RLG00000014629

Carboxylesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000397
Physical Location & Seq
Reverse (-)
55560427 .. 55561386
960 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014629

Sequence Viewer

Length: 954 bp
ATGAGCGACGAACTAGCCCATGATTTCTTTCCCATCATCAAAGTATATAAAGACGGTCGAGTCGACCGACTCTGGGGCACATCCACACTCCCTGCATCCTTCGATCCCCAAACCGGTGTTCAATCCAAAGACGTCGTCATCTCAACCGCACCACCCGTCTCTGTAAGGCTTTACATTCCCAAATCCACCACAACCGAGTCAGCCGAGTCAACCCGGAAGCTCCCTCTTCTGGTTTACTTTCACGGCGGTGGCTTCTGCAATGGAAGTGCTTTCTCTCCCACTTATCACAACTACCTCAACTCTTTAGTCTCTGAAGCCAATGTCGTAGCTGTTTCTGTTGACTATAGGTTGGTGCCGGAGCACCCTCTTCCGGCTGCCTATGAAGATTCATGGGCCACTCTCAAATGGGTGGAGTCCCATTTCGCGGGAAACGGCCCGGAAGACTGGCTGAACCGGCATGCAGATTTGAACCGGGTTTTCTTTTCAGGTGATAGCGCTGGGGCTAACATAGCCCACCACATGGGTTTGAGAGTTGGGTCTGAGAAGTTGGTGGGTTTTAAGCTGAATGGGATTGTTCTGGTGCATCCATACTTTTGGGGTGAAGAACCAATAGGGGGAGAGCTAGCTGTGGCTGAGAGTCATAGAAAGATGTTGGCTGCTTTGTGGAGGTTTTGTTACCCTTTGACTAGTGGATCCGATGACCCGGTTCTCAATCCGGGTAAGGATCCGAAGTTGGGGGAATTGGGTTGTGAGAAAGTGTTGGTCTGTGTTGCGGAGAAGGATTCGTTGAAAGATAGGGGGTGGTATTACAGTGAGGTGTTGAAGAAGAGTGGATGGAATGGAGTGGTGGAGGTTTTGGAAGCAAAGGAGGAGCAGCATGTGTTCCATTTGATCAATCCTAATTGTGACAATGCTGTGACCATGCTCAAGAAGTTAGTTTCTTTCATGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

318

Amino Acids

35.11

Weight (kDa)

5.84

Isoelectric Point (pI)

28.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COesterase PF00135 57 - 173 3.3e-08 Carboxylesterase family
BD-FAE PF20434 69 - 182 1.9e-12 BD-FAE
Abhydrolase_3 PF07859 77 - 296 2.8e-53 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000397)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48690 AT3G48700
fragaria_vesca FvH4_2g06400 FvH4_2g06430 FvH4_2g06450 FvH4_2g06480 FvH4_2g06560
malus_domestica MD05G1076400.v1.1 MD05G1076500.v1.1 MD05G1078900.v1.1 MD05G1191000.v1.1 MD05G1191100.v1.1 MD08G1226300.v1.1 MD10G1091000.v1.1 MD10G1091200.v1.1 MD10G1091400.v1.1 MD10G1091600.v1.1 MD10G1091900.v1.1
prunus_persica Prupe.8G120800_v2.0.a1 Prupe.8G121100_v2.0.a1 Prupe.8G121200_v2.0.a1 Prupe.8G121300_v2.0.a1 Prupe.8G121400_v2.0.a1 Prupe.8G121500_v2.0.a1 Prupe.8G121600_v2.0.a1 Prupe.8G121700_v2.0.a1 Prupe.8G121900_v2.0.a1 Prupe.8G122000_v2.0.a1 Prupe.I000800_v2.0.a1
