_sc0005877.1_g000006 Rmu_sc0005877.1_g000007 Rmu_sc0007367.1_g000009 Rmu_sc0007367.1_g000019 Rmu_sc0010616.1_g000022 Rmu_sc0010616.1_g000023 Rmu_ssc0000213.1_g000009
rosa_roxburghii Rroxscaffold_178G00437230 Rroxscaffold_178G00437250 Rroxscaffold_178G00437280 Rroxscaffold_178G00437320 Rroxscaffold_178G00437340 Rroxscaffold_178G00437350 Rroxscaffold_178G00437480 Rroxscaffold_7G00205390 Rroxscaffold_7G00205410 Rroxscaffold_7G00205450 Rroxscaffold_7G00205490 Rroxscaffold_7G00205510 Rroxscaffold_7G00205520 Rroxscaffold_7G00205670 Rroxscaffold_7G00205730
rosa_rugosa Rorug05G0579800 Rorug05G0580500 Rorug05G0580600 Rorug05G0580700 Rorug05G0580900 Rorug05G0581000 Rorug05G0581900
rosa_samantha Rh6CG084800 Rh6CG085100 Rh6CG085200 Rh6CG085400 Rh6CG085500 Rh6CG085600 Rh6CG085700 Rh6CG086900
rosa_wichuraiana Rw6G008300 Rw6G008310 Rw6G008360 Rw6G008370 Rw6G008380 Rw6G008390 Rw6G008430 Rw6G008440 Rw6G008530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 549
AccII CGCG 1 cut(s) 425
AciI CCGC 4 cut(s) 423, 425, 547, 818
AclI AACGTT 1 cut(s) 432
AclWI GGATC 4 cut(s) 206, 572, 833, 846
AcoI YGGCCR 1 cut(s) 426
AcsI RAATTY 1 cut(s) 1024
AdeI CACNNNGTG 1 cut(s) 587
AfaI GTAC 1 cut(s) 933
AfeI AGCGCT 1 cut(s) 610
AfiI CCNNNNNNNGG 4 cut(s) 221, 553, 558, 835
AgsI TTSAA 6 cut(s) 230, 374, 664, 826, 904, 974
AjnI CCWGG 1 cut(s) 78
AluBI AGCT 2 cut(s) 676, 759
AluI AGCT 2 cut(s) 676, 759
Alw21I GWGCWC 1 cut(s) 474
Alw26I GTCTC 2 cut(s) 169, 448
AlwI GGATC 4 cut(s) 206, 572, 833, 846
Aor51HI AGCGCT 1 cut(s) 610
AoxI GGCC 1 cut(s) 426
ApeKI GCWGC 2 cut(s) 506, 1031
ApoI RAATTY 1 cut(s) 1024
AspLEI GCGC 1 cut(s) 611
AspS9I GGNCC 1 cut(s) 806
AsuHPI GGTGA 4 cut(s) 289, 412, 614, 938
AsuNHI GCTAGC 1 cut(s) 460
AvaII GGWCC 1 cut(s) 806
BamHI GGATCC 1 cut(s) 838
BauI CACGAG 1 cut(s) 143
Bbv12I GWGCWC 1 cut(s) 474
BbvI GCAGC 2 cut(s) 493, 1018
BccI CCATC 3 cut(s) 211, 628, 942
BceAI ACGGC 1 cut(s) 104
BciT130I CCWGG 1 cut(s) 80
BcoDI GTCTC 2 cut(s) 169, 448
BfaI CTAG 2 cut(s) 416, 461
BfmI CTRYAG 2 cut(s) 454, 747
BfoI RGCGCY 1 cut(s) 612
BisI GCNGC 3 cut(s) 426, 507, 1032
BlsI GCNGC 3 cut(s) 427, 508, 1033
Bme1390I CCNGG 1 cut(s) 80
Bme18I GGWCC 1 cut(s) 806
BmgT120I GGNCC 1 cut(s) 806
BmiI GGNNCC 3 cut(s) 66, 808, 840
BmrFI CCNGG 1 cut(s) 80
