Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0000653

Physical Location & Seq

Genomic Coordinates Forward (+)

1710006 .. 1713290

Gene Structure 3285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g02040.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGAAGGGGAAAATGTTTGCACATGAGAATGTTGTTGGTGGGAAGCGTAAGGAAAAGGCTCCTGATGTGGAGGCTGCTGGGGCTAGAAAAGAAAAGAAACATGATAAAGAGAAACAGAAGAAACATCAAGATCAAATGTCTCTTGACACTGAAAACGAAAAGCAGTACAGACCTGCACGACTCAAGAGTTTTGTTGGTGGAAATCTCAAGCTTAAGGAGAAGGCTCCTGATGAGGAGGTTGCTGGGGTTAGGAACCAAGAGAAGCATAAGAAACATCAAGTTCAAATGTCTCTCGTCACTGAAAATGAAAAGGACCTCGCAGCTGGTAGCAAGGGGAAAGAATCAGATGCTCATCAAGAAACATACTGTGATGATTTTTTAGGCAAAGAAGTGCCAGTGAAAGAAGTAGAAGGCAAAAGAGGGGGTTGTGCCGTTTGTGGCAAGTGGGATCACTATAATTACCGTTGCCCATGCCTAAAATATTTTCGCAAAGGTACTGAAATTGGCGTCCAGTATGAAACAATATGTCGGGGTTGTCATCGGATTGGAGAAGTGTGCTGTCCTAAGAAGGGAGGATATGCTCTTTTGAAGGAGTGTGGGTACTGTTACGATATCGGCCACTGGGAGTGGGAGGACTGTGAACAGTGTAGTAGACCCAAAGATAAAGTCTATAAGAAACCTGAATTCCTTAGTGACAAAGAGGAAGAGGATCCAGAATCCATTATCCACCCTGAAATAATCTTTTATCCACCCAGTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1754

Protein Analysis

254

Amino Acids

28.97

Weight (kDa)

7.87

Isoelectric Point (pI)

