RchiOBHm_Chr2g0149561

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000653
Physical Location & Seq
Forward (+)
67384288 .. 67386692
2405 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51896

Sequence Viewer

Length: 666 bp
ATGGCTCCGACAAGGAGGAAGAGGACCAAGCAGAGGGCTGGTTTTACCAGCATCAAGATCAACAAGGAGGAACAAAAACAAGTTGAGGCCTCGGAGCGTGAGATTGCGGATCTGAATCTGGGCGACAAGAGCAAGACGCATGGTAGCAAGGGGCAAGAATCAGAGGGTTCTGGAGACCTTAAAGGTGATGACTATTTGGGCGAGGATGTGTCAGGTAGCAAGGGGAAAGAATCAAAGGATCATCTAAGAACTGCCCGTGATGACTTTTTGGGCATAGATATTCCAGTGTCATGTAGAAGGAAATTAGCGGGTTGTGCCTGTTGTGGCGAGTATGATCACCTTAATGTAACCTGCCCATTCCTAAAATATATTCCTGATGGCGCTAAAATTGGCCGTTGCTTTGAGACAATATGTCGGGGTTGTCACCATATTGGAAAGGTGTGCTGTGTTAAGAGGGGGAAGTCTGTGGGAGGATATGCTATGCTGAAGAGGTGTTGTCATTGTTTATGTATTGGTCACTGGGAGTGGGAGGACTGTGAAGATTGTCCTAGACCCAAGGACGTAGTCTATGAGAAACTTGAATACTTAGATGGGGATGGGATTTCCTCAGAGTCTGAGGATGAGGATGCATTTCGACCCCGTAATAGGGCTCCATGGGGACTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

221

Amino Acids

24.7

Weight (kDa)

7.0

Isoelectric Point (pI)

