RLG00000014625

Carboxylesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000397
Physical Location & Seq
Reverse (-)
55533711 .. 55534091
381 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014625

Sequence Viewer

Length: 381 bp
ATGGAGTCCCATTTCGCCAGAACCAGCTCGGAAGAGTGGCTGAACTGGCATGCACATTTGAACTGGGTTTTCTTTTCAGGTGATAGTGCTGGGGCTAACATAGTTCACCACATGGGTTTGAGAATTGGGTTTGAGAAGTTGGTGGGTTTTAAGCTGAATGGGATTGTTCTGGTGCATCCGTACTTTTGGGGTGAAGAACCAATAGGGAGAGAGCTAGCTTTGGCCGAGAGTCATAGAAAGATGTTGGCTGCTTTGTGGAGGTTTAGTTACCCATTGATTAGTGGATCCGATGACCCATTTTTCAATCAGGGAAAGGATTCGAAGTTGGGGGAGTTGGGTGTGAGAAAGTGTTGGTCTGTGCTGCGGAGAAGGATTCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

127

Amino Acids

14.55

Weight (kDa)

9.3

Isoelectric Point (pI)

36.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_3 PF07859 10 - 111 7.4e-10 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000397)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48690 AT3G48700
fragaria_vesca FvH4_2g06400 FvH4_2g06430 FvH4_2g06450 FvH4_2g06480 FvH4_2g06560
malus_domestica MD05G1076400.v1.1 MD05G1076500.v1.1 MD05G1078900.v1.1 MD05G1191000.v1.1 MD05G1191100.v1.1 MD08G1226300.v1.1 MD10G1091000.v1.1 MD10G1091200.v1.1 MD10G1091400.v1.1 MD10G1091600.v1.1 MD10G1091900.v1.1
prunus_persica Prupe.8G120800_v2.0.a1 Prupe.8G121100_v2.0.a1 Prupe.8G121200_v2.0.a1 Prupe.8G121300_v2.0.a1 Prupe.8G121400_v2.0.a1 Prupe.8G121500_v2.0.a1 Prupe.8G121600_v2.0.a1 Prupe.8G121700_v2.0.a1 Prupe.8G121900_v2.0.a1 Prupe.8G122000_v2.0.a1 Prupe.I000800_v2.0.a1
pyrus_communis pycom05g07040 pycom05g17560 pycom05g17680 pycom05g17760 pycom10g07450 pycom10g07470 pycom10g07550
rosa_chinensis RchiOBHm_Chr6g0258271 RchiOBHm_Chr6g0258281 RchiOBHm_Chr6g0258291 RchiOBHm_Chr6g0258311 RchiOBHm_Chr6g0258321 RchiOBHm_Chr6g0258501
rosa_laevigata RLG00000014606 RLG00000014621 RLG00000014622 RLG00000014624 RLG00000014625 RLG00000014627 RLG00000014629 RLG00000014633 RLG00000014635
rosa_multiflora Rmu_co8014592.1_g000001 Rmu_co8366243.1_g000001 Rmu_sc0001663.1_g000004 Rmu_sc0005877.1_g000001 Rmu_sc0005877.1_g000006 Rmu_sc0005877.1_g000007 Rmu_sc0007367.1_g000009 Rmu_sc0007367.1_g000019 Rmu_sc0010616.1_g000022 Rmu_sc0010616.1_g000023 Rmu_ssc0000213.1_g000009