pyrus_communis pycom05g07040 pycom05g17560 pycom05g17680 pycom05g17760 pycom10g07450 pycom10g07470 pycom10g07550
rosa_chinensis RchiOBHm_Chr6g0258271 RchiOBHm_Chr6g0258281 RchiOBHm_Chr6g0258291 RchiOBHm_Chr6g0258311 RchiOBHm_Chr6g0258321 RchiOBHm_Chr6g0258501
rosa_laevigata RLG00000014606 RLG00000014621 RLG00000014622 RLG00000014624 RLG00000014625 RLG00000014627 RLG00000014629 RLG00000014633 RLG00000014635
rosa_multiflora Rmu_co8014592.1_g000001 Rmu_co8366243.1_g000001 Rmu_sc0001663.1_g000004 Rmu_sc0005877.1_g000001 Rmu_sc0005877.1_g000006 Rmu_sc0005877.1_g000007 Rmu_sc0007367.1_g000009 Rmu_sc0007367.1_g000019 Rmu_sc0010616.1_g000022 Rmu_sc0010616.1_g000023 Rmu_ssc0000213.1_g000009
rosa_roxburghii Rroxscaffold_178G00437230 Rroxscaffold_178G00437250 Rroxscaffold_178G00437280 Rroxscaffold_178G00437320 Rroxscaffold_178G00437340 Rroxscaffold_178G00437350 Rroxscaffold_178G00437480 Rroxscaffold_7G00205390 Rroxscaffold_7G00205410 Rroxscaffold_7G00205450 Rroxscaffold_7G00205490 Rroxscaffold_7G00205510 Rroxscaffold_7G00205520 Rroxscaffold_7G00205670 Rroxscaffold_7G00205730
rosa_rugosa Rorug05G0579800 Rorug05G0580500 Rorug05G0580600 Rorug05G0580700 Rorug05G0580900 Rorug05G0581000 Rorug05G0581900
rosa_samantha Rh6CG084800 Rh6CG085100 Rh6CG085200 Rh6CG085400 Rh6CG085500 Rh6CG085600 Rh6CG085700 Rh6CG086900
rosa_wichuraiana Rw6G008300 Rw6G008310 Rw6G008360 Rw6G008370 Rw6G008380 Rw6G008390 Rw6G008430 Rw6G008440 Rw6G008530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 59
AatII GACGTC 1 cut(s) 135
AccB1I GGYRCC 1 cut(s) 352
AccB7I CCANNNNNTGG 1 cut(s) 520
AccI GTMKAC 1 cut(s) 63
AccII CGCG 1 cut(s) 425
AciI CCGC 4 cut(s) 147, 246, 425, 773
AclWI GGATC 5 cut(s) 98, 687, 700, 719, 732
AcuI CTGAAG 1 cut(s) 333
AcyI GRCGYC 1 cut(s) 132
AfeI AGCGCT 1 cut(s) 496
AfiI CCNNNNNNNGG 8 cut(s) 73, 113, 229, 370, 424, 520, 614, 734
AgeI ACCGGT 1 cut(s) 113
AgsI TTSAA 4 cut(s) 122, 469, 790, 823
AhlI ACTAGT 1 cut(s) 686
AjuI GAANNNNNNNTTGG 2 cut(s) 102, 134
AleI CACNNNNGTG 1 cut(s) 246
AluBI AGCT 5 cut(s) 220, 329, 562, 622, 626
