Rh1AG431600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000653
Physical Location & Seq
Reverse (-)
65781258 .. 65782202
945 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG431600.1

Sequence Viewer

Length: 819 bp
ATGGAATGGGAACCTATGAGATTAAGAGATCCAGATCAACTCGAGAAGAAGCTGCCGGAAAATATCAAATTCCCTGAAGCCAAGTGGATGGATCTGGATCTGGCCGGCGAGAACATGACTCATGGTAGTAAGGGGGAACAATTAAGGGATTTGCTTTTGGGCACATTTCTGCGTGACCTCACAGCTATCGTAGCAGAATTGGGTTATGATTTTGATTTGGATTCCATTGATTATGTTTCCAACGAAGGGTCCGAGGACAAGGATCTGAATCTGCCGCCTGTTGACAAGTGTTGTGATGATGAACAATTTCCTAAACTCCAGAAGAAGCTGCCAGAAAATATCAAATTCCCTGAAATCAAGTGGGTGGATCTGGGCGAAGAATCCGAGGACGAGGATCTGAATCTGCCGCCTGTTGACAAGTGTTGTGATGATAAACAATTTTTAAAACTTTGTCAGATCAGAACAAATGATGCTGGAGTGTCTTATGTCCGTATGGGCGACTATGTGTATGTGAAAAAGGAAGAAAACAGTGAAGATGGATATAGTGAAGAAGAAGGAGAAGGTTGTCCCATTTGTTTCGACCTGGATCACCATAACAATAACTGCCCATGGCTTGTTAATGTTCCACCAGGTAAAACAGTTGGGCGTCTCTATGACATAGAATGCAAGGGTTGCGGTAAGTTGGGACCTGCATGCTGTTCTGAGGGAGGACGTGCTGTTCTCAGGAGGTGTGGTCGTTGTTTTGATTTTGGTCACTGGGGGGACGACTGCCCCAGCTATAAGTATATGCCCCTTTCGGCCTTCCCAGATTATCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

272

Amino Acids

31.0

Weight (kDa)

4.48

Isoelectric Point (pI)

