Rorug05G0580900

Carboxylesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000397
Physical Location & Seq
Reverse (-)
77794043 .. 77803088
9046 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0580900.1

Sequence Viewer

Length: 1050 bp
ATGGTTTATCCTGTTTTTTACAAGGTAGATCCGTCGGATGTGCGACATCGGAACGGTAGCTTTGGTGAGGCACTTGCTCATCATGCATGCAGATTCAAGGATAACTTGAAGAAGGTGGTGGAGTGGAACAAAGCTCTTACATCAGTAGGAAACTTGTCTGGGTGGCATTTCTTGGACGGAGGTCATGAATCTAAGTTCGTTGATGCAATTGTCGAAGAGATTTCACGGAAGCTATTAGACTACACATATTTAAGTGTGGCAAAGTACCCAGTTGGAATAAAGTCTCGTCTGGAGAGTATGCTTAATCTTTTATGTATTGGGAAAAATGATGTCCGCATAGTAGGGATATGGGGAGTTGGTGGAATAGGAAAGACAACAATTGCTAAAGCAGTTAACAATTCAATTGCCTATAAATTTGAAGGTAATTGTTTTTTGGCAAATGTGAGAGAAGAGTCAATGCGATCTGGAGGCCTTGTCCGTCTACAAAAGACTCTTCTTCGCAAGATTCTAAGGGACGACACATTGAAGGTGCCTAGTGTTGATGAAGGAATAACCATGATAAAAGAAAGGCTATGTCATAAAAGAGTTCTTTTAGTTCTCGATGATGTGAATCAATTGAACCAGTTAAACAAAATAGCAGGAAATCCTAATTGGTTTGGTTCAGGCAGTAGAATAATTGTTACAACAAGAGATAAGCATTGCTTAACTGCTTGTGATGTCAATGAAATATATGAGCCTCAGCTCTATTTGAACAATGCAAACTACTTAGTAGCAACAGAGAAAACCTCTCCGCCAAAGCTAAGTACATTAAGGAAGGGTCAGCAAATATCATTGAACAGACTTTCAAAACCTTCAAACCAAGGCCTTGAAGAGTTTCAAAACGAGGATAGGATGCGTATGAAGACCAATGTTGTGATAAGGGTTCTCTCATGCAATGTAATTCGGAATCAAGAGTCCTTCAGTCATGGAGTACAAAGCTCTGGGTTAAATGTAGTGGATGAAGATATTGGAGATGATGAAACCAAGTTTTGTGCCTCTATAGTCATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

349

Amino Acids

39.17

Weight (kDa)

8.98

Isoelectric Point (pI)