AluI AGCT 5 cut(s) 220, 329, 562, 622, 626
Alw21I GWGCWC 1 cut(s) 363
Alw26I GTCTC 2 cut(s) 163, 313
AlwI GGATC 5 cut(s) 98, 687, 700, 719, 732
Aor51HI AGCGCT 1 cut(s) 496
AoxI GGCC 2 cut(s) 393, 433
ApeKI GCWGC 3 cut(s) 374, 656, 874
ArsI GACNNNNNNTTYG 2 cut(s) 120, 152
AsiGI ACCGGT 1 cut(s) 113
AspLEI GCGC 1 cut(s) 497
AspS9I GGNCC 2 cut(s) 393, 434
AsuC2I CCSGG 5 cut(s) 214, 437, 473, 704, 717
AsuHPI GGTGA 2 cut(s) 500, 611
AsuNHI GCTAGC 1 cut(s) 622
BaeGI GKGCMC 1 cut(s) 80
BamHI GGATCC 2 cut(s) 692, 724
BanI GGYRCC 1 cut(s) 352
BbsI GAAGAC 1 cut(s) 447
Bbv12I GWGCWC 1 cut(s) 363
BbvI GCAGC 3 cut(s) 361, 643, 886
BccI CCATC 2 cut(s) 41, 828
BceAI ACGGC 2 cut(s) 259, 448
BclI TGATCA 1 cut(s) 891
BcnI CCSGG 5 cut(s) 214, 437, 473, 704, 717
BcoDI GTCTC 2 cut(s) 163, 313
BcuI ACTAGT 1 cut(s) 686
BfaI CTAG 3 cut(s) 14, 623, 687
BfmI CTRYAG 1 cut(s) 343
BfoI RGCGCY 1 cut(s) 498
BisI GCNGC 3 cut(s) 375, 657, 875
BlsI GCNGC 3 cut(s) 376, 658, 876
Bme1390I CCNGG 5 cut(s) 214, 437, 473, 704, 717
BmgT120I GGNCC 2 cut(s) 393, 434
BmiI GGNNCC 3 cut(s) 354, 694, 726
BmrFI CCNGG 5 cut(s) 214, 437, 473, 704, 717
BmsI GCATC 2 cut(s) 104, 592
BmtI GCTAGC 1 cut(s) 626
BpiI GAAGAC 1 cut(s) 447
BpuEI CTTGAG 1 cut(s) 911
BpuMI CCSGG 5 cut(s) 214, 437, 473, 704, 717
BsaHI GRCGYC 1 cut(s) 132
BsaWI WCCGGW 1 cut(s) 113
BsaXI ACNNNNNCTCC 2 cut(s) 658, 688
Bsc4I CCNNNNNNNGG 8 cut(s) 73, 113, 229, 370, 424, 520, 614, 734
Bse118I RCCGGY 2 cut(s) 113, 453
Bse1I ACTGG 1 cut(s) 449
Bse3DI GCAATG 1 cut(s) 265
BseGI GGATG 4 cut(s) 80, 95, 583, 839
BseLI CCNNNNNNNGG 8 cut(s) 73, 113, 229, 370, 424, 520, 614, 734
BseMI GCAATG 1 cut(s) 265
BseMII CTCAG 2 cut(s) 531, 624
BseNI ACTGG 1 cut(s) 449
BseRI GAGGAG 1 cut(s) 884
BseSI GKGCMC 1 cut(s) 80
BseXI GCAGC 3 cut(s) 361, 643, 886
BseYI CCCAGC 1 cut(s) 497
Bsh1236I CGCG 1 cut(s) 425
Bsh1285I CGRYCG 2 cut(s) 58, 67
BshFI GGCC 2 cut(s) 395, 435
BshNI GGYRCC 1 cut(s) 352
BshTI ACCGGT 1 cut(s) 113
BsiEI CGRYCG 2 cut(s) 58, 67
BsiHKAI GWGCWC 1 cut(s) 363
BsiSI CCGG 9 cut(s) 114, 214, 356, 371, 437, 454, 472, 704, 716
BslFI GGGAC 1 cut(s) 400
BslI CCNNNNNNNGG 8 cut(s) 73, 113, 229, 370, 424, 520, 614, 734
