Rroxscaffold_4G00280330

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000653
Physical Location & Seq
Forward (+)
2898479 .. 2903691
5213 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00280330.1

Sequence Viewer

Length: 297 bp
ATGCTGAAAGATGAGACCAAGACTGGTGTTATGGAATGGGAACCTATGGGATCAGATCCCTTGTATCATCAGGTTGAGAAGAAGCAGCCGGGGATCAAATGGTTGAATCTTTGGGACAGCACTAAAGAATCGGAGGACGAAGAATCTGAGGACCAGGAAACCAAGGACAAGGATCTGAATCTGGCTGTTGAGAACTGCTCTGATGGTAAACAAAAATCTAAACTTTGTCGGATCAAAACAAATGATGCTGGAGTGTCTTATGTCCGTGTGGGCGACTGTGTATGTGAAAGACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

11.24

Weight (kDa)

4.72

Isoelectric Point (pI)

29.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 5 cut(s) 50, 58, 101, 180, 239
AgsI TTSAA 1 cut(s) 106
AjnI CCWGG 1 cut(s) 153
Alw26I GTCTC 1 cut(s) 8
AlwI GGATC 5 cut(s) 50, 58, 101, 180, 239
ApeKI GCWGC 1 cut(s) 85
AspS9I GGNCC 1 cut(s) 151
AsuC2I CCSGG 1 cut(s) 90
AvaII GGWCC 1 cut(s) 151
BbvI GCAGC 1 cut(s) 97
BccI CCATC 1 cut(s) 197
BciT130I CCWGG 1 cut(s) 155
BcnI CCSGG 1 cut(s) 90
BcoDI GTCTC 1 cut(s) 8
BisI GCNGC 1 cut(s) 86
BlsI GCNGC 1 cut(s) 87
Bme1390I CCNGG 2 cut(s) 90, 155
Bme18I GGWCC 1 cut(s) 151
BmgT120I GGNCC 1 cut(s) 151
BmiI GGNNCC 1 cut(s) 42
BmrFI CCNGG 2 cut(s) 90, 155
BmsI GCATC 1 cut(s) 235
BplI GAGNNNNNCTC 2 cut(s) 182, 214
BpmI CTGGAG 1 cut(s) 270
BpuMI CCSGG 1 cut(s) 90
BsaBI GATNNNNATC 1 cut(s) 177
BsaI GGTCTC 1 cut(s) 8
BsaJI CCNNGG 2 cut(s) 89, 162
Bse1I ACTGG 1 cut(s) 28
Bse8I GATNNNNATC 1 cut(s) 177
BseBI CCWGG 1 cut(s) 155
BseDI CCNNGG 2 cut(s) 89, 162
BseJI GATNNNNATC 1 cut(s) 177
BseMII CTCAG 1 cut(s) 138
BseNI ACTGG 1 cut(s) 28
BseXI GCAGC 1 cut(s) 97
BsiSI CCGG 1 cut(s) 89
BslFI GGGAC 1 cut(s) 128
BsmAI GTCTC 1 cut(s) 8
BsmFI GGGAC 1 cut(s) 128
Bso31I GGTCTC 1 cut(s) 8
Bsp143I GATC 5 cut(s) 50, 55, 93, 172, 231
BspCNI CTCAG 1 cut(s) 139
BspLI GGNNCC 1 cut(s) 42
BspPI GGATC 5 cut(s) 50, 58, 101, 180, 239
BspTNI GGTCTC 1 cut(s) 8
BsrI ACTGG 1 cut(s) 28
BssECI CCNNGG 2 cut(s) 89, 162
BssMI GATC 5 cut(s) 50, 55, 93, 172, 231
BssT1I CCWWGG 1 cut(s) 162
Bst2UI CCWGG 1 cut(s) 155
Bst4CI ACNGT 1 cut(s) 278
BstDEI CTNAG 1 cut(s) 147
BstKTI GATC 5 cut(s) 53, 58, 96, 175, 234