rosa_roxburghii Rroxscaffold_178G00437230 Rroxscaffold_178G00437250 Rroxscaffold_178G00437280 Rroxscaffold_178G00437320 Rroxscaffold_178G00437340 Rroxscaffold_178G00437350 Rroxscaffold_178G00437480 Rroxscaffold_7G00205390 Rroxscaffold_7G00205410 Rroxscaffold_7G00205450 Rroxscaffold_7G00205490 Rroxscaffold_7G00205510 Rroxscaffold_7G00205520 Rroxscaffold_7G00205670 Rroxscaffold_7G00205730
rosa_rugosa Rorug05G0579800 Rorug05G0580500 Rorug05G0580600 Rorug05G0580700 Rorug05G0580900 Rorug05G0581000 Rorug05G0581900
rosa_samantha Rh6CG084800 Rh6CG085100 Rh6CG085200 Rh6CG085400 Rh6CG085500 Rh6CG085600 Rh6CG085700 Rh6CG086900
rosa_wichuraiana Rw6G008300 Rw6G008310 Rw6G008360 Rw6G008370 Rw6G008380 Rw6G008390 Rw6G008430 Rw6G008440 Rw6G008530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 364
AclWI GGATC 2 cut(s) 279, 292
AcoI YGGCCR 1 cut(s) 222
AfaI GTAC 1 cut(s) 182
AgsI TTSAA 2 cut(s) 61, 304
AluBI AGCT 4 cut(s) 27, 154, 214, 218
AluI AGCT 4 cut(s) 27, 154, 214, 218
AlwI GGATC 2 cut(s) 279, 292
AoxI GGCC 1 cut(s) 222
ApeKI GCWGC 2 cut(s) 248, 361
Asp700I GAANNNNTTC 1 cut(s) 316
AsuHPI GGTGA 3 cut(s) 92, 98, 203
AsuII TTCGAA 1 cut(s) 320
AsuNHI GCTAGC 1 cut(s) 214
BamHI GGATCC 1 cut(s) 284
BbvI GCAGC 2 cut(s) 235, 348
BfaI CTAG 1 cut(s) 215
BisI GCNGC 2 cut(s) 249, 362
BlsI GCNGC 2 cut(s) 250, 363
BmiI GGNNCC 1 cut(s) 286
BmrI ACTGGG 1 cut(s) 73
BmsI GCATC 1 cut(s) 184
BmtI GCTAGC 1 cut(s) 218
BmuI ACTGGG 1 cut(s) 73
Bpu14I TTCGAA 1 cut(s) 320
BsaXI ACNNNNNCTCC 2 cut(s) 250, 280
Bse1I ACTGG 2 cut(s) 50, 68
BseGI GGATG 1 cut(s) 175
BseNI ACTGG 2 cut(s) 50, 68
BseXI GCAGC 2 cut(s) 235, 348
BseYI CCCAGC 1 cut(s) 89
BshFI GGCC 1 cut(s) 224
BsnI GGCC 1 cut(s) 224
Bsp119I TTCGAA 1 cut(s) 320
Bsp143I GATC 1 cut(s) 284
BspACI CCGC 1 cut(s) 364
BspANI GGCC 1 cut(s) 224
BspLI GGNNCC 1 cut(s) 286
BspOI GCTAGC 1 cut(s) 218
BspPI GGATC 2 cut(s) 279, 292
BspT104I TTCGAA 1 cut(s) 320
BsrI ACTGG 2 cut(s) 50, 68
BssMI GATC 1 cut(s) 284
Bst6I CTCTTC 1 cut(s) 27
BstBI TTCGAA 1 cut(s) 320
BstC8I GCNNGC 2 cut(s) 51, 216
BstF5I GGATG 1 cut(s) 175
BstKTI GATC 1 cut(s) 287
BstMBI GATC 1 cut(s) 284
BstMWI GCNNNNNNNGC 1 cut(s) 46
BstNSI RCATGY 1 cut(s) 53
BstV1I GCAGC 2 cut(s) 235, 348
BstX2I RGATCY 1 cut(s) 284
BstYI RGATCY 1 cut(s) 284
BsuRI GGCC 1 cut(s) 224
BtsCI GGATG 1 cut(s) 175
Cac8I GCNNGC 2 cut(s) 51, 216
Csp6I GTAC 1 cut(s) 181
CviAII CATG 2 cut(s) 50, 112
CviJI RGCY 8 cut(s) 27, 40, 95, 154, 214, 218, 224, 248