BsmAI GTCTC 2 cut(s) 163, 313
BsmBI CGTCTC 1 cut(s) 163
BsmFI GGGAC 1 cut(s) 400
BsnI GGCC 2 cut(s) 395, 435
Bsp1286I GDGCHC 2 cut(s) 80, 363
Bsp143I GATC 4 cut(s) 103, 692, 724, 891
BspACI CCGC 4 cut(s) 147, 246, 425, 773
BspANI GGCC 2 cut(s) 395, 435
BspCNI CTCAG 2 cut(s) 532, 625
BspFNI CGCG 1 cut(s) 425
BspHI TCATGA 1 cut(s) 945
BspLI GGNNCC 3 cut(s) 354, 694, 726
BspOI GCTAGC 1 cut(s) 626
BspPI GGATC 5 cut(s) 98, 687, 700, 719, 732
BspT107I GGYRCC 1 cut(s) 352
BsrDI GCAATG 1 cut(s) 265
BsrFI RCCGGY 2 cut(s) 113, 453
BsrI ACTGG 1 cut(s) 449
BssAI RCCGGY 2 cut(s) 113, 453
BssMI GATC 4 cut(s) 103, 692, 724, 891
BssNI GRCGYC 1 cut(s) 132
Bst4CI ACNGT 2 cut(s) 56, 812
Bst6I CTCTTC 3 cut(s) 231, 372, 821
BstACI GRCGYC 1 cut(s) 132
BstC8I GCNNGC 2 cut(s) 459, 624
BstDEI CTNAG 2 cut(s) 540, 633
BstF5I GGATG 4 cut(s) 80, 95, 583, 839
BstFNI CGCG 1 cut(s) 425
BstH2I RGCGCY 1 cut(s) 498
BstHHI GCGC 1 cut(s) 497
BstKTI GATC 4 cut(s) 106, 695, 727, 894
BstMAI GTCTC 2 cut(s) 163, 313
BstMBI GATC 4 cut(s) 103, 692, 724, 891
BstMCI CGRYCG 2 cut(s) 58, 67
BstMWI GCNNNNNNNGC 2 cut(s) 454, 509
BstNSI RCATGY 2 cut(s) 461, 881
BstSCI CCNGG 5 cut(s) 212, 435, 471, 702, 715
BstSFI CTRYAG 1 cut(s) 343
BstSLI GKGCMC 1 cut(s) 80
BstUI CGCG 1 cut(s) 425
BstV1I GCAGC 3 cut(s) 361, 643, 886
BstV2I GAAGAC 1 cut(s) 447
BstX2I RGATCY 2 cut(s) 692, 724
BstXI CCANNNNNNTGG 1 cut(s) 594
BstYI RGATCY 2 cut(s) 692, 724
BsuRI GGCC 2 cut(s) 395, 435
BtsCI GGATG 4 cut(s) 80, 95, 583, 839
BtsIMutI CAGTG 1 cut(s) 817
Cac8I GCNNGC 2 cut(s) 459, 624
CciI TCATGA 1 cut(s) 945
CfoI GCGC 1 cut(s) 497
Cfr10I RCCGGY 2 cut(s) 113, 453
Cfr13I GGNCC 2 cut(s) 393, 434
CspAI ACCGGT 1 cut(s) 113
CviAII CATG 7 cut(s) 20, 390, 458, 520, 878, 922, 946
DdeI CTNAG 2 cut(s) 540, 633
DpnI GATC 4 cut(s) 105, 694, 726, 893
DpnII GATC 4 cut(s) 103, 692, 724, 891
DrdI GACNNNNNNGTC 1 cut(s) 59
DseDI GACNNNNNNGTC 1 cut(s) 59
Eam1104I CTCTTC 3 cut(s) 231, 372, 821
EarI CTCTTC 3 cut(s) 231, 372, 821
Eco47III AGCGCT 1 cut(s) 496
Eco57I CTGAAG 1 cut(s) 333
Esp3I CGTCTC 1 cut(s) 163
FaeI CATG 7 cut(s) 23, 393, 461, 523, 881, 925, 949