BmsI GCATC 2 cut(s) 706, 886
BmtI GCTAGC 1 cut(s) 464
BpuEI CTTGAG 1 cut(s) 1061
BsaJI CCNNGG 4 cut(s) 60, 79, 423, 552
BsaXI ACNNNNNCTCC 4 cut(s) 395, 425, 845, 875
Bsc4I CCNNNNNNNGG 4 cut(s) 221, 553, 558, 835
Bse1I ACTGG 2 cut(s) 226, 722
BseBI CCWGG 1 cut(s) 80
BseDI CCNNGG 4 cut(s) 60, 79, 423, 552
BseGI GGATG 2 cut(s) 697, 953
BseLI CCNNNNNNNGG 4 cut(s) 221, 553, 558, 835
BseNI ACTGG 2 cut(s) 226, 722
BseRI GAGGAG 3 cut(s) 93, 129, 569
BseXI GCAGC 2 cut(s) 493, 1018
BseYI CCCAGC 2 cut(s) 611, 887
Bsh1236I CGCG 1 cut(s) 425
Bsh1285I CGRYCG 1 cut(s) 171
BshFI GGCC 1 cut(s) 428
BsiEI CGRYCG 1 cut(s) 171
BsiHKAI GWGCWC 1 cut(s) 474
BslFI GGGAC 2 cut(s) 178, 996
BslI CCNNNNNNNGG 4 cut(s) 221, 553, 558, 835
BsmAI GTCTC 2 cut(s) 169, 448
BsmFI GGGAC 2 cut(s) 178, 996
BsnI GGCC 1 cut(s) 428
Bsp1286I GDGCHC 1 cut(s) 474
Bsp143I GATC 4 cut(s) 168, 211, 577, 838
Bsp19I CCATGG 1 cut(s) 60
BspACI CCGC 4 cut(s) 423, 425, 547, 818
BspANI GGCC 1 cut(s) 428
BspFNI CGCG 1 cut(s) 425
BspLI GGNNCC 3 cut(s) 66, 808, 840
BspOI GCTAGC 1 cut(s) 464
BspPI GGATC 4 cut(s) 206, 572, 833, 846
BsrBI CCGCTC 1 cut(s) 549
BsrI ACTGG 2 cut(s) 226, 722
BssECI CCNNGG 4 cut(s) 60, 79, 423, 552
BssMI GATC 4 cut(s) 168, 211, 577, 838
BssSI CACGAG 1 cut(s) 143
BssT1I CCWWGG 1 cut(s) 60
Bst2BI CACGAG 1 cut(s) 143
Bst2UI CCWGG 1 cut(s) 80
Bst6I CTCTTC 3 cut(s) 61, 342, 388
BstAPI GCANNNNNTGC 1 cut(s) 478
BstC8I GCNNGC 1 cut(s) 462
BstDEI CTNAG 1 cut(s) 563
BstDSI CCRYGG 2 cut(s) 60, 423
BstF5I GGATG 2 cut(s) 697, 953
BstFNI CGCG 1 cut(s) 425
BstH2I RGCGCY 1 cut(s) 612
BstHHI GCGC 1 cut(s) 611
BstKTI GATC 4 cut(s) 171, 214, 580, 841
BstMAI GTCTC 2 cut(s) 169, 448
BstMBI GATC 4 cut(s) 168, 211, 577, 838
BstMCI CGRYCG 1 cut(s) 171
BstMWI GCNNNNNNNGC 2 cut(s) 478, 623
BstNI CCWGG 1 cut(s) 80
BstNSI RCATGY 1 cut(s) 380
BstSCI CCNGG 1 cut(s) 78
BstSFI CTRYAG 2 cut(s) 454, 747
BstUI CGCG 1 cut(s) 425
BstV1I GCAGC 2 cut(s) 493, 1018
BstX2I RGATCY 2 cut(s) 577, 838
BstXI CCANNNNNNTGG 1 cut(s) 708
BstYI RGATCY 2 cut(s) 577, 838
BsuRI GGCC 1 cut(s) 428
BtgI CCRYGG 2 cut(s) 60, 423
BtgZI GCGATG 1 cut(s) 189
BtsCI GGATG 2 cut(s) 697, 953
Cac8I GCNNGC 1 cut(s) 462
CfoI GCGC 1 cut(s) 611
Cfr13I GGNCC 1 cut(s) 806
Cfr42I CCGCGG 1 cut(s) 426
Csp6I GTAC 1 cut(s) 932
