Rmu_sc0006867.1_g000015

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006867.1
OG0000653
Physical Location & Seq
Forward (+)
79908 .. 82112
2205 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006867.1_g000015.1.cds

Sequence Viewer

Length: 594 bp
atggctccgacaaggaggaagaggaccaagcagagggctggttttaccagcatcaagatcaacaaggaggaacaaaaacaagttgaggcctcggagcgtgagattgcggatctgaatctgggtgacaagagcaagactcatggtagcaaggggcaagaatcagagggttctggagaccttaaaggtgatgactatttgggcgaggatgtgtcagtgtcatgtagaaggaaattagcgggttgtgcctgttgtggtgagtatgatcaccttaatgtaacctgcccattcctaaaatatattcctgatggcgctaaaattggctgttgctttgagacaatatgtcggggttgtcaccatattggaaaggtgtgctgtgttaagagggggaagtctgtgggaggatatgctatgctgaagaggtgttgtcattgtttatgtattggtcactgggagtgggaggactgtgaagattgtcctagacccaaggacgtcgtctatgagaaacttgaatacttagatggggatgggatttcctcagagtctgaggatgaggatgcatttcgaccccgtaatagtgctccatggggactataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

197

Amino Acids

21.94

Weight (kDa)

6.32

Isoelectric Point (pI)