31.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 2 - 81 2.9e-15 TIR domain
NB-ARC PF00931 97 - 235 8.6e-19 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000397)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48690 AT3G48700
fragaria_vesca FvH4_2g06400 FvH4_2g06430 FvH4_2g06450 FvH4_2g06480 FvH4_2g06560
malus_domestica MD05G1076400.v1.1 MD05G1076500.v1.1 MD05G1078900.v1.1 MD05G1191000.v1.1 MD05G1191100.v1.1 MD08G1226300.v1.1 MD10G1091000.v1.1 MD10G1091200.v1.1 MD10G1091400.v1.1 MD10G1091600.v1.1 MD10G1091900.v1.1
prunus_persica Prupe.8G120800_v2.0.a1 Prupe.8G121100_v2.0.a1 Prupe.8G121200_v2.0.a1 Prupe.8G121300_v2.0.a1 Prupe.8G121400_v2.0.a1 Prupe.8G121500_v2.0.a1 Prupe.8G121600_v2.0.a1 Prupe.8G121700_v2.0.a1 Prupe.8G121900_v2.0.a1 Prupe.8G122000_v2.0.a1 Prupe.I000800_v2.0.a1
pyrus_communis pycom05g07040 pycom05g17560 pycom05g17680 pycom05g17760 pycom10g07450 pycom10g07470 pycom10g07550
rosa_chinensis RchiOBHm_Chr6g0258271 RchiOBHm_Chr6g0258281 RchiOBHm_Chr6g0258291 RchiOBHm_Chr6g0258311 RchiOBHm_Chr6g0258321 RchiOBHm_Chr6g0258501
rosa_laevigata RLG00000014606 RLG00000014621 RLG00000014622 RLG00000014624 RLG00000014625 RLG00000014627 RLG00000014629 RLG00000014633 RLG00000014635
rosa_multiflora Rmu_co8014592.1_g000001 Rmu_co8366243.1_g000001 Rmu_sc0001663.1_g000004 Rmu_sc0005877.1_g000001 Rmu_sc0005877.1_g000006 Rmu_sc0005877.1_g000007 Rmu_sc0007367.1_g000009 Rmu_sc0007367.1_g000019 Rmu_sc0010616.1_g000022 Rmu_sc0010616.1_g000023 Rmu_ssc0000213.1_g000009
rosa_roxburghii Rroxscaffold_178G00437230 Rroxscaffold_178G00437250 Rroxscaffold_178G00437280 Rroxscaffold_178G00437320 Rroxscaffold_178G00437340 Rroxscaffold_178G00437350 Rroxscaffold_178G00437480 Rroxscaffold_7G00205390 Rroxscaffold_7G00205410 Rroxscaffold_7G00205450 Rroxscaffold_7G00205490 Rroxscaffold_7G00205510 Rroxscaffold_7G00205520 Rroxscaffold_7G00205670 Rroxscaffold_7G00205730
rosa_rugosa Rorug05G0579800 Rorug05G0580500 Rorug05G0580600 Rorug05G0580700 Rorug05G0580900 Rorug05G0581000 Rorug05G0581900
rosa_samantha Rh6CG084800 Rh6CG085100 Rh6CG085200 Rh6CG085400 Rh6CG085500 Rh6CG085600 Rh6CG085700 Rh6CG086900
rosa_wichuraiana Rw6G008300 Rw6G008310 Rw6G008360 Rw6G008370 Rw6G008380 Rw6G008390 Rw6G008430 Rw6G008440 Rw6G008530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 529
AccI GTMKAC 1 cut(s) 481
AciI CCGC 2 cut(s) 334, 791
AclWI GGATC 1 cut(s) 23
AcsI RAATTY 1 cut(s) 413
AcuI CTGAAG 1 cut(s) 943
AfaI GTAC 3 cut(s) 266, 805, 972
AjuI GAANNNNNNNTTGG 2 cut(s) 634, 666
AluBI AGCT 6 cut(s) 60, 134, 232, 742, 799, 978
AluI AGCT 6 cut(s) 60, 134, 232, 742, 799, 978
Alw26I GTCTC 1 cut(s) 288
AlwI GGATC 1 cut(s) 23
AoxI GGCC 2 cut(s) 469, 862
ApoI RAATTY 1 cut(s) 413