40.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000653)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02040 FvH4_6g20312 FvH4_7g29590 FvH4_7g29800 FvH4_7g30370 FvH4_7g30400 FvH4_7g30400 FvH4_7g30400 FvH4_7g30610
rosa_chinensis	RchiOBHm_Chr1g0362141 RchiOBHm_Chr1g0378631 RchiOBHm_Chr1g0378661 RchiOBHm_Chr1g0378841 RchiOBHm_Chr2g0149561
rosa_laevigata	RLG00000002620 RLG00000002622 RLG00000002629 RLG00000003999 RLG00000013563 RLG00000020408 RLG00000020410 RLG00000020421 RLG00000026416 RLG00000026417 RLG00000027654
rosa_multiflora	Rmu_sc0006867.1_g000011 Rmu_sc0006867.1_g000015 Rmu_sc0008712.1_g000008 Rmu_sc0014005.1_g000010
rosa_roxburghii	Rroxscaffold_3G00243880 Rroxscaffold_4G00280330 Rroxscaffold_4G00280340 Rroxscaffold_4G00280410 Rroxscaffold_7G00186160
rosa_rugosa	Rorug01G0302500 Rorug01G0302600 Rorug01G0410200 Rorug01G0410300 Rorug02G0404800.1 Rorug02G0404900 Rorug02G0412300 Rorug07G0158200.1
rosa_samantha	Rh1AG304700 Rh1AG431600 Rh1AG431700 Rh1AG432200 Rh1AG432300 Rh1BG263900 Rh1BG389900 Rh1BG390100 Rh1BG390900 Rh1BG424800 Rh1CG402300 Rh1CG403200 Rh1CG403300 Rh1CG403600 Rh1DG293900 Rh1DG420100 Rh1DG421100 Rh1DG421200 Rh1DG422000 Rh1DG457600 Rh2AG463400 Rh2BG476500 Rh2BG484800 Rh2CG450200 Rh2DG485200 Rh2DG494000 Rh6CG183000 Rh6DG174400 Rh7AG294000 Rh7CG314000 Rh7DG296800 Rh7DG306300
rosa_wichuraiana	Rw1G037740 Rw1G037820 Rw2G038540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	181
AccB7I	CCANNNNNTGG	1 cut(s)	755
AccI	GTMKAC	1 cut(s)	652
AclWI	GGATC	3 cut(s)	456, 704, 717
AcoI	YGGCCR	1 cut(s)	616
AcsI	RAATTY	1 cut(s)	683
AcyI	GRCGYC	1 cut(s)	507
AdeI	CACNNNGTG	1 cut(s)	755
AfaI	GTAC	3 cut(s)	167, 496, 602
AfiI	CCNNNNNNNGG	2 cut(s)	569, 755
AflII	CTTAAG	1 cut(s)	212
AgsI	TTSAA	2 cut(s)	284, 589
AluBI	AGCT	2 cut(s)	211, 323
AluI	AGCT	2 cut(s)	211, 323
Alw26I	GTCTC	2 cut(s)	144, 294
AlwI	GGATC	3 cut(s)	456, 704, 717
AoxI	GGCC	1 cut(s)	616
ApeKI	GCWGC	2 cut(s)	74, 320
ApoI	RAATTY	1 cut(s)	683
ArsI	GACNNNNNNTTYG	2 cut(s)	651, 683
AspS9I	GGNCC	1 cut(s)	313
AvaII	GGWCC	1 cut(s)	313
BamHI	GGATCC	1 cut(s)	709
BbvI	GCAGC	2 cut(s)	61, 332
BceAI	ACGGC	1 cut(s)	416
BcoDI	GTCTC	2 cut(s)	144, 294
BfaI	CTAG	1 cut(s)	84
BfrI	CTTAAG	1 cut(s)	212
BfuAI	ACCTGC	1 cut(s)	181
BisI	GCNGC	2 cut(s)	75, 321
BlsI	GCNGC	2 cut(s)	76, 322
Bme18I	GGWCC	1 cut(s)	313
BmgT120I	GGNCC	1 cut(s)	313
BmiI	GGNNCC	4 cut(s)	60, 225, 254, 711
BmrI	ACTGGG	2 cut(s)	631, 747
BmsI	GCATC	1 cut(s)	337
BmuI	ACTGGG	2 cut(s)	631, 747
BpuEI	CTTGAG	2 cut(s)	167, 191