CviKI_1 RGCY 8 cut(s) 27, 40, 95, 154, 214, 218, 224, 248
CviQI GTAC 1 cut(s) 181
DpnI GATC 1 cut(s) 286
DpnII GATC 1 cut(s) 284
EaeI YGGCCR 1 cut(s) 222
Eam1104I CTCTTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 27
FaeI CATG 2 cut(s) 53, 115
FaiI YATR 4 cut(s) 51, 101, 113, 234
FatI CATG 2 cut(s) 49, 111
Fnu4HI GCNGC 2 cut(s) 249, 362
FokI GGATG 1 cut(s) 162
Fsp4HI GCNGC 2 cut(s) 249, 362
FspBI CTAG 1 cut(s) 215
GluI GCNGC 2 cut(s) 249, 362
GsaI CCCAGC 1 cut(s) 93
HaeIII GGCC 1 cut(s) 224
Hin1II CATG 2 cut(s) 53, 115
HinfI GANTC 4 cut(s) 5, 229, 317, 373
HphI GGTGA 3 cut(s) 92, 98, 203
Hpy166II GTNNAC 1 cut(s) 106
Hpy188I TCNGA 2 cut(s) 31, 289
Hpy8I GTNNAC 1 cut(s) 106
HpyAV CCTTC 1 cut(s) 363
HpyCH4V TGCA 2 cut(s) 53, 175
HpyF10VI GCNNNNNNNGC 1 cut(s) 46
Hsp92II CATG 2 cut(s) 53, 115
Kzo9I GATC 1 cut(s) 284
LpnPI CCDG 8 cut(s) 31, 31, 37, 49, 63, 75, 155, 293
Lsp1109I GCAGC 2 cut(s) 235, 348
LweI GCATC 1 cut(s) 184
MaeI CTAG 1 cut(s) 215
MaeIII GTNAC 1 cut(s) 266
MalI GATC 1 cut(s) 286
MboI GATC 1 cut(s) 284
MboII GAAGA 2 cut(s) 44, 206
MflI RGATCY 1 cut(s) 284
MluCI AATT 1 cut(s) 123
MlyI GAGTC 2 cut(s) 14, 238
MnlI CCTC 1 cut(s) 252
MroXI GAANNNNTTC 1 cut(s) 316
MseI TTAA 1 cut(s) 150
MwoI GCNNNNNNNGC 1 cut(s) 46
NdeII GATC 1 cut(s) 284
NheI GCTAGC 1 cut(s) 214
NlaIII CATG 2 cut(s) 53, 115
NlaIV GGNNCC 1 cut(s) 286
NmeAIII GCCGAG 1 cut(s) 250
NspI RCATGY 1 cut(s) 53
NspV TTCGAA 1 cut(s) 320
PaeI GCATGC 1 cut(s) 53
PdmI GAANNNNTTC 1 cut(s) 316
PfeI GAWTC 2 cut(s) 317, 373
PkrI GCNGC 2 cut(s) 250, 363
PleI GAGTC 2 cut(s) 13, 237
PpsI GAGTC 2 cut(s) 13, 237
PspFI CCCAGC 1 cut(s) 89
PspN4I GGNNCC 1 cut(s) 286
PsuI RGATCY 1 cut(s) 284
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
SaqAI TTAA 1 cut(s) 150
SatI GCNGC 2 cut(s) 249, 362
Sau3AI GATC 1 cut(s) 284
SchI GAGTC 2 cut(s) 14, 238
SetI ASST 6 cut(s) 29, 82, 156, 216, 220, 263
SfaNI GCATC 1 cut(s) 184
SfuI TTCGAA 1 cut(s) 320
SphI GCATGC 1 cut(s) 53
Sse9I AATT 1 cut(s) 123
SsiI CCGC 1 cut(s) 364
SspMI CTAG 1 cut(s) 215
TaqI TCGA 1 cut(s) 320
TasI AATT 1 cut(s) 123
TfiI GAWTC 2 cut(s) 317, 373
Tru1I TTAA 1 cut(s) 150
Tru9I TTAA 1 cut(s) 150
TseI GCWGC 2 cut(s) 248, 361
TspGWI ACGGA 1 cut(s) 168
XceI RCATGY 1 cut(s) 53
XmnI GAANNNNTTC 1 cut(s) 316
XspI CTAG 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.