Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000653

Physical Location & Seq

Genomic Coordinates Reverse (-)

51572992 .. 51573697

Gene Structure 706 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0410200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGGAACCTGTTGTTCTTCTTGTATGTTTTGTGGACATAATGGTGATGAGGGTCAACATGATGTTCATGAAGCCGGTGGGAATGTGCACTTTATAAAGACCATGGATGGTTGGGAGGCGAAGTTATCAGAAGCAATTGAGGAAGACAAACTTGTTGTTGCAAATTTTGGTGCATCATGGTGTAATCCTTCTAAAAGTATTGCACCGGCCTACTCTGAGCTTGCAGCTAAACATCCTTCAATCTTATTTCTAACCTTGGATGTCGATGACCTCGCTGAGTTGAGTACTTCATGGGATATAAAAGCCACTCCAACATTTGTTTTTCTCAAAAATGGAAGACAAGTCGATACACTTGTTGGAGGAAACAAGCAGGAGCTCCAGAAGAAAATAACTGCTGTGGCTCAGTTAGCAACCATGTCTCGTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

142

Amino Acids

15.39

Weight (kDa)

5.25

Isoelectric Point (pI)

35.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	42 - 131	5.8e-20	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000653)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02040 FvH4_6g20312 FvH4_7g29590 FvH4_7g29800 FvH4_7g30370 FvH4_7g30400 FvH4_7g30400 FvH4_7g30400 FvH4_7g30610
rosa_chinensis	RchiOBHm_Chr1g0362141 RchiOBHm_Chr1g0378631 RchiOBHm_Chr1g0378661 RchiOBHm_Chr1g0378841 RchiOBHm_Chr2g0149561
rosa_laevigata	RLG00000002620 RLG00000002622 RLG00000002629 RLG00000003999 RLG00000013563 RLG00000020408 RLG00000020410 RLG00000020421 RLG00000026416 RLG00000026417 RLG00000027654
rosa_multiflora	Rmu_sc0006867.1_g000011 Rmu_sc0006867.1_g000015 Rmu_sc0008712.1_g000008 Rmu_sc0014005.1_g000010
rosa_roxburghii	Rroxscaffold_3G00243880 Rroxscaffold_4G00280330 Rroxscaffold_4G00280340 Rroxscaffold_4G00280410 Rroxscaffold_7G00186160
rosa_rugosa	Rorug01G0302500 Rorug01G0302600 Rorug01G0410200 Rorug01G0410300 Rorug02G0404800.1 Rorug02G0404900 Rorug02G0412300 Rorug07G0158200.1
rosa_samantha	Rh1AG304700 Rh1AG431600 Rh1AG431700 Rh1AG432200 Rh1AG432300 Rh1BG263900 Rh1BG389900 Rh1BG390100 Rh1BG390900 Rh1BG424800 Rh1CG402300 Rh1CG403200 Rh1CG403300 Rh1CG403600 Rh1DG293900 Rh1DG420100 Rh1DG421100 Rh1DG421200 Rh1DG422000 Rh1DG457600 Rh2AG463400 Rh2BG476500 Rh2BG484800 Rh2CG450200 Rh2DG485200 Rh2DG494000 Rh6CG183000 Rh6DG174400 Rh7AG294000 Rh7CG314000 Rh7DG296800 Rh7DG306300
