FvH4_7g30610

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000653
Physical Location & Seq
Reverse (-)
22252259 .. 22254283
2025 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g30610.t1

Sequence Viewer

Length: 1128 bp
ATGAAAGGAGGTTTCGCCCAAAAAACACCGATGAAAGAAAGGAAACAGCTCCCAACTAACAAAGTAGTAAACAAAGTTAAGAAAAAGTTCAGATCACCGGTTATCTGCAAGGACTTCGAGGAGCTCCTGAGGCTGATGAAGAGGGATCGCCCTGTCCTAAAAGACATAGATCCATCTGCCTGTCGTGTCTGCGCCGGCTCAGTTGATCACATTGGTAGAGAATGCCCATGCCTAGATAGAATCCCACCAGGCGCAGTTCTAGGACCTCTATATGACTATGTTTGCAATGGTTGTGGCAAAATTGGAGAGAACTGCTGTTCCAAGGGAGCATATGCTGTTCGCAGGAGGTGTGCTTGTCCCTGTGATGATCACTGGTACTGGGAGCGCAGGTGCTCCAAGGACTGGCAAAGACCTGACATTATAGCCGAGCTCCCGTCCATCGAGGAACTTGAGGAGAAGGTTATGAAGAAAAATAACAAGGTCAAGGACGAGTGTCAAGATGAGGATGATGACTATGAGGATGAGTATCGTGAGGGCTACCCTGGGTACATCCTTTATGGTGACAGGAAGCAAAAGGTCAAATATCCAGATTTGGAAGAAGACAAAGAGGAGCTCCTGAGATTGATGAAGAGGATTCGACCTGTTGTTGAAGACATAGATCCATACGTCTGTCCTGTTTGCGCTGGCACAGTTGATCACTTCGCTAGAGAATGCCCATGCCTAGATAGAATCCCACCAGGCGCAGAACTAGGACCTCAATATGACAAGGTTTGCATTGGTTGTGGCAATATTGGAGAGATCTGCTGTTCCAAGGGAGCATATGCTATTCGCATGAAGTGTTGTTGTGGCTATGGTGGTCACTGGTACTGGGAGGGCAGGTGCCCCAAGGACTGGCGCAGACCCTCCATTATAACCCAGCTCCCGTCCATCCAGGAACTTGAAGAGGAGGTATTGAAGAAAAAGAATAAGAACAAGGAAGAGGACGAGGTTATGGTCAATGTTCGGAAGGACATCAAGTACGTGGATGAGGTTATGGTCGAGGATGATAAGAATTCGATCAAGGAAGTCCCGTCCACCGAACAATCCCTCGAGAAATCTCTGCAGGCATGTTGCTTCACCGGCCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

376

Amino Acids

43.14

Weight (kDa)

6.03

Isoelectric Point (pI)

