Prupe.8G121200_v2.0.a1

Carboxylesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000397
Physical Location & Seq
Reverse (-)
14742939 .. 14743886
948 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G121200.1

Sequence Viewer

Length: 948 bp
ATGAGCAATGAACTAGCCCATGACTTCTCTCCTCTCATCAAAATATACAAAGATGGTCGAATTGAGCGGCTCACAGGCACAACCACCCTTCCTCCATCCTTAGATCCCCAAACCGGCGTCGAATCGAAAGACGTTGTGATCTCAAAAGAACCAGCATTATCTGCCAGGCTTTACCTCCCCACAAAATCCACCACCAACTCCCCCAACAAAAAGCTCCCTCTTCTTGTTTACATCCACGGAGGCGGCTTCGTGGTCGAACGCGCCTCTTCTTCCATTTACCACAACTACCTTAACGCCTTAGTCGCGGAGACCAACATCGTTGCTGTCTCTGTTGAGTATAGGCTAGCCCCAGAGCACTCTCTGCCTGCGGCTTACGATGATGCATGGGGTTCTTTCAAATGGGTTGCTTCCCATTCTGATGCAAAGGGCTCTGAAGATTGGCTAAATCGCCATGCAGATTTCCAACGTGTGTTTATTGCCGGGGACAGCGCCGGGGCTAACATAGCACACAACGTGGGCTTGAGAGTAGGCTCTGAGGGGTTGGGTGGTGTTAAGCCAAAAGGGATTGTGTTGGTGCATCCATATTTTGGGGGCAGTGAAGCCATTGGGGCAGAGCAATCTCTGCCCCCAATGGTAAGAGAGTACATGGTTGGTTTGTGGCTTTTGGCTTACCCTTCGACTAGTGGATCCGATGACCCGCTTTTCAACCCGGGTAAGGATCCGAAACTCGGGGGATTGGGGTGTGAGAAAGTGCTGGTTTGTGTTGCTGAGAAAGATGCTTTGAAAGATAGGGGATGGCATTATAGTGAGGTACTGAAAAAGAGTGGATGGAAAGGGGCTGTGGATGTGATTGAATCAAAGGGGGAGAACCATGTGTTCCATTTGTTCAATCCCACTTGTGACAATGCTGTGGCCTTGTTAAAAAAGATGGTTTCTTTTATTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

316

Amino Acids

34.15

Weight (kDa)

6.41

Isoelectric Point (pI)