CspCI CAANNNNNGTGG 2 cut(s) 925, 960
CviAII CATG 9 cut(s) 61, 73, 109, 116, 353, 377, 501, 992, 1036
CviQI GTAC 1 cut(s) 932
DdeI CTNAG 1 cut(s) 563
DpnI GATC 4 cut(s) 170, 213, 579, 840
DpnII GATC 4 cut(s) 168, 211, 577, 838
DraIII CACNNNGTG 1 cut(s) 587
EaeI YGGCCR 1 cut(s) 426
Eam1104I CTCTTC 3 cut(s) 61, 342, 388
EarI CTCTTC 3 cut(s) 61, 342, 388
Eco130I CCWWGG 1 cut(s) 60
Eco47I GGWCC 1 cut(s) 806
Eco47III AGCGCT 1 cut(s) 610
EcoRI GAATTC 1 cut(s) 1024
EcoRII CCWGG 1 cut(s) 78
EcoT14I CCWWGG 1 cut(s) 60
ErhI CCWWGG 1 cut(s) 60
FaeI CATG 9 cut(s) 64, 76, 112, 119, 356, 380, 504, 995, 1039
FaqI GGGAC 2 cut(s) 178, 996
FatI CATG 9 cut(s) 60, 72, 108, 115, 352, 376, 500, 991, 1035
FauI CCCGC 1 cut(s) 825
Fnu4HI GCNGC 3 cut(s) 426, 507, 1032
FokI GGATG 2 cut(s) 684, 960
Fsp4HI GCNGC 3 cut(s) 426, 507, 1032
FspBI CTAG 2 cut(s) 416, 461
GlaI GCGC 1 cut(s) 610
GluI GCNGC 3 cut(s) 426, 507, 1032
GsaI CCCAGC 2 cut(s) 615, 891
HaeII RGCGCY 1 cut(s) 612
HaeIII GGCC 1 cut(s) 428
HhaI GCGC 1 cut(s) 611
Hin1II CATG 9 cut(s) 64, 76, 112, 119, 356, 380, 504, 995, 1039
Hin6I GCGC 1 cut(s) 609
HinP1I GCGC 1 cut(s) 609
HincII GTYRAC 1 cut(s) 451
HindII GTYRAC 1 cut(s) 451
HinfI GANTC 3 cut(s) 177, 497, 974
HphI GGTGA 4 cut(s) 289, 412, 614, 938
Hpy166II GTNNAC 4 cut(s) 160, 346, 451, 790
Hpy188I TCNGA 3 cut(s) 553, 655, 843
Hpy188III TCNNGA 4 cut(s) 145, 172, 252, 1071
Hpy8I GTNNAC 4 cut(s) 160, 346, 451, 790
HpyAV CCTTC 2 cut(s) 252, 1066
HpyCH4IV ACGT 3 cut(s) 240, 432, 930
HpyCH4V TGCA 6 cut(s) 245, 272, 575, 697, 773, 1063
HpyF10VI GCNNNNNNNGC 2 cut(s) 478, 623
HpyF3I CTNAG 1 cut(s) 563
HpySE526I ACGT 3 cut(s) 240, 432, 930
Hsp92II CATG 9 cut(s) 64, 76, 112, 119, 356, 380, 504, 995, 1039
HspAI GCGC 1 cut(s) 609
KspI CCGCGG 1 cut(s) 426
Kzo9I GATC 4 cut(s) 168, 211, 577, 838
LmnI GCTCC 2 cut(s) 70, 554
Lsp1109I GCAGC 2 cut(s) 493, 1018
LweI GCATC 2 cut(s) 706, 886
MaeI CTAG 2 cut(s) 416, 461
MaeII ACGT 3 cut(s) 240, 432, 930
MaeIII GTNAC 5 cut(s) 295, 418, 602, 714, 926
MalI GATC 4 cut(s) 170, 213, 579, 840
MbiI CCGCTC 1 cut(s) 549
MboI GATC 4 cut(s) 168, 211, 577, 838
MboII GAAGA 6 cut(s) 48, 267, 329, 375, 516, 1057
MfeI CAATTG 1 cut(s) 514
MflI RGATCY 2 cut(s) 577, 838
MhlI GDGCHC 1 cut(s) 474
MluCI AATT 6 cut(s) 33, 514, 644, 684, 845, 1024
