Rmu_sc0001663.1_g000004

Carboxylesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001663.1
OG0000397
Physical Location & Seq
Reverse (-)
24917 .. 25174
258 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001663.1_g000004.1.cds

Sequence Viewer

Length: 258 bp
ctgaaagtgtacccgggaaaggatccgaaactggggagctttggagctgggagagtgttggtgtttgttgcggagaaggattttctgaaggacaggggatggagttattatgaggcgttgaagaagagtgggtggggtggagtggtggagattgaggagactgaaggagaagatcatgtgtttcatttgttcgatccgagctgtgagaaggctgtgagcttggtgaagaaggtagctgctttcatgaatcaggagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0009056 GO:0016787 GO:0016788 GO:0044424 GO:0044444 GO:0044464 GO:0052689
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

85

Amino Acids

9.51

Weight (kDa)

5.69

Isoelectric Point (pI)

26.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000397)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48690 AT3G48700
fragaria_vesca FvH4_2g06400 FvH4_2g06430 FvH4_2g06450 FvH4_2g06480 FvH4_2g06560
malus_domestica MD05G1076400.v1.1 MD05G1076500.v1.1 MD05G1078900.v1.1 MD05G1191000.v1.1 MD05G1191100.v1.1 MD08G1226300.v1.1 MD10G1091000.v1.1 MD10G1091200.v1.1 MD10G1091400.v1.1 MD10G1091600.v1.1 MD10G1091900.v1.1
prunus_persica Prupe.8G120800_v2.0.a1 Prupe.8G121100_v2.0.a1 Prupe.8G121200_v2.0.a1 Prupe.8G121300_v2.0.a1 Prupe.8G121400_v2.0.a1 Prupe.8G121500_v2.0.a1 Prupe.8G121600_v2.0.a1 Prupe.8G121700_v2.0.a1 Prupe.8G121900_v2.0.a1 Prupe.8G122000_v2.0.a1 Prupe.I000800_v2.0.a1
pyrus_communis pycom05g07040 pycom05g17560 pycom05g17680 pycom05g17760 pycom10g07450 pycom10g07470 pycom10g07550
rosa_chinensis RchiOBHm_Chr6g0258271 RchiOBHm_Chr6g0258281 RchiOBHm_Chr6g0258291 RchiOBHm_Chr6g0258311 RchiOBHm_Chr6g0258321 RchiOBHm_Chr6g0258501
rosa_laevigata RLG00000014606 RLG00000014621 RLG00000014622 RLG00000014624 RLG00000014625 RLG00000014627 RLG00000014629 RLG00000014633 RLG00000014635
rosa_multiflora Rmu_co8014592.1_g000001 Rmu_co8366243.1_g000001 Rmu_sc0001663.1_g000004 Rmu_sc0005877.1_g000001 Rmu_sc0005877.1_g000006 Rmu_sc0005877.1_g000007 Rmu_sc0007367.1_g000009 Rmu_sc0007367.1_g000019 Rmu_sc0010616.1_g000022 Rmu_sc0010616.1_g000023 Rmu_ssc0000213.1_g000009
