pycom05g17560

Carboxylesterase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Reverse (-)
20691870 .. 20692641
772 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g17560.2

Sequence Viewer

Length: 261 bp
ATGTGTTCAGTGGCTATGGTGGGACAGGGGAGAGGAAGAGCGGCGAGTCTTCTACTTTCTTCATTGAAGTTGAAAATCCAAAACATGAGCAACGAAGAACTATGTTATGACTTTTCTCCAATGATCAAAGTATACAAAGACGGTCGAGTCGAGAGACTCCTTGGCACGGCCACAGTTCCTCCATCAACAACCCGAAACCCGAGTGCAATCCAAAGACATTGTCATCTCCCAACAACCAGCAATATCTGTAAGGCTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

87

Amino Acids

9.41

Weight (kDa)

9.56

Isoelectric Point (pI)

40.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000397)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48690 AT3G48700
fragaria_vesca FvH4_2g06400 FvH4_2g06430 FvH4_2g06450 FvH4_2g06480 FvH4_2g06560
malus_domestica MD05G1076400.v1.1 MD05G1076500.v1.1 MD05G1078900.v1.1 MD05G1191000.v1.1 MD05G1191100.v1.1 MD08G1226300.v1.1 MD10G1091000.v1.1 MD10G1091200.v1.1 MD10G1091400.v1.1 MD10G1091600.v1.1 MD10G1091900.v1.1
prunus_persica Prupe.8G120800_v2.0.a1 Prupe.8G121100_v2.0.a1 Prupe.8G121200_v2.0.a1 Prupe.8G121300_v2.0.a1 Prupe.8G121400_v2.0.a1 Prupe.8G121500_v2.0.a1 Prupe.8G121600_v2.0.a1 Prupe.8G121700_v2.0.a1 Prupe.8G121900_v2.0.a1 Prupe.8G122000_v2.0.a1 Prupe.I000800_v2.0.a1
pyrus_communis pycom05g07040 pycom05g17560 pycom05g17680 pycom05g17760 pycom10g07450 pycom10g07470 pycom10g07550
rosa_chinensis RchiOBHm_Chr6g0258271 RchiOBHm_Chr6g0258281 RchiOBHm_Chr6g0258291 RchiOBHm_Chr6g0258311 RchiOBHm_Chr6g0258321 RchiOBHm_Chr6g0258501
rosa_laevigata RLG00000014606 RLG00000014621 RLG00000014622 RLG00000014624 RLG00000014625 RLG00000014627 RLG00000014629 RLG00000014633 RLG00000014635
rosa_multiflora Rmu_co8014592.1_g000001 Rmu_co8366243.1_g000001 Rmu_sc0001663.1_g000004 Rmu_sc0005877.1_g000001 Rmu_sc0005877.1_g000006 Rmu_sc0005877.1_g000007 Rmu_sc0007367.1_g000009 Rmu_sc0007367.1_g000019 Rmu_sc0010616.1_g000022 Rmu_sc0010616.1_g000023 Rmu_ssc0000213.1_g000009
rosa_roxburghii Rroxscaffold_178G00437230 Rroxscaffold_178G00437250 Rroxscaffold_178G00437280 Rroxscaffold_178G00437320 Rroxscaffold_178G00437340 Rroxscaffold_178G00437350 Rroxscaffold_178G00437480 Rroxscaffold_7G00205390 Rroxscaffold_7G00205410 Rroxscaffold_7G00205450 Rroxscaffold_7G00205490 Rroxscaffold_7G00205510 Rroxscaffold_7G00205520 Rroxscaffold_7G00205670 Rroxscaffold_7G00205730
rosa_rugosa Rorug05G0579800 Rorug05G0580500 Rorug05G0580600 Rorug05G0580700 Rorug05G0580900 Rorug05G0581000 Rorug05G0581900
rosa_samantha Rh6CG084800 Rh6CG085100 Rh6CG085200 Rh6CG085400 Rh6CG085500 Rh6CG085600 Rh6CG085700 Rh6CG086900
rosa_wichuraiana Rw6G008300 Rw6G008310 Rw6G008360 Rw6G008370 Rw6G008380 Rw6G008390 Rw6G008430 Rw6G008440 Rw6G008530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 146
AccBSI CCGCTC 1 cut(s) 41
AccI GTMKAC 1 cut(s) 132
AciI CCGC 1 cut(s) 41
AcoI YGGCCR 1 cut(s) 168
AfiI CCNNNNNNNGG 1 cut(s) 166
AgsI TTSAA 2 cut(s) 67, 73
Alw26I GTCTC 1 cut(s) 148
Ama87I CYCGRG 1 cut(s) 199
AoxI GGCC 1 cut(s) 168