55.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 911
AarI CACCTGC 2 cut(s) 378, 867
Acc36I ACCTGC 2 cut(s) 378, 867
AccB1I GGYRCC 1 cut(s) 879
AccB7I CCANNNNNTGG 2 cut(s) 402, 891
AclWI GGATC 3 cut(s) 153, 164, 653
AcsI RAATTY 1 cut(s) 1051
AfaI GTAC 4 cut(s) 377, 548, 866, 1019
AfiI CCNNNNNNNGG 2 cut(s) 402, 891
AgeI ACCGGT 1 cut(s) 97
AgsI TTSAA 3 cut(s) 650, 941, 955
AjnI CCWGG 4 cut(s) 247, 541, 736, 930
AloI GAACNNNNNNTCC 2 cut(s) 302, 334
AluBI AGCT 5 cut(s) 49, 124, 430, 613, 919
AluI AGCT 5 cut(s) 49, 124, 430, 613, 919
Alw21I GWGCWC 4 cut(s) 126, 395, 432, 615
AlwI GGATC 3 cut(s) 153, 164, 653
Ama87I CYCGRG 1 cut(s) 1088
AoxI GGCC 1 cut(s) 1120
ApoI RAATTY 1 cut(s) 1051
AsiGI ACCGGT 1 cut(s) 97
Asp700I GAANNNNTTC 1 cut(s) 86
AspLEI GCGC 6 cut(s) 194, 254, 387, 683, 743, 897
AspS9I GGNCC 3 cut(s) 263, 752, 1121
AsuHPI GGTGA 3 cut(s) 87, 572, 1108
AvaI CYCGRG 1 cut(s) 1088
AvaII GGWCC 2 cut(s) 263, 752
AxyI CCTNAGG 1 cut(s) 128
BaeGI GKGCMC 1 cut(s) 884
BanI GGYRCC 1 cut(s) 879
BanII GRGCYC 3 cut(s) 126, 432, 615
BbsI GAAGAC 2 cut(s) 606, 657
Bbv12I GWGCWC 4 cut(s) 126, 395, 432, 615
BccI CCATC 3 cut(s) 181, 446, 935
BcgI CGANNNNNNTGC 2 cut(s) 97, 131
BciT130I CCWGG 4 cut(s) 249, 543, 738, 932
BclI TGATCA 3 cut(s) 205, 367, 694
BfaI CTAG 6 cut(s) 233, 260, 705, 722, 749, 1126
BfmI CTRYAG 1 cut(s) 1100
BfuAI ACCTGC 2 cut(s) 378, 867
BglII AGATCT 1 cut(s) 798
Bme1390I CCNGG 4 cut(s) 249, 543, 738, 932
Bme18I GGWCC 2 cut(s) 263, 752
BmeT110I CYCGRG 1 cut(s) 1088
BmgT120I GGNCC 3 cut(s) 263, 752, 1121
BmiI GGNNCC 2 cut(s) 881, 1123
BmrFI CCNGG 4 cut(s) 249, 543, 738, 932
BmrI ACTGGG 2 cut(s) 388, 877
BmuI ACTGGG 2 cut(s) 388, 877
BoxI GACNNNNGTC 1 cut(s) 492
BpiI GAAGAC 2 cut(s) 606, 657
BpuEI CTTGAG 1 cut(s) 470
BsaAI YACGTR 1 cut(s) 1021
BsaBI GATNNNNATC 1 cut(s) 525
BsaJI CCNNGG 6 cut(s) 321, 396, 541, 542, 810, 885
BsaWI WCCGGW 1 cut(s) 97
BsaXI ACNNNNNCTCC 4 cut(s) 374, 404, 863, 893
Bsc4I CCNNNNNNNGG 2 cut(s) 402, 891
Bse118I RCCGGY 3 cut(s) 97, 194, 1118
Bse1I ACTGG 6 cut(s) 377, 383, 407, 866, 872, 896
Bse21I CCTNAGG 1 cut(s) 128
Bse3DI GCAATG 1 cut(s) 292
Bse8I GATNNNNATC 1 cut(s) 525
BseBI CCWGG 4 cut(s) 249, 543, 738, 932
BseDI CCNNGG 6 cut(s) 321, 396, 541, 542, 810, 885
BseGI GGATG 6 cut(s) 511, 526, 549, 927, 1030, 1048
BseJI GATNNNNATC 1 cut(s) 525
BseLI CCNNNNNNNGG 2 cut(s) 402, 891
BseMI GCAATG 1 cut(s) 292
BseMII CTCAG 3 cut(s) 119, 213, 608
BseNI ACTGG 6 cut(s) 377, 383, 407, 866, 872, 896
BseRI GAGGAG 4 cut(s) 134, 467, 623, 959
BseSI GKGCMC 1 cut(s) 884