BstMAI GTCTC 1 cut(s) 8
BstMBI GATC 5 cut(s) 50, 55, 93, 172, 231
BstNI CCWGG 1 cut(s) 155
BstSCI CCNGG 2 cut(s) 88, 153
BstV1I GCAGC 1 cut(s) 97
BstX2I RGATCY 2 cut(s) 55, 172
BstYI RGATCY 2 cut(s) 55, 172
Cfr13I GGNCC 1 cut(s) 151
CviJI RGCY 2 cut(s) 88, 185
CviKI_1 RGCY 2 cut(s) 88, 185
DdeI CTNAG 1 cut(s) 147
DpnI GATC 5 cut(s) 52, 57, 95, 174, 233
DpnII GATC 5 cut(s) 50, 55, 93, 172, 231
Eco130I CCWWGG 1 cut(s) 162
Eco31I GGTCTC 1 cut(s) 8
Eco47I GGWCC 1 cut(s) 151
EcoRII CCWGG 1 cut(s) 153
EcoT14I CCWWGG 1 cut(s) 162
ErhI CCWWGG 1 cut(s) 162
FaiI YATR 4 cut(s) 32, 47, 261, 283
FaqI GGGAC 1 cut(s) 128
Fnu4HI GCNGC 1 cut(s) 86
Fsp4HI GCNGC 1 cut(s) 86
GluI GCNGC 1 cut(s) 86
GsuI CTGGAG 1 cut(s) 270
HapII CCGG 1 cut(s) 89
HinfI GANTC 5 cut(s) 106, 128, 143, 178, 291
HpaII CCGG 1 cut(s) 89
Hpy166II GTNNAC 1 cut(s) 209
Hpy188I TCNGA 7 cut(s) 55, 133, 148, 177, 202, 231, 296
Hpy8I GTNNAC 1 cut(s) 209
HpyCH4III ACNGT 1 cut(s) 278
HpyF3I CTNAG 1 cut(s) 147
Kzo9I GATC 5 cut(s) 50, 55, 93, 172, 231
LpnPI CCDG 7 cut(s) 9, 56, 102, 140, 167, 167, 234
Lsp1109I GCAGC 1 cut(s) 97
LweI GCATC 1 cut(s) 235
MalI GATC 5 cut(s) 52, 57, 95, 174, 233
MboI GATC 5 cut(s) 50, 55, 93, 172, 231
MboII GAAGA 2 cut(s) 91, 152
MflI RGATCY 2 cut(s) 55, 172
MlyI GAGTC 1 cut(s) 285
MmeI TCCRAC 1 cut(s) 209
MnlI CCTC 2 cut(s) 127, 142
MspI CCGG 1 cut(s) 89
MspR9I CCNGG 2 cut(s) 90, 155
MvaI CCWGG 1 cut(s) 155
NciI CCSGG 1 cut(s) 90
NdeII GATC 5 cut(s) 50, 55, 93, 172, 231
NlaIV GGNNCC 1 cut(s) 42
PfeI GAWTC 4 cut(s) 106, 128, 143, 178
PkrI GCNGC 1 cut(s) 87
PleI GAGTC 1 cut(s) 285
PpsI GAGTC 1 cut(s) 285
Psp6I CCWGG 1 cut(s) 153
PspGI CCWGG 1 cut(s) 153
PspN4I GGNNCC 1 cut(s) 42
PspPI GGNCC 1 cut(s) 151
PsuI RGATCY 2 cut(s) 55, 172
SatI GCNGC 1 cut(s) 86
Sau3AI GATC 5 cut(s) 50, 55, 93, 172, 231
Sau96I GGNCC 1 cut(s) 151
SchI GAGTC 1 cut(s) 285
ScrFI CCNGG 2 cut(s) 90, 155
SetI ASST 2 cut(s) 46, 75
SfaNI GCATC 1 cut(s) 235
SinI GGWCC 1 cut(s) 151
StyD4I CCNGG 2 cut(s) 88, 153
StyI CCWWGG 1 cut(s) 162
TaaI ACNGT 1 cut(s) 278
TfiI GAWTC 4 cut(s) 106, 128, 143, 178
TseI GCWGC 1 cut(s) 85
TspGWI ACGGA 1 cut(s) 254
VpaK11BI GGWCC 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.