43.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 359
AciI CCGC 2 cut(s) 107, 308
AclWI GGATC 2 cut(s) 117, 246
AcoI YGGCCR 1 cut(s) 391
AcuI CTGAAG 1 cut(s) 506
AfiI CCNNNNNNNGG 3 cut(s) 33, 645, 646
AgsI TTSAA 1 cut(s) 581
AhdI GACNNNNNGTC 1 cut(s) 411
Alw26I GTCTC 2 cut(s) 168, 398
AlwI GGATC 2 cut(s) 117, 246
AlwNI CAGNNNCTG 1 cut(s) 614
AoxI GGCC 2 cut(s) 87, 391
AspLEI GCGC 1 cut(s) 383
AspS9I GGNCC 1 cut(s) 24
AsuHPI GGTGA 3 cut(s) 197, 329, 416
AvaII GGWCC 1 cut(s) 24
BanII GRGCYC 1 cut(s) 652
BccI CCATC 3 cut(s) 371, 584, 590
BceAI ACGGC 1 cut(s) 378
BclI TGATCA 1 cut(s) 334
BcoDI GTCTC 2 cut(s) 168, 398
BfaI CTAG 1 cut(s) 549
BfoI RGCGCY 1 cut(s) 384
BfuAI ACCTGC 1 cut(s) 359
Bme18I GGWCC 1 cut(s) 24
BmeRI GACNNNNNGTC 1 cut(s) 411
BmgT120I GGNCC 1 cut(s) 24
BmiI GGNNCC 2 cut(s) 6, 651
BmrI ACTGGG 1 cut(s) 529
BmsI GCATC 2 cut(s) 60, 616
BmuI ACTGGG 1 cut(s) 529
BpmI CTGGAG 1 cut(s) 192
BsaBI GATNNNNATC 1 cut(s) 114
BsaI GGTCTC 1 cut(s) 168
BsaJI CCNNGG 3 cut(s) 90, 555, 653
Bsc4I CCNNNNNNNGG 3 cut(s) 33, 645, 646
Bse1I ACTGG 2 cut(s) 284, 524
Bse8I GATNNNNATC 1 cut(s) 114
BseDI CCNNGG 3 cut(s) 90, 555, 653
BseGI GGATG 4 cut(s) 211, 601, 625, 631
BseJI GATNNNNATC 1 cut(s) 114
BseLI CCNNNNNNNGG 3 cut(s) 33, 645, 646
BseMII CTCAG 2 cut(s) 606, 621
BseNI ACTGG 2 cut(s) 284, 524
BshFI GGCC 2 cut(s) 89, 393
BslI CCNNNNNNNGG 3 cut(s) 33, 645, 646
BsmAI GTCTC 2 cut(s) 168, 398
BsnI GGCC 2 cut(s) 89, 393
Bso31I GGTCTC 1 cut(s) 168
Bsp1286I GDGCHC 1 cut(s) 652
Bsp143I GATC 4 cut(s) 57, 109, 238, 334
Bsp19I CCATGG 1 cut(s) 653
BspACI CCGC 2 cut(s) 107, 308
BspANI GGCC 2 cut(s) 89, 393
BspCNI CTCAG 2 cut(s) 607, 620
BspLI GGNNCC 2 cut(s) 6, 651
BspMI ACCTGC 1 cut(s) 359
BspPI GGATC 2 cut(s) 117, 246
BspTNI GGTCTC 1 cut(s) 168
BsrI ACTGG 2 cut(s) 284, 524
BssECI CCNNGG 3 cut(s) 90, 555, 653
BssMI GATC 4 cut(s) 57, 109, 238, 334
BssT1I CCWWGG 2 cut(s) 555, 653
Bst4CI ACNGT 1 cut(s) 536
Bst6I CTCTTC 2 cut(s) 14, 482
BstDEI CTNAG 4 cut(s) 245, 586, 607, 615
BstDSI CCRYGG 1 cut(s) 653
BstF5I GGATG 4 cut(s) 211, 601, 625, 631
BstH2I RGCGCY 1 cut(s) 384
BstHHI GCGC 1 cut(s) 383
BstKTI GATC 4 cut(s) 60, 112, 241, 337
BstMAI GTCTC 2 cut(s) 168, 398
BstMBI GATC 4 cut(s) 57, 109, 238, 334
BstMWI GCNNNNNNNGC 2 cut(s) 129, 314
BstX2I RGATCY 1 cut(s) 109
BstYI RGATCY 1 cut(s) 109
BsuRI GGCC 2 cut(s) 89, 393
BtgI CCRYGG 1 cut(s) 653
BtsCI GGATG 4 cut(s) 211, 601, 625, 631
BtsIMutI CAGTG 2 cut(s) 291, 517
BveI ACCTGC 1 cut(s) 359
CaiI CAGNNNCTG 1 cut(s) 614
CfoI GCGC 1 cut(s) 383
Cfr13I GGNCC 1 cut(s) 24
CseI GACGC 1 cut(s) 145
CviAII CATG 3 cut(s) 140, 291, 654
CviJI RGCY 5 cut(s) 5, 38, 89, 393, 650
CviKI_1 RGCY 5 cut(s) 5, 38, 89, 393, 650
DdeI CTNAG 4 cut(s) 245, 586, 607, 615
DpnI GATC 4 cut(s) 59, 111, 240, 336
DpnII GATC 4 cut(s) 57, 109, 238, 334
DriI GACNNNNNGTC 1 cut(s) 411
EaeI YGGCCR 1 cut(s) 391
Eam1104I CTCTTC 2 cut(s) 14, 482
Eam1105I GACNNNNNGTC 1 cut(s) 411
EarI CTCTTC 2 cut(s) 14, 482
Eco130I CCWWGG 2 cut(s) 555, 653
Eco147I AGGCCT 1 cut(s) 89
Eco24I GRGCYC 1 cut(s) 652