rosa_roxburghii Rroxscaffold_178G00437230 Rroxscaffold_178G00437250 Rroxscaffold_178G00437280 Rroxscaffold_178G00437320 Rroxscaffold_178G00437340 Rroxscaffold_178G00437350 Rroxscaffold_178G00437480 Rroxscaffold_7G00205390 Rroxscaffold_7G00205410 Rroxscaffold_7G00205450 Rroxscaffold_7G00205490 Rroxscaffold_7G00205510 Rroxscaffold_7G00205520 Rroxscaffold_7G00205670 Rroxscaffold_7G00205730
rosa_rugosa Rorug05G0579800 Rorug05G0580500 Rorug05G0580600 Rorug05G0580700 Rorug05G0580900 Rorug05G0581000 Rorug05G0581900
rosa_samantha Rh6CG084800 Rh6CG085100 Rh6CG085200 Rh6CG085400 Rh6CG085500 Rh6CG085600 Rh6CG085700 Rh6CG086900
rosa_wichuraiana Rw6G008300 Rw6G008310 Rw6G008360 Rw6G008370 Rw6G008380 Rw6G008390 Rw6G008430 Rw6G008440 Rw6G008530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 71
AclWI GGATC 3 cut(s) 17, 30, 188
AcuI CTGAAG 2 cut(s) 107, 183
AfaI GTAC 1 cut(s) 11
AfiI CCNNNNNNNGG 2 cut(s) 19, 32
AgsI TTSAA 1 cut(s) 121
AluBI AGCT 5 cut(s) 39, 47, 201, 219, 236
AluI AGCT 5 cut(s) 39, 47, 201, 219, 236
Alw26I GTCTC 1 cut(s) 152
AlwI GGATC 3 cut(s) 17, 30, 188
Ama87I CYCGRG 1 cut(s) 13
ApeKI GCWGC 1 cut(s) 236
AsuC2I CCSGG 2 cut(s) 14, 15
AsuHPI GGTGA 1 cut(s) 235
AvaI CYCGRG 1 cut(s) 13
BamHI GGATCC 1 cut(s) 22
BbvI GCAGC 1 cut(s) 223
BccI CCATC 1 cut(s) 93
BcnI CCSGG 2 cut(s) 14, 15
BcoDI GTCTC 1 cut(s) 152
BisI GCNGC 1 cut(s) 237
BlsI GCNGC 1 cut(s) 238
Bme1390I CCNGG 2 cut(s) 14, 15
BmeT110I CYCGRG 1 cut(s) 13
BmiI GGNNCC 1 cut(s) 24
BmrFI CCNGG 2 cut(s) 14, 15
BmrI ACTGGG 1 cut(s) 41
BmuI ACTGGG 1 cut(s) 41
BpuMI CCSGG 2 cut(s) 14, 15
BsaJI CCNNGG 1 cut(s) 13
Bsc4I CCNNNNNNNGG 2 cut(s) 19, 32
Bse1I ACTGG 1 cut(s) 36
BseDI CCNNGG 1 cut(s) 13
BseGI GGATG 1 cut(s) 104
BseLI CCNNNNNNNGG 2 cut(s) 19, 32
BseNI ACTGG 1 cut(s) 36
BseRI GAGGAG 1 cut(s) 170
BseXI GCAGC 1 cut(s) 223
BseYI CCCAGC 1 cut(s) 47
BsiHKCI CYCGRG 1 cut(s) 13
BsiSI CCGG 1 cut(s) 14
BslI CCNNNNNNNGG 2 cut(s) 19, 32
BsmAI GTCTC 1 cut(s) 152
BsoBI CYCGRG 1 cut(s) 13
Bsp143I GATC 3 cut(s) 22, 172, 193
BspACI CCGC 1 cut(s) 71
BspHI TCATGA 1 cut(s) 243
BspLI GGNNCC 1 cut(s) 24
BspPI GGATC 3 cut(s) 17, 30, 188
BsrI ACTGG 1 cut(s) 36
BssECI CCNNGG 1 cut(s) 13
BssMI GATC 3 cut(s) 22, 172, 193
Bst6I CTCTTC 1 cut(s) 119
BstF5I GGATG 1 cut(s) 104
BstKTI GATC 3 cut(s) 25, 175, 196