BsaBI	GATNNNNATC	1 cut(s)	351
BsaHI	GRCGYC	1 cut(s)	507
BsaXI	ACNNNNNCTCC	2 cut(s)	584, 614
Bsc4I	CCNNNNNNNGG	2 cut(s)	569, 755
Bse1I	ACTGG	4 cut(s)	395, 511, 626, 753
Bse8I	GATNNNNATC	1 cut(s)	351
BseJI	GATNNNNATC	1 cut(s)	351
BseLI	CCNNNNNNNGG	2 cut(s)	569, 755
BseNI	ACTGG	4 cut(s)	395, 511, 626, 753
BseRI	GAGGAG	1 cut(s)	248
BseXI	GCAGC	2 cut(s)	61, 332
BseYI	CCCAGC	2 cut(s)	77, 242
BsgI	GTGCAG	1 cut(s)	159
BshFI	GGCC	1 cut(s)	618
BslI	CCNNNNNNNGG	2 cut(s)	569, 755
BsmAI	GTCTC	2 cut(s)	144, 294
BsnI	GGCC	1 cut(s)	618
Bsp143I	GATC	3 cut(s)	130, 448, 709
BspANI	GGCC	1 cut(s)	618
BspLI	GGNNCC	4 cut(s)	60, 225, 254, 711
BspMI	ACCTGC	1 cut(s)	181
BspPI	GGATC	3 cut(s)	456, 704, 717
BspTI	CTTAAG	1 cut(s)	212
BsrI	ACTGG	4 cut(s)	395, 511, 626, 753
BssMI	GATC	3 cut(s)	130, 448, 709
BssNI	GRCGYC	1 cut(s)	507
Bst4CI	ACNGT	5 cut(s)	368, 464, 605, 638, 645
Bst6I	CTCTTC	1 cut(s)	699
BstACI	GRCGYC	1 cut(s)	507
BstAFI	CTTAAG	1 cut(s)	212
BstDEI	CTNAG	2 cut(s)	564, 689
BstKTI	GATC	3 cut(s)	133, 451, 712
BstMAI	GTCTC	2 cut(s)	144, 294
BstMBI	GATC	3 cut(s)	130, 448, 709
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstV1I	GCAGC	2 cut(s)	61, 332
BstX2I	RGATCY	1 cut(s)	709
BstYI	RGATCY	1 cut(s)	709
BsuRI	GGCC	1 cut(s)	618
BtsIMutI	CAGTG	6 cut(s)	147, 297, 402, 619, 650, 760
BveI	ACCTGC	1 cut(s)	181
Cfr13I	GGNCC	1 cut(s)	313
CseI	GACGC	1 cut(s)	496
Csp6I	GTAC	3 cut(s)	166, 495, 601
CviAII	CATG	3 cut(s)	23, 101, 471
CviJI	RGCY	7 cut(s)	59, 74, 83, 211, 224, 323, 618
CviKI_1	RGCY	7 cut(s)	59, 74, 83, 211, 224, 323, 618
CviQI	GTAC	3 cut(s)	166, 495, 601
DdeI	CTNAG	2 cut(s)	564, 689
DpnI	GATC	3 cut(s)	132, 450, 711
DpnII	GATC	3 cut(s)	130, 448, 709
DraIII	CACNNNGTG	1 cut(s)	755
EaeI	YGGCCR	1 cut(s)	616
Eam1104I	CTCTTC	1 cut(s)	699
EarI	CTCTTC	1 cut(s)	699
Eco32I	GATATC	1 cut(s)	613
Eco47I	GGWCC	1 cut(s)	313
EcoO109I	RGGNCCY	1 cut(s)	313
EcoRI	GAATTC	1 cut(s)	683
EcoRV	GATATC	1 cut(s)	613
FaeI	CATG	3 cut(s)	26, 104, 474
FatI	CATG	3 cut(s)	22, 100, 470
FblI	GTMKAC	1 cut(s)	652
Fnu4HI	GCNGC	2 cut(s)	75, 321
Fsp4HI	GCNGC	2 cut(s)	75, 321
FspBI	CTAG	1 cut(s)	84
GluI	GCNGC	2 cut(s)	75, 321
GsaI	CCCAGC	2 cut(s)	81, 246
HaeIII	GGCC	1 cut(s)	618
HgaI	GACGC	1 cut(s)	496
Hin1I	GRCGYC	1 cut(s)	507
Hin1II	CATG	3 cut(s)	26, 104, 474
HindIII	AAGCTT	1 cut(s)	209
HinfI	GANTC	3 cut(s)	180, 341, 716
Hpy166II	GTNNAC	2 cut(s)	641, 653
Hpy188I	TCNGA	2 cut(s)	346, 543
Hpy188III	TCNNGA	7 cut(s)	62, 128, 143, 184, 227, 356, 713
Hpy8I	GTNNAC	2 cut(s)	641, 653