38.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000397)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48690 AT3G48700
fragaria_vesca FvH4_2g06400 FvH4_2g06430 FvH4_2g06450 FvH4_2g06480 FvH4_2g06560
malus_domestica MD05G1076400.v1.1 MD05G1076500.v1.1 MD05G1078900.v1.1 MD05G1191000.v1.1 MD05G1191100.v1.1 MD08G1226300.v1.1 MD10G1091000.v1.1 MD10G1091200.v1.1 MD10G1091400.v1.1 MD10G1091600.v1.1 MD10G1091900.v1.1
prunus_persica Prupe.8G120800_v2.0.a1 Prupe.8G121100_v2.0.a1 Prupe.8G121200_v2.0.a1 Prupe.8G121300_v2.0.a1 Prupe.8G121400_v2.0.a1 Prupe.8G121500_v2.0.a1 Prupe.8G121600_v2.0.a1 Prupe.8G121700_v2.0.a1 Prupe.8G121900_v2.0.a1 Prupe.8G122000_v2.0.a1 Prupe.I000800_v2.0.a1
pyrus_communis pycom05g07040 pycom05g17560 pycom05g17680 pycom05g17760 pycom10g07450 pycom10g07470 pycom10g07550
rosa_chinensis RchiOBHm_Chr6g0258271 RchiOBHm_Chr6g0258281 RchiOBHm_Chr6g0258291 RchiOBHm_Chr6g0258311 RchiOBHm_Chr6g0258321 RchiOBHm_Chr6g0258501
rosa_laevigata RLG00000014606 RLG00000014621 RLG00000014622 RLG00000014624 RLG00000014625 RLG00000014627 RLG00000014629 RLG00000014633 RLG00000014635
rosa_multiflora Rmu_co8014592.1_g000001 Rmu_co8366243.1_g000001 Rmu_sc0001663.1_g000004 Rmu_sc0005877.1_g000001 Rmu_sc0005877.1_g000006 Rmu_sc0005877.1_g000007 Rmu_sc0007367.1_g000009 Rmu_sc0007367.1_g000019 Rmu_sc0010616.1_g000022 Rmu_sc0010616.1_g000023 Rmu_ssc0000213.1_g000009
rosa_roxburghii Rroxscaffold_178G00437230 Rroxscaffold_178G00437250 Rroxscaffold_178G00437280 Rroxscaffold_178G00437320 Rroxscaffold_178G00437340 Rroxscaffold_178G00437350 Rroxscaffold_178G00437480 Rroxscaffold_7G00205390 Rroxscaffold_7G00205410 Rroxscaffold_7G00205450 Rroxscaffold_7G00205490 Rroxscaffold_7G00205510 Rroxscaffold_7G00205520 Rroxscaffold_7G00205670 Rroxscaffold_7G00205730
rosa_rugosa Rorug05G0579800 Rorug05G0580500 Rorug05G0580600 Rorug05G0580700 Rorug05G0580900 Rorug05G0581000 Rorug05G0581900
rosa_samantha Rh6CG084800 Rh6CG085100 Rh6CG085200 Rh6CG085400 Rh6CG085500 Rh6CG085600 Rh6CG085700 Rh6CG086900
rosa_wichuraiana Rw6G008300 Rw6G008310 Rw6G008360 Rw6G008370 Rw6G008380 Rw6G008390 Rw6G008430 Rw6G008440 Rw6G008530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 587
AccBSI CCGCTC 1 cut(s) 67
AccII CGCG 2 cut(s) 261, 305
AciI CCGC 5 cut(s) 67, 243, 305, 368, 698
AclWI GGATC 5 cut(s) 98, 681, 694, 713, 726
AcuI CTGAAG 1 cut(s) 453
AcyI GRCGYC 1 cut(s) 117
AdeI CACNNNGTG 1 cut(s) 514
AfaI GTAC 2 cut(s) 644, 813
AfiI CCNNNNNNNGG 4 cut(s) 113, 587, 715, 728
AflIII ACRYGT 1 cut(s) 466
AgsI TTSAA 5 cut(s) 397, 706, 784, 854, 889
AhlI ACTAGT 1 cut(s) 680