Asp700I GAANNNNTTC 1 cut(s) 873
AsuHPI GGTGA 1 cut(s) 77
BanI GGYRCC 1 cut(s) 529
BbsI GAAGAC 1 cut(s) 908
BbvCI CCTCAGC 1 cut(s) 738
BcoDI GTCTC 1 cut(s) 288
BfaI CTAG 1 cut(s) 534
BfmI CTRYAG 1 cut(s) 1038
BmiI GGNNCC 1 cut(s) 531
BmrI ACTGGG 1 cut(s) 263
BmsI GCATC 2 cut(s) 193, 882
BmuI ACTGGG 1 cut(s) 263
BoxI GACNNNNGTC 1 cut(s) 180
BpiI GAAGAC 1 cut(s) 908
BplI GAGNNNNNCTC 2 cut(s) 770, 802
BpmI CTGGAG 2 cut(s) 311, 486
Bpu10I CCTNAGC 1 cut(s) 738
BsaBI GATNNNNATC 1 cut(s) 609
BsaJI CCNNGG 1 cut(s) 859
BsaXI ACNNNNNCTCC 2 cut(s) 459, 489
Bse1I ACTGG 2 cut(s) 269, 622
Bse3DI GCAATG 2 cut(s) 697, 940
Bse8I GATNNNNATC 1 cut(s) 609
BseDI CCNNGG 1 cut(s) 859
BseGI GGATG 3 cut(s) 43, 897, 1003
BseJI GATNNNNATC 1 cut(s) 609
BseMI GCAATG 2 cut(s) 697, 940
BseMII CTCAG 1 cut(s) 752
BseNI ACTGG 2 cut(s) 269, 622
BshFI GGCC 2 cut(s) 471, 864
BshNI GGYRCC 1 cut(s) 529
BslFI GGGAC 1 cut(s) 527
BsmAI GTCTC 1 cut(s) 288
BsmFI GGGAC 1 cut(s) 527
BsnI GGCC 2 cut(s) 471, 864
Bsp143I GATC 2 cut(s) 28, 461
BspACI CCGC 2 cut(s) 334, 791
BspANI GGCC 2 cut(s) 471, 864
BspCNI CTCAG 1 cut(s) 751
BspHI TCATGA 1 cut(s) 184
BspLI GGNNCC 1 cut(s) 531
BspPI GGATC 1 cut(s) 23
BspT107I GGYRCC 1 cut(s) 529
BsrDI GCAATG 2 cut(s) 697, 940
BsrI ACTGG 2 cut(s) 269, 622
BssECI CCNNGG 1 cut(s) 859
BssMI GATC 2 cut(s) 28, 461
BssT1I CCWWGG 1 cut(s) 859
Bst4CI ACNGT 1 cut(s) 56
Bst6I CTCTTC 4 cut(s) 210, 444, 498, 864
BstC8I GCNNGC 1 cut(s) 88
BstDEI CTNAG 5 cut(s) 192, 509, 738, 766, 800
BstF5I GGATG 3 cut(s) 43, 897, 1003
BstKTI GATC 2 cut(s) 31, 464
BstMAI GTCTC 1 cut(s) 288
BstMBI GATC 2 cut(s) 28, 461
BstMWI GCNNNNNNNGC 1 cut(s) 83
BstNSI RCATGY 1 cut(s) 90
BstPAI GACNNNNGTC 1 cut(s) 180
BstSFI CTRYAG 1 cut(s) 1038
BstV2I GAAGAC 1 cut(s) 908
BstX2I RGATCY 1 cut(s) 28
BstYI RGATCY 1 cut(s) 28
BsuRI GGCC 2 cut(s) 471, 864
BtsCI GGATG 3 cut(s) 43, 897, 1003
Cac8I GCNNGC 1 cut(s) 88
CciI TCATGA 1 cut(s) 184
Csp6I GTAC 3 cut(s) 265, 804, 971
CviAII CATG 6 cut(s) 83, 87, 185, 556, 930, 965
CviQI GTAC 3 cut(s) 265, 804, 971
DdeI CTNAG 5 cut(s) 192, 509, 738, 766, 800
DpnI GATC 2 cut(s) 30, 463
DpnII GATC 2 cut(s) 28, 461
Eam1104I CTCTTC 4 cut(s) 210, 444, 498, 864
EarI CTCTTC 4 cut(s) 210, 444, 498, 864
EciI GGCGGA 1 cut(s) 780
Eco130I CCWWGG 1 cut(s) 859
Eco147I AGGCCT 2 cut(s) 471, 864
Eco57I CTGAAG 1 cut(s) 943
EcoT14I CCWWGG 1 cut(s) 859
EcoT22I ATGCAT 1 cut(s) 88
ErhI CCWWGG 1 cut(s) 859
FaeI CATG 6 cut(s) 86, 90, 188, 559, 933, 968
FalI AAGNNNNNCTT 4 cut(s) 89, 121, 686, 718
FaqI GGGAC 1 cut(s) 527
FatI CATG 6 cut(s) 82, 86, 184, 555, 929, 964
FblI GTMKAC 1 cut(s) 481
FokI GGATG 3 cut(s) 50, 904, 1010
FspBI CTAG 1 cut(s) 534
GsuI CTGGAG 2 cut(s) 311, 486
HaeIII GGCC 2 cut(s) 471, 864