BseYI CCCAGC 1 cut(s) 915
BshFI GGCC 1 cut(s) 1122
BshNI GGYRCC 1 cut(s) 879
BshTI ACCGGT 1 cut(s) 97
BsiHKAI GWGCWC 4 cut(s) 126, 395, 432, 615
BsiHKCI CYCGRG 1 cut(s) 1088
BsiSI CCGG 3 cut(s) 98, 195, 1119
BslFI GGGAC 2 cut(s) 342, 1052
BslI CCNNNNNNNGG 2 cut(s) 402, 891
BsmFI GGGAC 2 cut(s) 342, 1052
BsmI GAATGC 2 cut(s) 227, 716
BsnI GGCC 1 cut(s) 1122
BsoBI CYCGRG 1 cut(s) 1088
Bsp1286I GDGCHC 5 cut(s) 126, 395, 432, 615, 884
Bsp143I GATC 9 cut(s) 92, 145, 169, 205, 367, 658, 694, 798, 1056
BspANI GGCC 1 cut(s) 1122
BspCNI CTCAG 3 cut(s) 120, 212, 609
BspLI GGNNCC 2 cut(s) 881, 1123
BspMAI CTGCAG 1 cut(s) 1104
BspMI ACCTGC 2 cut(s) 378, 867
BspPI GGATC 3 cut(s) 153, 164, 653
BspT107I GGYRCC 1 cut(s) 879
BsrDI GCAATG 1 cut(s) 292
BsrFI RCCGGY 3 cut(s) 97, 194, 1118
BsrI ACTGG 6 cut(s) 377, 383, 407, 866, 872, 896
BssAI RCCGGY 3 cut(s) 97, 194, 1118
BssECI CCNNGG 6 cut(s) 321, 396, 541, 542, 810, 885
BssMI GATC 9 cut(s) 92, 145, 169, 205, 367, 658, 694, 798, 1056
BssT1I CCWWGG 4 cut(s) 321, 396, 810, 885
Bst2UI CCWGG 4 cut(s) 249, 543, 738, 932
Bst4CI ACNGT 1 cut(s) 691
Bst6I CTCTTC 4 cut(s) 134, 623, 936, 972
BstBAI YACGTR 1 cut(s) 1021
BstC8I GCNNGC 3 cut(s) 196, 685, 1104
BstDEI CTNAG 3 cut(s) 128, 199, 617
BstF5I GGATG 6 cut(s) 511, 526, 549, 927, 1030, 1048
BstHHI GCGC 6 cut(s) 194, 254, 387, 683, 743, 897
BstKTI GATC 9 cut(s) 95, 148, 172, 208, 370, 661, 697, 801, 1059
BstMBI GATC 9 cut(s) 92, 145, 169, 205, 367, 658, 694, 798, 1056
BstMWI GCNNNNNNNGC 2 cut(s) 130, 1119
BstNI CCWGG 4 cut(s) 249, 543, 738, 932
BstNSI RCATGY 1 cut(s) 1110
BstPAI GACNNNNGTC 1 cut(s) 492
BstSCI CCNGG 4 cut(s) 247, 541, 736, 930
BstSFI CTRYAG 1 cut(s) 1100
BstSLI GKGCMC 1 cut(s) 884
BstV2I GAAGAC 2 cut(s) 606, 657
BstX2I RGATCY 3 cut(s) 169, 658, 798
BstYI RGATCY 3 cut(s) 169, 658, 798
Bsu36I CCTNAGG 1 cut(s) 128
BsuRI GGCC 1 cut(s) 1122
BtsCI GGATG 6 cut(s) 511, 526, 549, 927, 1030, 1048
BtsIMutI CAGTG 2 cut(s) 370, 859
BveI ACCTGC 2 cut(s) 378, 867
Cac8I GCNNGC 3 cut(s) 196, 685, 1104
CfoI GCGC 6 cut(s) 194, 254, 387, 683, 743, 897
Cfr10I RCCGGY 3 cut(s) 97, 194, 1118
Cfr13I GGNCC 3 cut(s) 263, 752, 1121
Csp6I GTAC 4 cut(s) 376, 547, 865, 1018
CspAI ACCGGT 1 cut(s) 97
CspCI CAANNNNNGTGG 2 cut(s) 274, 309
CviAII CATG 4 cut(s) 228, 717, 832, 1107
CviQI GTAC 4 cut(s) 376, 547, 865, 1018
DdeI CTNAG 3 cut(s) 128, 199, 617
DpnI GATC 9 cut(s) 94, 147, 171, 207, 369, 660, 696, 800, 1058
DpnII GATC 9 cut(s) 92, 145, 169, 205, 367, 658, 694, 798, 1056
Eam1104I CTCTTC 4 cut(s) 134, 623, 936, 972