Eco31I GGTCTC 1 cut(s) 168
Eco47I GGWCC 1 cut(s) 24
Eco57I CTGAAG 1 cut(s) 506
EcoT14I CCWWGG 2 cut(s) 555, 653
EcoT22I ATGCAT 1 cut(s) 631
EcoT38I GRGCYC 1 cut(s) 652
ErhI CCWWGG 2 cut(s) 555, 653
FaeI CATG 3 cut(s) 143, 294, 657
FatI CATG 3 cut(s) 139, 290, 653
FauI CCCGC 1 cut(s) 301
FbaI TGATCA 1 cut(s) 334
FokI GGATG 4 cut(s) 218, 608, 632, 638
FriOI GRGCYC 1 cut(s) 652
FspBI CTAG 1 cut(s) 549
GlaI GCGC 1 cut(s) 382
GsuI CTGGAG 1 cut(s) 192
HaeII RGCGCY 1 cut(s) 384
HaeIII GGCC 2 cut(s) 89, 393
HgaI GACGC 1 cut(s) 145
HhaI GCGC 1 cut(s) 383
Hin1II CATG 3 cut(s) 143, 294, 657
Hin6I GCGC 1 cut(s) 381
HinP1I GCGC 1 cut(s) 381
HinfI GANTC 4 cut(s) 115, 158, 230, 611
HphI GGTGA 3 cut(s) 197, 329, 416
Hpy188I TCNGA 6 cut(s) 9, 94, 114, 163, 610, 616
Hpy188III TCNNGA 3 cut(s) 55, 171, 374
HpyAV CCTTC 1 cut(s) 291
HpyCH4III ACNGT 1 cut(s) 536
HpyCH4IV ACGT 1 cut(s) 561
HpyCH4V TGCA 1 cut(s) 629
HpyF10VI GCNNNNNNNGC 2 cut(s) 129, 314
HpyF3I CTNAG 4 cut(s) 245, 586, 607, 615
HpySE526I ACGT 1 cut(s) 561
Hsp92II CATG 3 cut(s) 143, 294, 657
HspAI GCGC 1 cut(s) 381
Ksp22I TGATCA 1 cut(s) 334
Kzo9I GATC 4 cut(s) 57, 109, 238, 334
LmnI GCTCC 3 cut(s) 10, 94, 655
LweI GCATC 2 cut(s) 60, 616
MaeI CTAG 1 cut(s) 549
MaeII ACGT 1 cut(s) 561
MaeIII GTNAC 3 cut(s) 346, 422, 515
MalI GATC 4 cut(s) 59, 111, 240, 336
MboI GATC 4 cut(s) 57, 109, 238, 334
MboII GAAGA 3 cut(s) 31, 499, 551
MflI RGATCY 1 cut(s) 109
MhlI GDGCHC 1 cut(s) 652
MluCI AATT 2 cut(s) 302, 387
MlyI GAGTC 1 cut(s) 620
MmeI TCCRAC 1 cut(s) 32
Mph1103I ATGCAT 1 cut(s) 631
MseI TTAA 3 cut(s) 180, 342, 450
MslI CAYNNNNRTG 1 cut(s) 342
MwoI GCNNNNNNNGC 2 cut(s) 129, 314
NcoI CCATGG 1 cut(s) 653
NdeII GATC 4 cut(s) 57, 109, 238, 334
NlaIII CATG 3 cut(s) 143, 294, 657
NlaIV GGNNCC 2 cut(s) 6, 651
NmuCI GTSAC 2 cut(s) 422, 515
NsiI ATGCAT 1 cut(s) 631
PceI AGGCCT 1 cut(s) 89
PfeI GAWTC 3 cut(s) 115, 158, 230
PflFI GACNNNGTC 1 cut(s) 563
PleI GAGTC 1 cut(s) 619
PpsI GAGTC 1 cut(s) 619
PspN4I GGNNCC 2 cut(s) 6, 651
PspPI GGNCC 1 cut(s) 24
PstNI CAGNNNCTG 1 cut(s) 614
PsuI RGATCY 1 cut(s) 109
PsyI GACNNNGTC 1 cut(s) 563
RseI CAYNNNNRTG 1 cut(s) 342
SaqAI TTAA 3 cut(s) 180, 342, 450
Sau3AI GATC 4 cut(s) 57, 109, 238, 334
Sau96I GGNCC 1 cut(s) 24
SchI GAGTC 1 cut(s) 620
SduI GDGCHC 1 cut(s) 652
SetI ASST 8 cut(s) 180, 187, 217, 342, 353, 441, 494, 564
SfaNI GCATC 2 cut(s) 60, 616
SinI GGWCC 1 cut(s) 24
SmiMI CAYNNNNRTG 1 cut(s) 342
Sse9I AATT 2 cut(s) 302, 387
SseBI AGGCCT 1 cut(s) 89
SsiI CCGC 2 cut(s) 107, 308
SspMI CTAG 1 cut(s) 549
StuI AGGCCT 1 cut(s) 89
StyI CCWWGG 2 cut(s) 555, 653
TaaI ACNGT 1 cut(s) 536
TaiI ACGT 1 cut(s) 564
TaqI TCGA 1 cut(s) 634
TasI AATT 2 cut(s) 302, 387
TfiI GAWTC 3 cut(s) 115, 158, 230
Tru1I TTAA 3 cut(s) 180, 342, 450
Tru9I TTAA 3 cut(s) 180, 342, 450
TscAI CASTG 2 cut(s) 291, 524
TseFI GTSAC 2 cut(s) 422, 515
Tsp45I GTSAC 2 cut(s) 422, 515
TspRI CASTG 2 cut(s) 291, 524
Tth111I GACNNNGTC 1 cut(s) 563
VpaK11BI GGWCC 1 cut(s) 24
XspI CTAG 1 cut(s) 549
Zsp2I ATGCAT 1 cut(s) 631
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.