Hin1II CATG 6 cut(s) 86, 90, 188, 559, 933, 968
HincII GTYRAC 1 cut(s) 394
HindII GTYRAC 1 cut(s) 394
HinfI GANTC 8 cut(s) 93, 188, 452, 490, 505, 610, 946, 953
HpaI GTTAAC 1 cut(s) 394
HphI GGTGA 1 cut(s) 77
Hpy166II GTNNAC 2 cut(s) 394, 482
Hpy188I TCNGA 3 cut(s) 37, 51, 945
Hpy188III TCNNGA 5 cut(s) 185, 290, 465, 599, 950
Hpy8I GTNNAC 2 cut(s) 394, 482
Hpy99I CGWCG 1 cut(s) 37
HpyAV CCTTC 7 cut(s) 106, 413, 520, 539, 808, 861, 967
HpyCH4III ACNGT 1 cut(s) 56
HpyCH4V TGCA 5 cut(s) 86, 90, 206, 758, 933
HpyF10VI GCNNNNNNNGC 1 cut(s) 83
HpyF3I CTNAG 5 cut(s) 192, 509, 738, 766, 800
Hsp92II CATG 6 cut(s) 86, 90, 188, 559, 933, 968
KspAI GTTAAC 1 cut(s) 394
Kzo9I GATC 2 cut(s) 28, 461
LpnPI CCDG 9 cut(s) 24, 144, 275, 282, 450, 624, 635, 648, 966
LweI GCATC 2 cut(s) 193, 882
MaeI CTAG 1 cut(s) 534
MaeIII GTNAC 1 cut(s) 679
MalI GATC 2 cut(s) 30, 463
MboI GATC 2 cut(s) 28, 461
MboII GAAGA 8 cut(s) 121, 227, 461, 485, 488, 881, 913, 1013
MfeI CAATTG 4 cut(s) 207, 378, 402, 614
MflI RGATCY 1 cut(s) 28
MlyI GAGTC 3 cut(s) 461, 484, 962
MmeI TCCRAC 2 cut(s) 15, 253
MnlI CCTC 7 cut(s) 61, 173, 461, 747, 796, 877, 1045
Mph1103I ATGCAT 1 cut(s) 88
MroXI GAANNNNTTC 1 cut(s) 873
MseI TTAA 7 cut(s) 251, 303, 393, 626, 704, 809, 986
MunI CAATTG 4 cut(s) 207, 378, 402, 614
MwoI GCNNNNNNNGC 1 cut(s) 83
NdeII GATC 2 cut(s) 28, 461
NlaIII CATG 6 cut(s) 86, 90, 188, 559, 933, 968
NlaIV GGNNCC 1 cut(s) 531
NsiI ATGCAT 1 cut(s) 88
NspI RCATGY 1 cut(s) 90
PaeI GCATGC 1 cut(s) 90
PagI TCATGA 1 cut(s) 184
PceI AGGCCT 2 cut(s) 471, 864
PdmI GAANNNNTTC 1 cut(s) 873
PfeI GAWTC 5 cut(s) 93, 188, 505, 610, 946
PleI GAGTC 3 cut(s) 460, 484, 961
PpsI GAGTC 3 cut(s) 460, 484, 961
PshAI GACNNNNGTC 1 cut(s) 180
PspN4I GGNNCC 1 cut(s) 531
PsuI RGATCY 1 cut(s) 28
RsaI GTAC 3 cut(s) 266, 805, 972
RsaNI GTAC 3 cut(s) 265, 804, 971
SaqAI TTAA 7 cut(s) 251, 303, 393, 626, 704, 809, 986
Sau3AI GATC 2 cut(s) 28, 461
SchI GAGTC 3 cut(s) 461, 484, 962
SfaNI GCATC 2 cut(s) 193, 882
SfcI CTRYAG 1 cut(s) 1038
SphI GCATGC 1 cut(s) 90
SseBI AGGCCT 2 cut(s) 471, 864
SsiI CCGC 2 cut(s) 334, 791
SspMI CTAG 1 cut(s) 534
StuI AGGCCT 2 cut(s) 471, 864
StyI CCWWGG 1 cut(s) 859
TaaI ACNGT 1 cut(s) 56
TaqI TCGA 2 cut(s) 213, 600
TatI WGTACW 2 cut(s) 803, 970
TfiI GAWTC 5 cut(s) 93, 188, 505, 610, 946
Tru1I TTAA 7 cut(s) 251, 303, 393, 626, 704, 809, 986
Tru9I TTAA 7 cut(s) 251, 303, 393, 626, 704, 809, 986
TspDTI ATGAA 6 cut(s) 201, 558, 738, 914, 1014, 1032
TspGWI ACGGA 4 cut(s) 21, 192, 241, 467
XapI RAATTY 1 cut(s) 413
XceI RCATGY 1 cut(s) 90
XmiI GTMKAC 1 cut(s) 481
XmnI GAANNNNTTC 1 cut(s) 873
XspI CTAG 1 cut(s) 534
Zsp2I ATGCAT 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.