EarI CTCTTC 4 cut(s) 134, 623, 936, 972
Ecl136II GAGCTC 3 cut(s) 124, 430, 613
Eco130I CCWWGG 4 cut(s) 321, 396, 810, 885
Eco24I GRGCYC 3 cut(s) 126, 432, 615
Eco47I GGWCC 2 cut(s) 263, 752
Eco53kI GAGCTC 3 cut(s) 124, 430, 613
Eco81I CCTNAGG 1 cut(s) 128
Eco88I CYCGRG 1 cut(s) 1088
EcoICRI GAGCTC 3 cut(s) 124, 430, 613
EcoO109I RGGNCCY 2 cut(s) 263, 752
EcoRI GAATTC 1 cut(s) 1051
EcoRII CCWGG 4 cut(s) 247, 541, 736, 930
EcoT14I CCWWGG 4 cut(s) 321, 396, 810, 885
EcoT38I GRGCYC 3 cut(s) 126, 432, 615
ErhI CCWWGG 4 cut(s) 321, 396, 810, 885
FaeI CATG 4 cut(s) 231, 720, 835, 1110
FaqI GGGAC 2 cut(s) 342, 1052
FatI CATG 4 cut(s) 227, 716, 831, 1106
FauNDI CATATG 2 cut(s) 331, 820
FbaI TGATCA 3 cut(s) 205, 367, 694
FokI GGATG 6 cut(s) 518, 533, 536, 914, 1037, 1055
FriOI GRGCYC 3 cut(s) 126, 432, 615
FspBI CTAG 6 cut(s) 233, 260, 705, 722, 749, 1126
GlaI GCGC 6 cut(s) 193, 253, 386, 682, 742, 896
GsaI CCCAGC 1 cut(s) 919
HaeIII GGCC 1 cut(s) 1122
HapII CCGG 3 cut(s) 98, 195, 1119
HhaI GCGC 6 cut(s) 194, 254, 387, 683, 743, 897
Hin1II CATG 4 cut(s) 231, 720, 835, 1110
Hin6I GCGC 6 cut(s) 192, 252, 385, 681, 741, 895
HinP1I GCGC 6 cut(s) 192, 252, 385, 681, 741, 895
HinfI GANTC 3 cut(s) 240, 634, 729
HpaII CCGG 3 cut(s) 98, 195, 1119
HphI GGTGA 3 cut(s) 87, 572, 1108
Hpy166II GTNNAC 2 cut(s) 70, 1074
Hpy188I TCNGA 2 cut(s) 92, 1005
Hpy188III TCNNGA 6 cut(s) 127, 497, 530, 587, 616, 1090
Hpy8I GTNNAC 2 cut(s) 70, 1074
HpyAV CCTTC 2 cut(s) 451, 1000
HpyCH4III ACNGT 1 cut(s) 691
HpyCH4IV ACGT 2 cut(s) 666, 1020
HpyCH4V TGCA 4 cut(s) 108, 285, 774, 1102
HpyF10VI GCNNNNNNNGC 2 cut(s) 130, 1119
HpyF3I CTNAG 3 cut(s) 128, 199, 617
HpySE526I ACGT 2 cut(s) 666, 1020
Hsp92II CATG 4 cut(s) 231, 720, 835, 1110
HspAI GCGC 6 cut(s) 192, 252, 385, 681, 741, 895
KroI GCCGGC 1 cut(s) 194
KroNI GCCGGC 1 cut(s) 196
Ksp22I TGATCA 3 cut(s) 205, 367, 694
Kzo9I GATC 9 cut(s) 92, 145, 169, 205, 367, 658, 694, 798, 1056
MaeI CTAG 6 cut(s) 233, 260, 705, 722, 749, 1126
MaeII ACGT 2 cut(s) 666, 1020
MaeIII GTNAC 2 cut(s) 560, 857
MalI GATC 9 cut(s) 94, 147, 171, 207, 369, 660, 696, 800, 1058
MboI GATC 9 cut(s) 92, 145, 169, 205, 367, 658, 694, 798, 1056
MboII GAAGA 9 cut(s) 151, 478, 608, 611, 640, 662, 953, 967, 989
MflI RGATCY 3 cut(s) 169, 658, 798
MhlI GDGCHC 5 cut(s) 126, 395, 432, 615, 884
MluCI AATT 2 cut(s) 300, 1051
MroNI GCCGGC 1 cut(s) 194
MroXI GAANNNNTTC 1 cut(s) 86
MseI TTAA 1 cut(s) 78
MspI CCGG 3 cut(s) 98, 195, 1119
MspR9I CCNGG 4 cut(s) 249, 543, 738, 932
Mva1269I GAATGC 2 cut(s) 227, 716