AjnI CCWGG 1 cut(s) 164
AluBI AGCT 1 cut(s) 214
AluI AGCT 1 cut(s) 214
Alw21I GWGCWC 1 cut(s) 357
Alw26I GTCTC 2 cut(s) 302, 331
AlwI GGATC 5 cut(s) 98, 681, 694, 713, 726
Ama87I CYCGRG 2 cut(s) 709, 728
AoxI GGCC 1 cut(s) 912
AseI ATTAAT 1 cut(s) 942
AspLEI GCGC 2 cut(s) 263, 491
AsuC2I CCSGG 4 cut(s) 481, 493, 710, 711
AsuNHI GCTAGC 1 cut(s) 343
AvaI CYCGRG 2 cut(s) 709, 728
BamHI GGATCC 2 cut(s) 686, 718
BanII GRGCYC 1 cut(s) 431
Bbv12I GWGCWC 1 cut(s) 357
BccI CCATC 5 cut(s) 47, 103, 789, 822, 922
BciT130I CCWGG 1 cut(s) 166
BcnI CCSGG 4 cut(s) 481, 493, 710, 711
BcoDI GTCTC 2 cut(s) 302, 331
BcuI ACTAGT 1 cut(s) 680
BfaI CTAG 3 cut(s) 14, 344, 681
BfoI RGCGCY 1 cut(s) 492
BglI GCCNNNNNGGC 1 cut(s) 608
BisI GCNGC 3 cut(s) 68, 244, 369
BlsI GCNGC 3 cut(s) 69, 245, 370
Bme1390I CCNGG 5 cut(s) 166, 481, 493, 710, 711
BmeT110I CYCGRG 2 cut(s) 709, 728
BmiI GGNNCC 2 cut(s) 688, 720
BmrFI CCNGG 5 cut(s) 166, 481, 493, 710, 711
BmsI GCATC 4 cut(s) 370, 409, 586, 766
BmtI GCTAGC 1 cut(s) 347
BpuEI CTTGAG 1 cut(s) 541
BpuMI CCSGG 4 cut(s) 481, 493, 710, 711
BsaHI GRCGYC 1 cut(s) 117
BsaI GGTCTC 1 cut(s) 302
BsaJI CCNNGG 4 cut(s) 235, 480, 492, 709
BsaXI ACNNNNNCTCC 2 cut(s) 76, 106
Bsc4I CCNNNNNNNGG 4 cut(s) 113, 587, 715, 728
Bse118I RCCGGY 1 cut(s) 113
Bse3DI GCAATG 1 cut(s) 13
BseBI CCWGG 1 cut(s) 166
BseDI CCNNGG 4 cut(s) 235, 480, 492, 709
BseGI GGATG 6 cut(s) 95, 231, 577, 800, 833, 850
BseLI CCNNNNNNNGG 4 cut(s) 113, 587, 715, 728
BseMI GCAATG 1 cut(s) 13
BseMII CTCAG 2 cut(s) 525, 759
BseRI GAGGAG 1 cut(s) 21
Bsh1236I CGCG 2 cut(s) 261, 305
BshFI GGCC 1 cut(s) 914
BsiHKAI GWGCWC 1 cut(s) 357
BsiHKCI CYCGRG 2 cut(s) 709, 728
BsiSI CCGG 4 cut(s) 114, 480, 492, 710
BslFI GGGAC 1 cut(s) 497
BslI CCNNNNNNNGG 4 cut(s) 113, 587, 715, 728
BsmAI GTCTC 2 cut(s) 302, 331
BsmFI GGGAC 1 cut(s) 497
BsnI GGCC 1 cut(s) 914
Bso31I GGTCTC 1 cut(s) 302
BsoBI CYCGRG 2 cut(s) 709, 728
Bsp1286I GDGCHC 2 cut(s) 357, 431
Bsp143I GATC 4 cut(s) 103, 138, 686, 718
BspACI CCGC 5 cut(s) 67, 243, 305, 368, 698
BspANI GGCC 1 cut(s) 914
BspCNI CTCAG 2 cut(s) 526, 760
BspFNI CGCG 2 cut(s) 261, 305
BspLI GGNNCC 2 cut(s) 688, 720
BspOI GCTAGC 1 cut(s) 347
BspPI GGATC 5 cut(s) 98, 681, 694, 713, 726
BspTNI GGTCTC 1 cut(s) 302
BsrBI CCGCTC 1 cut(s) 67
BsrDI GCAATG 1 cut(s) 13
BsrFI RCCGGY 1 cut(s) 113
BssAI RCCGGY 1 cut(s) 113
BssECI CCNNGG 4 cut(s) 235, 480, 492, 709
BssMI GATC 4 cut(s) 103, 138, 686, 718
BssNI GRCGYC 1 cut(s) 117
Bst2UI CCWGG 1 cut(s) 166
Bst6I CTCTTC 2 cut(s) 225, 271
BstACI GRCGYC 1 cut(s) 117
BstAPI GCANNNNNTGC 3 cut(s) 161, 361, 622