rosa_wichuraiana	Rw1G037740 Rw1G037820 Rw2G038540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	95
AcsI	RAATTY	1 cut(s)	163
AfaI	GTAC	1 cut(s)	286
AgsI	TTSAA	1 cut(s)	240
AluBI	AGCT	3 cut(s)	220, 227, 376
AluI	AGCT	3 cut(s)	220, 227, 376
Alw21I	GWGCWC	2 cut(s)	90, 378
Alw26I	GTCTC	1 cut(s)	423
Alw44I	GTGCAC	1 cut(s)	86
AoxI	GGCC	1 cut(s)	207
ApaLI	GTGCAC	1 cut(s)	86
ApeKI	GCWGC	1 cut(s)	224
ApoI	RAATTY	1 cut(s)	163
AsuHPI	GGTGA	1 cut(s)	56
BaeGI	GKGCMC	1 cut(s)	90
BaeI	ACNNNNGTAYC	2 cut(s)	339, 372
BanII	GRGCYC	1 cut(s)	378
BbsI	GAAGAC	2 cut(s)	150, 343
Bbv12I	GWGCWC	2 cut(s)	90, 378
BbvI	GCAGC	1 cut(s)	236
BccI	CCATC	1 cut(s)	101
BcoDI	GTCTC	1 cut(s)	423
BisI	GCNGC	1 cut(s)	225
BlsI	GCNGC	1 cut(s)	226
BmcAI	AGTACT	1 cut(s)	286
BmiI	GGNNCC	1 cut(s)	7
BmsI	GCATC	1 cut(s)	182
BpiI	GAAGAC	2 cut(s)	150, 343
BpmI	CTGGAG	1 cut(s)	362
BsaJI	CCNNGG	2 cut(s)	102, 255
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bse118I	RCCGGY	2 cut(s)	74, 205
BseDI	CCNNGG	2 cut(s)	102, 255
BseGI	GGATG	3 cut(s)	112, 232, 265
BseMII	CTCAG	3 cut(s)	207, 267, 416
BseSI	GKGCMC	1 cut(s)	90
BseXI	GCAGC	1 cut(s)	236
BshFI	GGCC	1 cut(s)	209
BsiHKAI	GWGCWC	2 cut(s)	90, 378
BsiSI	CCGG	2 cut(s)	75, 206
BsmAI	GTCTC	1 cut(s)	423
BsnI	GGCC	1 cut(s)	209
Bsp1286I	GDGCHC	2 cut(s)	90, 378
Bsp19I	CCATGG	1 cut(s)	102
BspANI	GGCC	1 cut(s)	209
BspCNI	CTCAG	3 cut(s)	208, 268, 415
BspHI	TCATGA	1 cut(s)	67
BspLI	GGNNCC	1 cut(s)	7
BsrFI	RCCGGY	2 cut(s)	74, 205
BssAI	RCCGGY	2 cut(s)	74, 205
BssECI	CCNNGG	2 cut(s)	102, 255
BssT1I	CCWWGG	2 cut(s)	102, 255
BstC8I	GCNNGC	1 cut(s)	222
BstDEI	CTNAG	3 cut(s)	216, 276, 402
BstDSI	CCRYGG	1 cut(s)	102
BstF5I	GGATG	3 cut(s)	112, 232, 265
BstMAI	GTCTC	1 cut(s)	423
BstMWI	GCNNNNNNNGC	1 cut(s)	407
BstSLI	GKGCMC	1 cut(s)	90
BstV1I	GCAGC	1 cut(s)	236
BstV2I	GAAGAC	2 cut(s)	150, 343
BsuRI	GGCC	1 cut(s)	209
BtgI	CCRYGG	1 cut(s)	102
BtsCI	GGATG	3 cut(s)	112, 232, 265
Cac8I	GCNNGC	1 cut(s)	222
CciI	TCATGA	1 cut(s)	67
Cfr10I	RCCGGY	2 cut(s)	74, 205
Csp6I	GTAC	1 cut(s)	285
CviAII	CATG	6 cut(s)	59, 68, 103, 177, 291, 415
CviJI	RGCY	7 cut(s)	74, 209, 220, 227, 305, 376, 401
CviKI_1	RGCY	7 cut(s)	74, 209, 220, 227, 305, 376, 401
CviQI	GTAC	1 cut(s)	285
DdeI	CTNAG	3 cut(s)	216, 276, 402
Ecl136II	GAGCTC	1 cut(s)	376
Eco130I	CCWWGG	2 cut(s)	102, 255
Eco24I	GRGCYC	1 cut(s)	378