MvaI CCWGG 4 cut(s) 249, 543, 738, 932
MwoI GCNNNNNNNGC 2 cut(s) 130, 1119
NaeI GCCGGC 1 cut(s) 196
NdeI CATATG 2 cut(s) 331, 820
NdeII GATC 9 cut(s) 92, 145, 169, 205, 367, 658, 694, 798, 1056
NgoMIV GCCGGC 1 cut(s) 194
NlaIII CATG 4 cut(s) 231, 720, 835, 1110
NlaIV GGNNCC 2 cut(s) 881, 1123
NmeAIII GCCGAG 1 cut(s) 451
NmuCI GTSAC 2 cut(s) 560, 857
NspI RCATGY 1 cut(s) 1110
PaeR7I CTCGAG 1 cut(s) 1088
PaqCI CACCTGC 2 cut(s) 378, 867
PasI CCCWGGG 1 cut(s) 542
PctI GAATGC 2 cut(s) 227, 716
PdiI GCCGGC 1 cut(s) 196
PdmI GAANNNNTTC 1 cut(s) 86
PfeI GAWTC 3 cut(s) 240, 634, 729
PflMI CCANNNNNTGG 2 cut(s) 402, 891
PfoI TCCNGGA 1 cut(s) 930
PinAI ACCGGT 1 cut(s) 97
Ppu21I YACGTR 1 cut(s) 1021
PpuMI RGGWCCY 2 cut(s) 263, 752
PshAI GACNNNNGTC 1 cut(s) 492
PsiI TTATAA 1 cut(s) 911
Psp124BI GAGCTC 3 cut(s) 126, 432, 615
Psp5II RGGWCCY 2 cut(s) 263, 752
Psp6I CCWGG 4 cut(s) 247, 541, 736, 930
PspFI CCCAGC 1 cut(s) 915
PspGI CCWGG 4 cut(s) 247, 541, 736, 930
PspN4I GGNNCC 2 cut(s) 881, 1123
PspPI GGNCC 3 cut(s) 263, 752, 1121
PspPPI RGGWCCY 2 cut(s) 263, 752
PstI CTGCAG 1 cut(s) 1104
PsuI RGATCY 3 cut(s) 169, 658, 798
RsaI GTAC 4 cut(s) 377, 548, 866, 1019
RsaNI GTAC 4 cut(s) 376, 547, 865, 1018
SacI GAGCTC 3 cut(s) 126, 432, 615
SaqAI TTAA 1 cut(s) 78
Sau3AI GATC 9 cut(s) 92, 145, 169, 205, 367, 658, 694, 798, 1056
Sau96I GGNCC 3 cut(s) 263, 752, 1121
ScrFI CCNGG 4 cut(s) 249, 543, 738, 932
SduI GDGCHC 5 cut(s) 126, 395, 432, 615, 884
SfcI CTRYAG 1 cut(s) 1100
Sfr274I CTCGAG 1 cut(s) 1088
SinI GGWCC 2 cut(s) 263, 752
SlaI CTCGAG 1 cut(s) 1088
SmlI CTYRAG 2 cut(s) 449, 1088
SmoI CTYRAG 2 cut(s) 449, 1088
Sse9I AATT 2 cut(s) 300, 1051
SspI AATATT 1 cut(s) 790
SspMI CTAG 6 cut(s) 233, 260, 705, 722, 749, 1126
SstI GAGCTC 3 cut(s) 126, 432, 615
StyD4I CCNGG 4 cut(s) 247, 541, 736, 930
StyI CCWWGG 4 cut(s) 321, 396, 810, 885
TaaI ACNGT 1 cut(s) 691
TaiI ACGT 2 cut(s) 669, 1023
TaqI TCGA 6 cut(s) 117, 441, 637, 1038, 1055, 1089
TasI AATT 2 cut(s) 300, 1051
TfiI GAWTC 3 cut(s) 240, 634, 729
Tru1I TTAA 1 cut(s) 78
Tru9I TTAA 1 cut(s) 78
TscAI CASTG 2 cut(s) 377, 866
TseFI GTSAC 2 cut(s) 560, 857
Tsp45I GTSAC 2 cut(s) 560, 857
TspDTI ATGAA 6 cut(s) 17, 47, 152, 479, 641, 848
TspRI CASTG 2 cut(s) 377, 866
Van91I CCANNNNNTGG 2 cut(s) 402, 891
VpaK11BI GGWCC 2 cut(s) 263, 752
XapI RAATTY 1 cut(s) 1051
XceI RCATGY 1 cut(s) 1110
XhoI CTCGAG 1 cut(s) 1088
XmnI GAANNNNTTC 1 cut(s) 86
XspI CTAG 6 cut(s) 233, 260, 705, 722, 749, 1126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.