BstC8I GCNNGC 2 cut(s) 345, 366
BstDEI CTNAG 4 cut(s) 100, 298, 534, 768
BstDSI CCRYGG 1 cut(s) 235
BstF5I GGATG 6 cut(s) 95, 231, 577, 800, 833, 850
BstFNI CGCG 2 cut(s) 261, 305
BstH2I RGCGCY 1 cut(s) 492
BstHHI GCGC 2 cut(s) 263, 491
BstKTI GATC 4 cut(s) 106, 141, 689, 721
BstMAI GTCTC 2 cut(s) 302, 331
BstMBI GATC 4 cut(s) 103, 138, 686, 718
BstMWI GCNNNNNNNGC 6 cut(s) 161, 302, 361, 503, 608, 622
BstNI CCWGG 1 cut(s) 166
BstSCI CCNGG 5 cut(s) 164, 479, 491, 708, 709
BstUI CGCG 2 cut(s) 261, 305
BstX2I RGATCY 3 cut(s) 103, 686, 718
BstYI RGATCY 3 cut(s) 103, 686, 718
BsuRI GGCC 1 cut(s) 914
BtgI CCRYGG 1 cut(s) 235
BtsCI GGATG 6 cut(s) 95, 231, 577, 800, 833, 850
BtsI GCAGTG 1 cut(s) 601
BtsIMutI CAGTG 1 cut(s) 601
Cac8I GCNNGC 2 cut(s) 345, 366
CfoI GCGC 2 cut(s) 263, 491
Cfr10I RCCGGY 1 cut(s) 113
Cfr9I CCCGGG 1 cut(s) 709
CseI GACGC 1 cut(s) 106
Csp6I GTAC 2 cut(s) 643, 812
CviAII CATG 5 cut(s) 20, 384, 452, 646, 872
CviQI GTAC 2 cut(s) 643, 812
DdeI CTNAG 4 cut(s) 100, 298, 534, 768
DpnI GATC 4 cut(s) 105, 140, 688, 720
DpnII GATC 4 cut(s) 103, 138, 686, 718
DraIII CACNNNGTG 1 cut(s) 514
Eam1104I CTCTTC 2 cut(s) 225, 271
EarI CTCTTC 2 cut(s) 225, 271
Eco24I GRGCYC 1 cut(s) 431
Eco31I GGTCTC 1 cut(s) 302
Eco57I CTGAAG 1 cut(s) 453
Eco88I CYCGRG 2 cut(s) 709, 728
EcoRII CCWGG 1 cut(s) 164
EcoT22I ATGCAT 1 cut(s) 385
EcoT38I GRGCYC 1 cut(s) 431
FaeI CATG 5 cut(s) 23, 387, 455, 649, 875
FaqI GGGAC 1 cut(s) 497
FatI CATG 5 cut(s) 19, 383, 451, 645, 871
FauI CCCGC 1 cut(s) 705
Fnu4HI GCNGC 3 cut(s) 68, 244, 369
FokI GGATG 6 cut(s) 82, 218, 564, 807, 840, 857
FriOI GRGCYC 1 cut(s) 431
Fsp4HI GCNGC 3 cut(s) 68, 244, 369
FspBI CTAG 3 cut(s) 14, 344, 681
GlaI GCGC 2 cut(s) 262, 490
GluI GCNGC 3 cut(s) 68, 244, 369
HaeII RGCGCY 1 cut(s) 492
HaeIII GGCC 1 cut(s) 914
HapII CCGG 4 cut(s) 114, 480, 492, 710
HgaI GACGC 1 cut(s) 106
HhaI GCGC 2 cut(s) 263, 491
Hin1I GRCGYC 1 cut(s) 117
Hin1II CATG 5 cut(s) 23, 387, 455, 649, 875
Hin6I GCGC 2 cut(s) 261, 489
HinP1I GCGC 2 cut(s) 261, 489
HinfI GANTC 2 cut(s) 122, 854
HpaII CCGG 4 cut(s) 114, 480, 492, 710
Hpy166II GTNNAC 1 cut(s) 229
Hpy188I TCNGA 5 cut(s) 418, 433, 535, 691, 723
Hpy8I GTNNAC 1 cut(s) 229
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 2 cut(s) 98, 684
HpyCH4IV ACGT 3 cut(s) 132, 466, 513
HpyCH4V TGCA 4 cut(s) 383, 422, 455, 577
HpyF10VI GCNNNNNNNGC 6 cut(s) 161, 302, 361, 503, 608, 622
HpyF3I CTNAG 4 cut(s) 100, 298, 534, 768
HpySE526I ACGT 3 cut(s) 132, 466, 513
Hsp92I GRCGYC 1 cut(s) 117
Hsp92II CATG 5 cut(s) 23, 387, 455, 649, 875