HpyAV	CCTTC	4 cut(s)	214, 404, 562, 583
HpyCH4III	ACNGT	5 cut(s)	368, 464, 605, 638, 645
HpyCH4V	TGCA	2 cut(s)	20, 176
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
HpyF3I	CTNAG	2 cut(s)	564, 689
Hsp92I	GRCGYC	1 cut(s)	507
Hsp92II	CATG	3 cut(s)	26, 104, 474
Kzo9I	GATC	3 cut(s)	130, 448, 709
LmnI	GCTCC	2 cut(s)	64, 229
Lsp1109I	GCAGC	2 cut(s)	61, 332
LweI	GCATC	1 cut(s)	337
MaeI	CTAG	1 cut(s)	84
MaeIII	GTNAC	3 cut(s)	295, 605, 692
MalI	GATC	3 cut(s)	132, 450, 711
MboI	GATC	3 cut(s)	130, 448, 709
MboII	GAAGA	2 cut(s)	130, 716
MflI	RGATCY	1 cut(s)	709
MluCI	AATT	3 cut(s)	457, 501, 683
MlyI	GAGTC	1 cut(s)	174
MnlI	CCTC	9 cut(s)	64, 226, 229, 326, 413, 566, 625, 694, 700
MseI	TTAA	1 cut(s)	213
MslI	CAYNNNNRTG	1 cut(s)	27
MspA1I	CMGCKG	1 cut(s)	323
MspCI	CTTAAG	1 cut(s)	212
MwoI	GCNNNNNNNGC	1 cut(s)	80
NdeII	GATC	3 cut(s)	130, 448, 709
NlaIII	CATG	3 cut(s)	26, 104, 474
NlaIV	GGNNCC	4 cut(s)	60, 225, 254, 711
NmuCI	GTSAC	2 cut(s)	295, 692
PfeI	GAWTC	2 cut(s)	341, 716
PflMI	CCANNNNNTGG	1 cut(s)	755
PkrI	GCNGC	2 cut(s)	76, 322
PleI	GAGTC	1 cut(s)	174
PpsI	GAGTC	1 cut(s)	174
PpuMI	RGGWCCY	1 cut(s)	313
Psp5II	RGGWCCY	1 cut(s)	313
PspFI	CCCAGC	2 cut(s)	77, 242
PspN4I	GGNNCC	4 cut(s)	60, 225, 254, 711
PspPI	GGNCC	1 cut(s)	313
PspPPI	RGGWCCY	1 cut(s)	313
PsuI	RGATCY	1 cut(s)	709
PvuII	CAGCTG	1 cut(s)	323
RsaI	GTAC	3 cut(s)	167, 496, 602
RsaNI	GTAC	3 cut(s)	166, 495, 601
RseI	CAYNNNNRTG	1 cut(s)	27
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	2 cut(s)	75, 321
Sau3AI	GATC	3 cut(s)	130, 448, 709
Sau96I	GGNCC	1 cut(s)	313
SchI	GAGTC	1 cut(s)	174
SetI	ASST	7 cut(s)	175, 213, 240, 318, 325, 496, 682
SfaNI	GCATC	1 cut(s)	337
SinI	GGWCC	1 cut(s)	313
SmiMI	CAYNNNNRTG	1 cut(s)	27
SmlI	CTYRAG	3 cut(s)	182, 206, 212
SmoI	CTYRAG	3 cut(s)	182, 206, 212
Sse9I	AATT	3 cut(s)	457, 501, 683
SspI	AATATT	1 cut(s)	482
SspMI	CTAG	1 cut(s)	84
TaaI	ACNGT	5 cut(s)	368, 464, 605, 638, 645
TasI	AATT	3 cut(s)	457, 501, 683
TatI	WGTACW	1 cut(s)	165
TfiI	GAWTC	2 cut(s)	341, 716
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TscAI	CASTG	6 cut(s)	154, 304, 402, 626, 650, 760
TseFI	GTSAC	2 cut(s)	295, 692
TseI	GCWGC	2 cut(s)	74, 320
Tsp45I	GTSAC	2 cut(s)	295, 692
TspDTI	ATGAA	3 cut(s)	17, 321, 531
TspRI	CASTG	6 cut(s)	154, 304, 402, 626, 650, 760
Van91I	CCANNNNNTGG	1 cut(s)	755
Vha464I	CTTAAG	1 cut(s)	212
VpaK11BI	GGWCC	1 cut(s)	313
XapI	RAATTY	1 cut(s)	683
XmiI	GTMKAC	1 cut(s)	652
XspI	CTAG	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.