46.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 492
Acc36I ACCTGC 1 cut(s) 287
AciI CCGC 2 cut(s) 107, 236
AclWI GGATC 1 cut(s) 117
AcuI CTGAAG 1 cut(s) 434
AcyI GRCGYC 1 cut(s) 489
AfiI CCNNNNNNNGG 1 cut(s) 33
AgsI TTSAA 1 cut(s) 509
AhdI GACNNNNNGTC 1 cut(s) 339
Alw21I GWGCWC 1 cut(s) 580
Alw26I GTCTC 2 cut(s) 168, 326
AlwI GGATC 1 cut(s) 117
AlwNI CAGNNNCTG 1 cut(s) 542
AoxI GGCC 1 cut(s) 87
AspLEI GCGC 1 cut(s) 311
AspS9I GGNCC 1 cut(s) 24
AsuHPI GGTGA 5 cut(s) 134, 197, 257, 266, 344
AvaII GGWCC 1 cut(s) 24
Bbv12I GWGCWC 1 cut(s) 580
BccI CCATC 3 cut(s) 299, 512, 518
BclI TGATCA 1 cut(s) 262
BcoDI GTCTC 2 cut(s) 168, 326
BfaI CTAG 1 cut(s) 477
BfoI RGCGCY 1 cut(s) 312
BfuAI ACCTGC 1 cut(s) 287
Bme18I GGWCC 1 cut(s) 24
BmeRI GACNNNNNGTC 1 cut(s) 339
BmgT120I GGNCC 1 cut(s) 24
BmiI GGNNCC 1 cut(s) 6
BmrI ACTGGG 1 cut(s) 457
BmsI GCATC 2 cut(s) 60, 544
BmuI ACTGGG 1 cut(s) 457
BplI GAGNNNNNCTC 2 cut(s) 121, 153
BpmI CTGGAG 1 cut(s) 192
BsaBI GATNNNNATC 1 cut(s) 114
BsaHI GRCGYC 1 cut(s) 489
BsaI GGTCTC 1 cut(s) 168
BsaJI CCNNGG 3 cut(s) 90, 483, 581
Bsc4I CCNNNNNNNGG 1 cut(s) 33
Bse1I ACTGG 1 cut(s) 452
Bse8I GATNNNNATC 1 cut(s) 114
BseDI CCNNGG 3 cut(s) 90, 483, 581
BseGI GGATG 4 cut(s) 211, 529, 553, 559
BseJI GATNNNNATC 1 cut(s) 114
BseLI CCNNNNNNNGG 1 cut(s) 33
BseMII CTCAG 2 cut(s) 534, 549
BseNI ACTGG 1 cut(s) 452
BshFI GGCC 1 cut(s) 89
BsiHKAI GWGCWC 1 cut(s) 580
BslI CCNNNNNNNGG 1 cut(s) 33
BsmAI GTCTC 2 cut(s) 168, 326
BsnI GGCC 1 cut(s) 89
Bso31I GGTCTC 1 cut(s) 168
Bsp1286I GDGCHC 1 cut(s) 580
Bsp143I GATC 3 cut(s) 57, 109, 262
Bsp19I CCATGG 1 cut(s) 581
BspACI CCGC 2 cut(s) 107, 236
BspANI GGCC 1 cut(s) 89
BspCNI CTCAG 2 cut(s) 535, 548
BspLI GGNNCC 1 cut(s) 6
BspMI ACCTGC 1 cut(s) 287
BspPI GGATC 1 cut(s) 117
BspTNI GGTCTC 1 cut(s) 168
BsrI ACTGG 1 cut(s) 452
BssECI CCNNGG 3 cut(s) 90, 483, 581
BssMI GATC 3 cut(s) 57, 109, 262
BssNI GRCGYC 1 cut(s) 489
BssT1I CCWWGG 2 cut(s) 483, 581
Bst4CI ACNGT 1 cut(s) 464
Bst6I CTCTTC 2 cut(s) 14, 410
BstACI GRCGYC 1 cut(s) 489
BstDEI CTNAG 3 cut(s) 514, 535, 543
BstDSI CCRYGG 1 cut(s) 581
BstF5I GGATG 4 cut(s) 211, 529, 553, 559
BstH2I RGCGCY 1 cut(s) 312
BstHHI GCGC 1 cut(s) 311
BstKTI GATC 3 cut(s) 60, 112, 265
BstMAI GTCTC 2 cut(s) 168, 326
BstMBI GATC 3 cut(s) 57, 109, 262
BstMWI GCNNNNNNNGC 1 cut(s) 242
BstX2I RGATCY 1 cut(s) 109
BstYI RGATCY 1 cut(s) 109
BsuRI GGCC 1 cut(s) 89
BtgI CCRYGG 1 cut(s) 581
BtsCI GGATG 4 cut(s) 211, 529, 553, 559
BtsIMutI CAGTG 2 cut(s) 219, 445
BveI ACCTGC 1 cut(s) 287
CaiI CAGNNNCTG 1 cut(s) 542
CfoI GCGC 1 cut(s) 311
Cfr13I GGNCC 1 cut(s) 24
CviAII CATG 3 cut(s) 140, 219, 582
CviJI RGCY 4 cut(s) 5, 38, 89, 321
CviKI_1 RGCY 4 cut(s) 5, 38, 89, 321
DdeI CTNAG 3 cut(s) 514, 535, 543
DpnI GATC 3 cut(s) 59, 111, 264
DpnII GATC 3 cut(s) 57, 109, 262
DriI GACNNNNNGTC 1 cut(s) 339
Eam1104I CTCTTC 2 cut(s) 14, 410
Eam1105I GACNNNNNGTC 1 cut(s) 339
EarI CTCTTC 2 cut(s) 14, 410
Eco130I CCWWGG 2 cut(s) 483, 581
Eco147I AGGCCT 1 cut(s) 89
Eco31I GGTCTC 1 cut(s) 168
Eco47I GGWCC 1 cut(s) 24
Eco57I CTGAAG 1 cut(s) 434