HspAI GCGC 2 cut(s) 261, 489
Kzo9I GATC 4 cut(s) 103, 138, 686, 718
LmnI GCTCC 1 cut(s) 219
LweI GCATC 4 cut(s) 370, 409, 586, 766
MaeI CTAG 3 cut(s) 14, 344, 681
MaeII ACGT 3 cut(s) 132, 466, 513
MaeIII GTNAC 1 cut(s) 899
MalI GATC 4 cut(s) 105, 140, 688, 720
MbiI CCGCTC 1 cut(s) 67
MboI GATC 4 cut(s) 103, 138, 686, 718
MboII GAAGA 4 cut(s) 212, 258, 261, 446
MflI RGATCY 3 cut(s) 103, 686, 718
MhlI GDGCHC 2 cut(s) 357, 431
MluCI AATT 2 cut(s) 60, 943
MmeI TCCRAC 1 cut(s) 487
MnlI CCTC 8 cut(s) 42, 102, 185, 228, 233, 274, 529, 802
Mph1103I ATGCAT 1 cut(s) 385
MseI TTAA 4 cut(s) 291, 552, 920, 942
MslI CAYNNNNRTG 2 cut(s) 417, 804
MspI CCGG 4 cut(s) 114, 480, 492, 710
MspR9I CCNGG 5 cut(s) 166, 481, 493, 710, 711
MvaI CCWGG 1 cut(s) 166
MvnI CGCG 2 cut(s) 261, 305
MwoI GCNNNNNNNGC 6 cut(s) 161, 302, 361, 503, 608, 622
NciI CCSGG 4 cut(s) 481, 493, 710, 711
NdeII GATC 4 cut(s) 103, 138, 686, 718
NheI GCTAGC 1 cut(s) 343
NlaIII CATG 5 cut(s) 23, 387, 455, 649, 875
NlaIV GGNNCC 2 cut(s) 688, 720
NmuCI GTSAC 1 cut(s) 899
NsiI ATGCAT 1 cut(s) 385
PfeI GAWTC 2 cut(s) 122, 854
PflMI CCANNNNNTGG 1 cut(s) 587
PkrI GCNGC 3 cut(s) 69, 245, 370
PshBI ATTAAT 1 cut(s) 942
Psp6I CCWGG 1 cut(s) 164
PspGI CCWGG 1 cut(s) 164
PspN4I GGNNCC 2 cut(s) 688, 720
PsuI RGATCY 3 cut(s) 103, 686, 718
RsaI GTAC 2 cut(s) 644, 813
RsaNI GTAC 2 cut(s) 643, 812
RseI CAYNNNNRTG 2 cut(s) 417, 804
SaqAI TTAA 4 cut(s) 291, 552, 920, 942
SatI GCNGC 3 cut(s) 68, 244, 369
Sau3AI GATC 4 cut(s) 103, 138, 686, 718
ScrFI CCNGG 5 cut(s) 166, 481, 493, 710, 711
SduI GDGCHC 2 cut(s) 357, 431
SetI ASST 7 cut(s) 135, 177, 216, 291, 469, 516, 813
SfaNI GCATC 4 cut(s) 370, 409, 586, 766
SmaI CCCGGG 1 cut(s) 711
SmiMI CAYNNNNRTG 2 cut(s) 417, 804
SmlI CTYRAG 1 cut(s) 520
SmoI CTYRAG 1 cut(s) 520
SpeI ACTAGT 1 cut(s) 680
Sse9I AATT 2 cut(s) 60, 943
SsiI CCGC 5 cut(s) 67, 243, 305, 368, 698
SspMI CTAG 3 cut(s) 14, 344, 681
StyD4I CCNGG 5 cut(s) 164, 479, 491, 708, 709
TaiI ACGT 3 cut(s) 135, 469, 516
TaqI TCGA 5 cut(s) 58, 120, 125, 255, 677
TasI AATT 2 cut(s) 60, 943
TatI WGTACW 1 cut(s) 642
TauI GCSGC 3 cut(s) 70, 246, 371
TfiI GAWTC 2 cut(s) 122, 854
Tru1I TTAA 4 cut(s) 291, 552, 920, 942
Tru9I TTAA 4 cut(s) 291, 552, 920, 942
TscAI CASTG 1 cut(s) 601
TseFI GTSAC 1 cut(s) 899
Tsp45I GTSAC 1 cut(s) 899
TspDTI ATGAA 1 cut(s) 24
TspGWI ACGGA 1 cut(s) 252
TspMI CCCGGG 1 cut(s) 709
TspRI CASTG 1 cut(s) 601
Van91I CCANNNNNTGG 1 cut(s) 587
VspI ATTAAT 1 cut(s) 942
XmaI CCCGGG 1 cut(s) 709
XspI CTAG 3 cut(s) 14, 344, 681
Zsp2I ATGCAT 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.