FaqI GGGAC 1 cut(s) 400
FatI CATG 7 cut(s) 19, 389, 457, 519, 877, 921, 945
FauI CCCGC 1 cut(s) 418
FbaI TGATCA 1 cut(s) 891
FblI GTMKAC 1 cut(s) 63
Fnu4HI GCNGC 3 cut(s) 375, 657, 875
FokI GGATG 4 cut(s) 67, 82, 570, 846
Fsp4HI GCNGC 3 cut(s) 375, 657, 875
FspBI CTAG 3 cut(s) 14, 623, 687
GlaI GCGC 1 cut(s) 496
GluI GCNGC 3 cut(s) 375, 657, 875
GsaI CCCAGC 1 cut(s) 501
HaeII RGCGCY 1 cut(s) 498
HaeIII GGCC 2 cut(s) 395, 435
HapII CCGG 9 cut(s) 114, 214, 356, 371, 437, 454, 472, 704, 716
HhaI GCGC 1 cut(s) 497
Hin1I GRCGYC 1 cut(s) 132
Hin1II CATG 7 cut(s) 23, 393, 461, 523, 881, 925, 949
Hin6I GCGC 1 cut(s) 495
HinP1I GCGC 1 cut(s) 495
HincII GTYRAC 3 cut(s) 64, 210, 340
HindII GTYRAC 3 cut(s) 64, 210, 340
HinfI GANTC 8 cut(s) 60, 69, 197, 206, 386, 413, 637, 782
HpaII CCGG 9 cut(s) 114, 214, 356, 371, 437, 454, 472, 704, 716
HphI GGTGA 2 cut(s) 500, 611
Hpy166II GTNNAC 4 cut(s) 64, 210, 235, 340
Hpy188I TCNGA 4 cut(s) 313, 541, 697, 729
Hpy188III TCNNGA 2 cut(s) 928, 946
Hpy8I GTNNAC 4 cut(s) 64, 210, 235, 340
Hpy99I CGWCG 2 cut(s) 11, 137
HpyAV CCTTC 2 cut(s) 109, 772
HpyCH4III ACNGT 2 cut(s) 56, 812
HpyCH4IV ACGT 1 cut(s) 132
HpyCH4V TGCA 4 cut(s) 95, 258, 461, 583
HpyF10VI GCNNNNNNNGC 2 cut(s) 454, 509
HpyF3I CTNAG 2 cut(s) 540, 633
HpySE526I ACGT 1 cut(s) 132
Hsp92I GRCGYC 1 cut(s) 132
Hsp92II CATG 7 cut(s) 23, 393, 461, 523, 881, 925, 949
HspAI GCGC 1 cut(s) 495
Ksp22I TGATCA 1 cut(s) 891
Kzo9I GATC 4 cut(s) 103, 692, 724, 891
LmnI GCTCC 3 cut(s) 225, 358, 871
Lsp1109I GCAGC 3 cut(s) 361, 643, 886
LweI GCATC 2 cut(s) 104, 592
MaeI CTAG 3 cut(s) 14, 623, 687
MaeII ACGT 1 cut(s) 132
MaeIII GTNAC 3 cut(s) 674, 905, 916
MalI GATC 4 cut(s) 105, 694, 726, 893
MboI GATC 4 cut(s) 103, 692, 724, 891
MboII GAAGA 7 cut(s) 218, 359, 395, 452, 614, 835, 838
MflI RGATCY 2 cut(s) 692, 724
MhlI GDGCHC 2 cut(s) 80, 363
MluCI AATT 3 cut(s) 740, 901, 949
MlyI GAGTC 6 cut(s) 63, 69, 206, 215, 422, 646
MnlI CCTC 7 cut(s) 234, 305, 375, 660, 808, 844, 862
MseI TTAA 1 cut(s) 558
MslI CAYNNNNRTG 1 cut(s) 246
MspI CCGG 9 cut(s) 114, 214, 356, 371, 437, 454, 472, 704, 716
MspR9I CCNGG 5 cut(s) 214, 437, 473, 704, 717