ArsI GACNNNNNNTTYG 2 cut(s) 205, 237
AvaI CYCGRG 1 cut(s) 199
BbsI GAAGAC 1 cut(s) 41
BccI CCATC 1 cut(s) 190
BceAI ACGGC 1 cut(s) 183
BclI TGATCA 1 cut(s) 123
BcoDI GTCTC 1 cut(s) 148
BisI GCNGC 1 cut(s) 42
BlsI GCNGC 1 cut(s) 43
BmeT110I CYCGRG 1 cut(s) 199
BpiI GAAGAC 1 cut(s) 41
BsaJI CCNNGG 1 cut(s) 160
BsaXI ACNNNNNCTCC 2 cut(s) 163, 193
Bsc4I CCNNNNNNNGG 1 cut(s) 166
BseDI CCNNGG 1 cut(s) 160
BseLI CCNNNNNNNGG 1 cut(s) 166
Bsh1285I CGRYCG 1 cut(s) 145
BshFI GGCC 1 cut(s) 170
BsiEI CGRYCG 1 cut(s) 145
BsiHKCI CYCGRG 1 cut(s) 199
BslFI GGGAC 1 cut(s) 36
BslI CCNNNNNNNGG 1 cut(s) 166
BsmAI GTCTC 1 cut(s) 148
BsmFI GGGAC 1 cut(s) 36
BsnI GGCC 1 cut(s) 170
BsoBI CYCGRG 1 cut(s) 199
Bsp143I GATC 1 cut(s) 123
BspACI CCGC 1 cut(s) 41
BspANI GGCC 1 cut(s) 170
BspQI GCTCTTC 1 cut(s) 31
BsrBI CCGCTC 1 cut(s) 41
BssECI CCNNGG 1 cut(s) 160
BssMI GATC 1 cut(s) 123
BssNAI GTATAC 1 cut(s) 133
BssT1I CCWWGG 1 cut(s) 160
Bst1107I GTATAC 1 cut(s) 133
Bst4CI ACNGT 2 cut(s) 143, 175
Bst6I CTCTTC 1 cut(s) 31
BstKTI GATC 1 cut(s) 126
BstMAI GTCTC 1 cut(s) 148
BstMBI GATC 1 cut(s) 123
BstMCI CGRYCG 1 cut(s) 145
BstV2I GAAGAC 1 cut(s) 41
BstZ17I GTATAC 1 cut(s) 133
BsuRI GGCC 1 cut(s) 170
BtsIMutI CAGTG 1 cut(s) 15
CviAII CATG 1 cut(s) 85
CviJI RGCY 3 cut(s) 14, 170, 254
CviKI_1 RGCY 3 cut(s) 14, 170, 254
DpnI GATC 1 cut(s) 125
DpnII GATC 1 cut(s) 123
DrdI GACNNNNNNGTC 1 cut(s) 146
DseDI GACNNNNNNGTC 1 cut(s) 146
EaeI YGGCCR 1 cut(s) 168
Eam1104I CTCTTC 1 cut(s) 31
EarI CTCTTC 1 cut(s) 31
Eco130I CCWWGG 1 cut(s) 160
Eco88I CYCGRG 1 cut(s) 199
EcoT14I CCWWGG 1 cut(s) 160
ErhI CCWWGG 1 cut(s) 160
FaeI CATG 1 cut(s) 88
FaiI YATR 5 cut(s) 17, 86, 103, 108, 133
FaqI GGGAC 1 cut(s) 36
FatI CATG 1 cut(s) 84
FbaI TGATCA 1 cut(s) 123
FblI GTMKAC 1 cut(s) 132
Fnu4HI GCNGC 1 cut(s) 42
Fsp4HI GCNGC 1 cut(s) 42
GluI GCNGC 1 cut(s) 42
HaeIII GGCC 1 cut(s) 170
Hin1II CATG 1 cut(s) 88
HinfI GANTC 3 cut(s) 46, 147, 156
Hpy166II GTNNAC 1 cut(s) 133
Hpy188III TCNNGA 1 cut(s) 151
Hpy8I GTNNAC 1 cut(s) 133
HpyCH4III ACNGT 2 cut(s) 143, 175
HpyCH4V TGCA 1 cut(s) 206
Hsp92II CATG 1 cut(s) 88
Ksp22I TGATCA 1 cut(s) 123
Kzo9I GATC 1 cut(s) 123
LguI GCTCTTC 1 cut(s) 31
LpnPI CCDG 2 cut(s) 11, 250
MalI GATC 1 cut(s) 125
MbiI CCGCTC 1 cut(s) 41
MboI GATC 1 cut(s) 123
MboII GAAGA 4 cut(s) 41, 48, 51, 107
MlyI GAGTC 3 cut(s) 55, 150, 156
MnlI CCTC 2 cut(s) 26, 189
NdeII GATC 1 cut(s) 123
NlaIII CATG 1 cut(s) 88
PciSI GCTCTTC 1 cut(s) 31
PcsI WCGNNNNNNNCGW 1 cut(s) 147
PflFI GACNNNGTC 1 cut(s) 219
PkrI GCNGC 1 cut(s) 43
PleI GAGTC 3 cut(s) 54, 150, 155
PpsI GAGTC 3 cut(s) 54, 150, 155
PsyI GACNNNGTC 1 cut(s) 219
SapI GCTCTTC 1 cut(s) 31
SatI GCNGC 1 cut(s) 42
Sau3AI GATC 1 cut(s) 123
SchI GAGTC 3 cut(s) 55, 150, 156
SsiI CCGC 1 cut(s) 41
StyI CCWWGG 1 cut(s) 160
TaaI ACNGT 2 cut(s) 143, 175
TaqI TCGA 2 cut(s) 145, 150
TauI GCSGC 1 cut(s) 44
TscAI CASTG 1 cut(s) 15
TspDTI ATGAA 1 cut(s) 51
TspRI CASTG 1 cut(s) 15
Tth111I GACNNNGTC 1 cut(s) 219
XmiI GTMKAC 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.