EcoT14I CCWWGG 2 cut(s) 483, 581
EcoT22I ATGCAT 1 cut(s) 559
ErhI CCWWGG 2 cut(s) 483, 581
FaeI CATG 3 cut(s) 143, 222, 585
FatI CATG 3 cut(s) 139, 218, 581
FauI CCCGC 1 cut(s) 229
FbaI TGATCA 1 cut(s) 262
FokI GGATG 4 cut(s) 218, 536, 560, 566
FspBI CTAG 1 cut(s) 477
GlaI GCGC 1 cut(s) 310
GsuI CTGGAG 1 cut(s) 192
HaeII RGCGCY 1 cut(s) 312
HaeIII GGCC 1 cut(s) 89
HhaI GCGC 1 cut(s) 311
Hin1I GRCGYC 1 cut(s) 489
Hin1II CATG 3 cut(s) 143, 222, 585
Hin6I GCGC 1 cut(s) 309
HinP1I GCGC 1 cut(s) 309
HinfI GANTC 4 cut(s) 115, 136, 158, 539
HphI GGTGA 5 cut(s) 134, 197, 257, 266, 344
Hpy188I TCNGA 6 cut(s) 9, 94, 114, 163, 538, 544
Hpy188III TCNNGA 3 cut(s) 55, 171, 302
Hpy99I CGWCG 1 cut(s) 494
HpyAV CCTTC 1 cut(s) 219
HpyCH4III ACNGT 1 cut(s) 464
HpyCH4IV ACGT 1 cut(s) 489
HpyCH4V TGCA 1 cut(s) 557
HpyF10VI GCNNNNNNNGC 1 cut(s) 242
HpyF3I CTNAG 3 cut(s) 514, 535, 543
HpySE526I ACGT 1 cut(s) 489
Hsp92I GRCGYC 1 cut(s) 489
Hsp92II CATG 3 cut(s) 143, 222, 585
HspAI GCGC 1 cut(s) 309
Ksp22I TGATCA 1 cut(s) 262
Kzo9I GATC 3 cut(s) 57, 109, 262
LmnI GCTCC 3 cut(s) 10, 94, 583
LpnPI CCDG 8 cut(s) 24, 61, 104, 156, 259, 292, 315, 433
LweI GCATC 2 cut(s) 60, 544
MaeI CTAG 1 cut(s) 477
MaeII ACGT 1 cut(s) 489
MaeIII GTNAC 4 cut(s) 122, 274, 350, 443
MalI GATC 3 cut(s) 59, 111, 264
MboI GATC 3 cut(s) 57, 109, 262
MboII GAAGA 3 cut(s) 31, 427, 479
MflI RGATCY 1 cut(s) 109
MhlI GDGCHC 1 cut(s) 580
MluCI AATT 2 cut(s) 230, 315
MlyI GAGTC 2 cut(s) 130, 548
MmeI TCCRAC 1 cut(s) 32
Mph1103I ATGCAT 1 cut(s) 559
MseI TTAA 3 cut(s) 180, 270, 378
MslI CAYNNNNRTG 1 cut(s) 270
MwoI GCNNNNNNNGC 1 cut(s) 242
NcoI CCATGG 1 cut(s) 581
NdeII GATC 3 cut(s) 57, 109, 262
NlaIII CATG 3 cut(s) 143, 222, 585
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 3 cut(s) 122, 350, 443
NsiI ATGCAT 1 cut(s) 559
PceI AGGCCT 1 cut(s) 89
PfeI GAWTC 2 cut(s) 115, 158
PflFI GACNNNGTC 1 cut(s) 491
PleI GAGTC 2 cut(s) 130, 547
PpsI GAGTC 2 cut(s) 130, 547
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 24
PstNI CAGNNNCTG 1 cut(s) 542
PsuI RGATCY 1 cut(s) 109
PsyI GACNNNGTC 1 cut(s) 491
RseI CAYNNNNRTG 1 cut(s) 270
SaqAI TTAA 3 cut(s) 180, 270, 378
Sau3AI GATC 3 cut(s) 57, 109, 262
Sau96I GGNCC 1 cut(s) 24
SchI GAGTC 2 cut(s) 130, 548
SduI GDGCHC 1 cut(s) 580
SetI ASST 7 cut(s) 180, 187, 270, 281, 369, 422, 492
SfaNI GCATC 2 cut(s) 60, 544
SinI GGWCC 1 cut(s) 24
SmiMI CAYNNNNRTG 1 cut(s) 270
Sse9I AATT 2 cut(s) 230, 315
SseBI AGGCCT 1 cut(s) 89
SsiI CCGC 2 cut(s) 107, 236
SspMI CTAG 1 cut(s) 477
StuI AGGCCT 1 cut(s) 89
StyI CCWWGG 2 cut(s) 483, 581
TaaI ACNGT 1 cut(s) 464
TaiI ACGT 1 cut(s) 492
TaqI TCGA 1 cut(s) 562
TasI AATT 2 cut(s) 230, 315
TfiI GAWTC 2 cut(s) 115, 158
Tru1I TTAA 3 cut(s) 180, 270, 378
Tru9I TTAA 3 cut(s) 180, 270, 378
TscAI CASTG 2 cut(s) 219, 452
TseFI GTSAC 3 cut(s) 122, 350, 443
Tsp45I GTSAC 3 cut(s) 122, 350, 443
TspRI CASTG 2 cut(s) 219, 452
Tth111I GACNNNGTC 1 cut(s) 491
VpaK11BI GGWCC 1 cut(s) 24
XspI CTAG 1 cut(s) 477
ZraI GACGTC 1 cut(s) 490
Zsp2I ATGCAT 1 cut(s) 559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.