MlyI GAGTC 2 cut(s) 171, 491
MmeI TCCRAC 1 cut(s) 92
MseI TTAA 1 cut(s) 672
MslI CAYNNNNRTG 3 cut(s) 35, 357, 534
MspA1I CMGCKG 1 cut(s) 425
MspR9I CCNGG 1 cut(s) 80
MunI CAATTG 1 cut(s) 514
MvaI CCWGG 1 cut(s) 80
MvnI CGCG 1 cut(s) 425
MwoI GCNNNNNNNGC 2 cut(s) 478, 623
NcoI CCATGG 1 cut(s) 60
NdeII GATC 4 cut(s) 168, 211, 577, 838
NheI GCTAGC 1 cut(s) 460
NlaIII CATG 9 cut(s) 64, 76, 112, 119, 356, 380, 504, 995, 1039
NlaIV GGNNCC 3 cut(s) 66, 808, 840
NmuCI GTSAC 5 cut(s) 295, 418, 602, 714, 926
NspI RCATGY 1 cut(s) 380
PcsI WCGNNNNNNNCGW 1 cut(s) 168
PfeI GAWTC 1 cut(s) 974
PkrI GCNGC 3 cut(s) 427, 508, 1033
Ple19I CGATCG 1 cut(s) 171
PleI GAGTC 2 cut(s) 171, 491
PpsI GAGTC 2 cut(s) 171, 491
Psp1406I AACGTT 1 cut(s) 432
Psp6I CCWGG 1 cut(s) 78
PspFI CCCAGC 2 cut(s) 611, 887
PspGI CCWGG 1 cut(s) 78
PspN4I GGNNCC 3 cut(s) 66, 808, 840
PspPI GGNCC 1 cut(s) 806
PsuI RGATCY 2 cut(s) 577, 838
PvuI CGATCG 1 cut(s) 171
RsaI GTAC 1 cut(s) 933
RsaNI GTAC 1 cut(s) 932
RseI CAYNNNNRTG 3 cut(s) 35, 357, 534
SacII CCGCGG 1 cut(s) 426
SaqAI TTAA 1 cut(s) 672
SatI GCNGC 3 cut(s) 426, 507, 1032
Sau3AI GATC 4 cut(s) 168, 211, 577, 838
Sau96I GGNCC 1 cut(s) 806
SchI GAGTC 2 cut(s) 171, 491
ScrFI CCNGG 1 cut(s) 80
SduI GDGCHC 1 cut(s) 474
SetI ASST 9 cut(s) 243, 285, 361, 408, 435, 678, 761, 933, 969
SfaNI GCATC 2 cut(s) 706, 886
SfcI CTRYAG 2 cut(s) 454, 747
Sfr303I CCGCGG 1 cut(s) 426
SgrBI CCGCGG 1 cut(s) 426
SinI GGWCC 1 cut(s) 806
SmiMI CAYNNNNRTG 3 cut(s) 35, 357, 534
SmlI CTYRAG 1 cut(s) 1040
SmoI CTYRAG 1 cut(s) 1040
Sse9I AATT 6 cut(s) 33, 514, 644, 684, 845, 1024
SsiI CCGC 4 cut(s) 423, 425, 547, 818
SspMI CTAG 2 cut(s) 416, 461
StyD4I CCNGG 1 cut(s) 78
StyI CCWWGG 1 cut(s) 60
TaiI ACGT 3 cut(s) 243, 435, 933
TaqI TCGA 2 cut(s) 171, 253
TasI AATT 6 cut(s) 33, 514, 644, 684, 845, 1024
TauI GCSGC 1 cut(s) 428
TfiI GAWTC 1 cut(s) 974
Tru1I TTAA 1 cut(s) 672
Tru9I TTAA 1 cut(s) 672
TseFI GTSAC 5 cut(s) 295, 418, 602, 714, 926
TseI GCWGC 2 cut(s) 506, 1031
Tsp45I GTSAC 5 cut(s) 295, 418, 602, 714, 926
TspDTI ATGAA 3 cut(s) 31, 341, 656
TspGWI ACGGA 1 cut(s) 283
VpaK11BI GGWCC 1 cut(s) 806
XapI RAATTY 1 cut(s) 1024
XceI RCATGY 1 cut(s) 380
XspI CTAG 2 cut(s) 416, 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.