Eco53kI	GAGCTC	1 cut(s)	376
EcoICRI	GAGCTC	1 cut(s)	376
EcoT14I	CCWWGG	2 cut(s)	102, 255
EcoT38I	GRGCYC	1 cut(s)	378
ErhI	CCWWGG	2 cut(s)	102, 255
FaeI	CATG	6 cut(s)	62, 71, 106, 180, 294, 418
FalI	AAGNNNNNCTT	2 cut(s)	135, 167
FatI	CATG	6 cut(s)	58, 67, 102, 176, 290, 414
Fnu4HI	GCNGC	1 cut(s)	225
FokI	GGATG	3 cut(s)	119, 219, 272
FriOI	GRGCYC	1 cut(s)	378
Fsp4HI	GCNGC	1 cut(s)	225
GluI	GCNGC	1 cut(s)	225
GsuI	CTGGAG	1 cut(s)	362
HaeIII	GGCC	1 cut(s)	209
HapII	CCGG	2 cut(s)	75, 206
Hin1II	CATG	6 cut(s)	62, 71, 106, 180, 294, 418
HincII	GTYRAC	1 cut(s)	56
HindII	GTYRAC	1 cut(s)	56
HpaII	CCGG	2 cut(s)	75, 206
HphI	GGTGA	1 cut(s)	56
Hpy166II	GTNNAC	3 cut(s)	35, 56, 88
Hpy188I	TCNGA	2 cut(s)	130, 217
Hpy188III	TCNNGA	2 cut(s)	68, 379
Hpy8I	GTNNAC	3 cut(s)	35, 56, 88
HpyAV	CCTTC	2 cut(s)	198, 246
HpyCH4V	TGCA	5 cut(s)	88, 161, 173, 203, 224
HpyF10VI	GCNNNNNNNGC	1 cut(s)	407
HpyF3I	CTNAG	3 cut(s)	216, 276, 402
Hsp92II	CATG	6 cut(s)	62, 71, 106, 180, 294, 418
LmnI	GCTCC	2 cut(s)	373, 381
LpnPI	CCDG	5 cut(s)	22, 88, 219, 356, 392
Lsp1109I	GCAGC	1 cut(s)	236
LweI	GCATC	1 cut(s)	182
MboII	GAAGA	4 cut(s)	9, 155, 348, 394
MfeI	CAATTG	1 cut(s)	135
MhlI	GDGCHC	2 cut(s)	90, 378
MluCI	AATT	3 cut(s)	135, 163, 424
MmeI	TCCRAC	2 cut(s)	335, 337
MnlI	CCTC	5 cut(s)	43, 109, 133, 281, 353
MslI	CAYNNNNRTG	2 cut(s)	42, 178
MspI	CCGG	2 cut(s)	75, 206
MunI	CAATTG	1 cut(s)	135
MwoI	GCNNNNNNNGC	1 cut(s)	407
NcoI	CCATGG	1 cut(s)	102
NlaIII	CATG	6 cut(s)	62, 71, 106, 180, 294, 418
NlaIV	GGNNCC	1 cut(s)	7
PagI	TCATGA	1 cut(s)	67
PkrI	GCNGC	1 cut(s)	226
PsiI	TTATAA	1 cut(s)	95
Psp124BI	GAGCTC	1 cut(s)	378
PspN4I	GGNNCC	1 cut(s)	7
RsaI	GTAC	1 cut(s)	286
RsaNI	GTAC	1 cut(s)	285
RseI	CAYNNNNRTG	2 cut(s)	42, 178
SacI	GAGCTC	1 cut(s)	378
SatI	GCNGC	1 cut(s)	225
ScaI	AGTACT	1 cut(s)	286
SduI	GDGCHC	2 cut(s)	90, 378
SetI	ASST	6 cut(s)	11, 222, 229, 257, 273, 378
SfaNI	GCATC	1 cut(s)	182
SmiMI	CAYNNNNRTG	2 cut(s)	42, 178
Sse9I	AATT	3 cut(s)	135, 163, 424
SstI	GAGCTC	1 cut(s)	378
StyI	CCWWGG	2 cut(s)	102, 255
TaqI	TCGA	2 cut(s)	264, 345
TasI	AATT	3 cut(s)	135, 163, 424
TatI	WGTACW	1 cut(s)	284
TseI	GCWGC	1 cut(s)	224
TspDTI	ATGAA	3 cut(s)	56, 84, 279
VneI	GTGCAC	1 cut(s)	86
XapI	RAATTY	1 cut(s)	163
ZrmI	AGTACT	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.