MvnI CGCG 1 cut(s) 425
MwoI GCNNNNNNNGC 2 cut(s) 454, 509
NciI CCSGG 5 cut(s) 214, 437, 473, 704, 717
NdeII GATC 4 cut(s) 103, 692, 724, 891
NheI GCTAGC 1 cut(s) 622
NlaIII CATG 7 cut(s) 23, 393, 461, 523, 881, 925, 949
NlaIV GGNNCC 3 cut(s) 354, 694, 726
NmeAIII GCCGAG 1 cut(s) 229
NmuCI GTSAC 2 cut(s) 905, 916
NspI RCATGY 2 cut(s) 461, 881
OliI CACNNNNGTG 1 cut(s) 246
PaeI GCATGC 1 cut(s) 461
PagI TCATGA 1 cut(s) 945
PcsI WCGNNNNNNNCGW 2 cut(s) 60, 64
PfeI GAWTC 2 cut(s) 386, 782
PflFI GACNNNGTC 1 cut(s) 134
PflMI CCANNNNNTGG 1 cut(s) 520
PinAI ACCGGT 1 cut(s) 113
PkrI GCNGC 3 cut(s) 376, 658, 876
PleI GAGTC 6 cut(s) 63, 68, 205, 214, 421, 645
PpsI GAGTC 6 cut(s) 63, 68, 205, 214, 421, 645
PspFI CCCAGC 1 cut(s) 497
PspN4I GGNNCC 3 cut(s) 354, 694, 726
PspPI GGNCC 2 cut(s) 393, 434
PsuI RGATCY 2 cut(s) 692, 724
PsyI GACNNNGTC 1 cut(s) 134
RseI CAYNNNNRTG 1 cut(s) 246
SalI GTCGAC 1 cut(s) 62
SaqAI TTAA 1 cut(s) 558
SatI GCNGC 3 cut(s) 375, 657, 875
Sau3AI GATC 4 cut(s) 103, 692, 724, 891
Sau96I GGNCC 2 cut(s) 393, 434
SchI GAGTC 6 cut(s) 63, 69, 206, 215, 422, 646
ScrFI CCNGG 5 cut(s) 214, 437, 473, 704, 717
SduI GDGCHC 2 cut(s) 80, 363
SfaNI GCATC 2 cut(s) 104, 592
SfcI CTRYAG 1 cut(s) 343
SmiMI CAYNNNNRTG 1 cut(s) 246
SmlI CTYRAG 1 cut(s) 926
SmoI CTYRAG 1 cut(s) 926
SpeI ACTAGT 1 cut(s) 686
SphI GCATGC 1 cut(s) 461
Sse9I AATT 3 cut(s) 740, 901, 949
SsiI CCGC 4 cut(s) 147, 246, 425, 773
SspMI CTAG 3 cut(s) 14, 623, 687
StyD4I CCNGG 5 cut(s) 212, 435, 471, 702, 715
TaaI ACNGT 2 cut(s) 56, 812
TaiI ACGT 1 cut(s) 135
TaqI TCGA 3 cut(s) 58, 63, 102
TaqII GACCGA 1 cut(s) 81
TasI AATT 3 cut(s) 740, 901, 949
TfiI GAWTC 2 cut(s) 386, 782
Tru1I TTAA 1 cut(s) 558
Tru9I TTAA 1 cut(s) 558
TscAI CASTG 1 cut(s) 817
TseFI GTSAC 2 cut(s) 905, 916
TseI GCWGC 3 cut(s) 374, 656, 874
Tsp45I GTSAC 2 cut(s) 905, 916
TspDTI ATGAA 3 cut(s) 378, 396, 934
TspRI CASTG 1 cut(s) 817
Tth111I GACNNNGTC 1 cut(s) 134
Van91I CCANNNNNTGG 1 cut(s) 520
XceI RCATGY 2 cut(s) 461, 881
XmiI GTMKAC 1 cut(s) 63
XspI CTAG 3 cut(s) 14, 623, 687
ZraI GACGTC 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.