BstMAI GTCTC 1 cut(s) 152
BstMBI GATC 3 cut(s) 22, 172, 193
BstSCI CCNGG 2 cut(s) 12, 13
BstV1I GCAGC 1 cut(s) 223
BstX2I RGATCY 1 cut(s) 22
BstYI RGATCY 1 cut(s) 22
BtsCI GGATG 1 cut(s) 104
CciI TCATGA 1 cut(s) 243
Cfr9I CCCGGG 1 cut(s) 13
Csp6I GTAC 1 cut(s) 10
CviAII CATG 2 cut(s) 176, 244
CviJI RGCY 6 cut(s) 39, 47, 201, 212, 219, 236
CviKI_1 RGCY 6 cut(s) 39, 47, 201, 212, 219, 236
CviQI GTAC 1 cut(s) 10
DpnI GATC 3 cut(s) 24, 174, 195
DpnII GATC 3 cut(s) 22, 172, 193
Eam1104I CTCTTC 1 cut(s) 119
EarI CTCTTC 1 cut(s) 119
Eco57I CTGAAG 2 cut(s) 107, 183
Eco88I CYCGRG 1 cut(s) 13
FaeI CATG 2 cut(s) 179, 247
FaiI YATR 3 cut(s) 111, 177, 245
FatI CATG 2 cut(s) 175, 243
Fnu4HI GCNGC 1 cut(s) 237
FokI GGATG 1 cut(s) 111
Fsp4HI GCNGC 1 cut(s) 237
GluI GCNGC 1 cut(s) 237
GsaI CCCAGC 1 cut(s) 51
HapII CCGG 1 cut(s) 14
Hin1II CATG 2 cut(s) 179, 247
HinfI GANTC 1 cut(s) 247
HpaII CCGG 1 cut(s) 14
HphI GGTGA 1 cut(s) 235
Hpy166II GTNNAC 1 cut(s) 10
Hpy188I TCNGA 3 cut(s) 27, 87, 198
Hpy188III TCNNGA 2 cut(s) 244, 251
Hpy8I GTNNAC 1 cut(s) 10
HpyAV CCTTC 5 cut(s) 70, 82, 158, 202, 223
Hsp92II CATG 2 cut(s) 179, 247
Kzo9I GATC 3 cut(s) 22, 172, 193
LmnI GCTCC 2 cut(s) 36, 44
LpnPI CCDG 5 cut(s) 17, 27, 33, 79, 236
Lsp1109I GCAGC 1 cut(s) 223
MalI GATC 3 cut(s) 24, 174, 195
MboI GATC 3 cut(s) 22, 172, 193
MboII GAAGA 4 cut(s) 133, 136, 182, 238
MflI RGATCY 1 cut(s) 22
MnlI CCTC 2 cut(s) 106, 148
MspI CCGG 1 cut(s) 14
MspR9I CCNGG 2 cut(s) 14, 15
NciI CCSGG 2 cut(s) 14, 15
NdeII GATC 3 cut(s) 22, 172, 193
NlaIII CATG 2 cut(s) 179, 247
NlaIV GGNNCC 1 cut(s) 24
PagI TCATGA 1 cut(s) 243
PfeI GAWTC 1 cut(s) 247
PkrI GCNGC 1 cut(s) 238
PspFI CCCAGC 1 cut(s) 47
PspN4I GGNNCC 1 cut(s) 24
PsuI RGATCY 1 cut(s) 22
RsaI GTAC 1 cut(s) 11
RsaNI GTAC 1 cut(s) 10
SatI GCNGC 1 cut(s) 237
Sau3AI GATC 3 cut(s) 22, 172, 193
ScrFI CCNGG 2 cut(s) 14, 15
SetI ASST 6 cut(s) 41, 49, 203, 221, 234, 238
SgeI CNNG 9 cut(s) 25, 26, 27, 44, 60, 106, 188, 210, 232
SmaI CCCGGG 1 cut(s) 15
SsiI CCGC 1 cut(s) 71
StyD4I CCNGG 2 cut(s) 12, 13
TaqI TCGA 1 cut(s) 192
TfiI GAWTC 1 cut(s) 247
TseI GCWGC 1 cut(s) 236
TspDTI ATGAA 2 cut(s) 173, 232
TspMI CCCGGG 1 cut(s) 13
XmaI CCCGGG 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.