52.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 697
AciI CCGC 3 cut(s) 275, 407, 675
AclWI GGATC 7 cut(s) 23, 99, 105, 270, 375, 402, 594
AcoI YGGCCR 1 cut(s) 102
AcsI RAATTY 2 cut(s) 68, 344
AcuI CTGAAG 1 cut(s) 96
AcyI GRCGYC 1 cut(s) 646
AfiI CCNNNNNNNGG 1 cut(s) 246
AjiI CACGTC 1 cut(s) 713
AjnI CCWGG 2 cut(s) 582, 628
AloI GAACNNNNNNTCC 2 cut(s) 702, 734
AluBI AGCT 4 cut(s) 52, 185, 328, 777
AluI AGCT 4 cut(s) 52, 185, 328, 777
Alw26I GTCTC 1 cut(s) 653
AlwI GGATC 7 cut(s) 23, 99, 105, 270, 375, 402, 594
Ama87I CYCGRG 1 cut(s) 41
AoxI GGCC 2 cut(s) 102, 798
ApeKI GCWGC 2 cut(s) 52, 328
ApoI RAATTY 2 cut(s) 68, 344
Asp700I GAANNNNTTC 1 cut(s) 306
AspS9I GGNCC 2 cut(s) 249, 686
AsuHPI GGTGA 1 cut(s) 581
AvaI CYCGRG 1 cut(s) 41
AvaII GGWCC 2 cut(s) 249, 686
BaeGI GKGCMC 1 cut(s) 164
BbvI GCAGC 2 cut(s) 39, 315
BccI CCATC 2 cut(s) 82, 530
BciT130I CCWGG 2 cut(s) 584, 630
BcoDI GTCTC 1 cut(s) 653
BfuAI ACCTGC 1 cut(s) 697
BisI GCNGC 4 cut(s) 53, 275, 329, 407
BlsI GCNGC 4 cut(s) 54, 276, 330, 408
Bme1390I CCNGG 2 cut(s) 584, 630
Bme18I GGWCC 2 cut(s) 249, 686
BmeT110I CYCGRG 1 cut(s) 41
BmgBI CACGTC 1 cut(s) 713
BmgT120I GGNCC 2 cut(s) 249, 686
BmiI GGNNCC 3 cut(s) 12, 250, 687
BmrFI CCNGG 2 cut(s) 584, 630
BmrI ACTGGG 1 cut(s) 766
BmsI GCATC 1 cut(s) 460
BmuI ACTGGG 1 cut(s) 766
BpmI CTGGAG 2 cut(s) 302, 495
BsaBI GATNNNNATC 4 cut(s) 33, 96, 267, 399
BsaHI GRCGYC 1 cut(s) 646
BsaJI CCNNGG 3 cut(s) 252, 384, 608
BsaXI ACNNNNNCTCC 2 cut(s) 718, 748
Bsc4I CCNNNNNNNGG 1 cut(s) 246
Bse118I RCCGGY 1 cut(s) 104
Bse1I ACTGG 1 cut(s) 761
Bse8I GATNNNNATC 4 cut(s) 33, 96, 267, 399
BseBI CCWGG 2 cut(s) 584, 630
BseDI CCNNGG 3 cut(s) 252, 384, 608
BseGI GGATG 1 cut(s) 93
BseJI GATNNNNATC 4 cut(s) 33, 96, 267, 399
BseLI CCNNNNNNNGG 1 cut(s) 246
BseMII CTCAG 2 cut(s) 693, 736
BseNI ACTGG 1 cut(s) 761
BseSI GKGCMC 1 cut(s) 164
BseXI GCAGC 2 cut(s) 39, 315
BseYI CCCAGC 1 cut(s) 773
BshFI GGCC 2 cut(s) 104, 800
BsiHKCI CYCGRG 1 cut(s) 41
BsiSI CCGG 2 cut(s) 56, 105
BslFI GGGAC 3 cut(s) 552, 699, 776
BslI CCNNNNNNNGG 1 cut(s) 246
BsmAI GTCTC 1 cut(s) 653
BsmBI CGTCTC 1 cut(s) 653
BsmFI GGGAC 3 cut(s) 552, 699, 776
BsmI GAATGC 1 cut(s) 668
BsnI GGCC 2 cut(s) 104, 800
BsoBI CYCGRG 1 cut(s) 41
Bsp1286I GDGCHC 1 cut(s) 164
Bsp143I GATC 9 cut(s) 28, 34, 91, 97, 262, 367, 394, 456, 586
Bsp19I CCATGG 1 cut(s) 608
BspACI CCGC 3 cut(s) 275, 407, 675
BspANI GGCC 2 cut(s) 104, 800
BspCNI CTCAG 2 cut(s) 694, 735
BspLI GGNNCC 3 cut(s) 12, 250, 687
BspMI ACCTGC 1 cut(s) 697
BspPI GGATC 7 cut(s) 23, 99, 105, 270, 375, 402, 594
BsrFI RCCGGY 1 cut(s) 104
BsrI ACTGG 1 cut(s) 761
BssAI RCCGGY 1 cut(s) 104
BssECI CCNNGG 3 cut(s) 252, 384, 608
BssMI GATC 9 cut(s) 28, 34, 91, 97, 262, 367, 394, 456, 586
BssNI GRCGYC 1 cut(s) 646
BssT1I CCWWGG 1 cut(s) 608
Bst2UI CCWGG 2 cut(s) 584, 630
Bst4CI ACNGT 2 cut(s) 530, 640
BstACI GRCGYC 1 cut(s) 646
BstAPI GCANNNNNTGC 1 cut(s) 672
BstC8I GCNNGC 2 cut(s) 106, 694
BstDEI CTNAG 2 cut(s) 702, 722
BstDSI CCRYGG 1 cut(s) 608
BstF5I GGATG 1 cut(s) 93
BstKTI GATC 9 cut(s) 31, 37, 94, 100, 265, 370, 397, 459, 589
BstMAI GTCTC 1 cut(s) 653
BstMBI GATC 9 cut(s) 28, 34, 91, 97, 262, 367, 394, 456, 586
BstMWI GCNNNNNNNGC 2 cut(s) 191, 672
BstNI CCWGG 2 cut(s) 584, 630
BstNSI RCATGY 1 cut(s) 696
BstSCI CCNGG 2 cut(s) 582, 628
BstSLI GKGCMC 1 cut(s) 164
BstV1I GCAGC 2 cut(s) 39, 315
BstX2I RGATCY 6 cut(s) 28, 91, 97, 262, 367, 394
BstXI CCANNNNNNTGG 1 cut(s) 88
BstYI RGATCY 6 cut(s) 28, 91, 97, 262, 367, 394
BsuRI GGCC 2 cut(s) 104, 800
BtgI CCRYGG 1 cut(s) 608
BtrI CACGTC 1 cut(s) 713
BtsCI GGATG 1 cut(s) 93
BtsIMutI CAGTG 2 cut(s) 535, 754
BveI ACCTGC 1 cut(s) 697
Cac8I GCNNGC 2 cut(s) 106, 694
Cfr10I RCCGGY 1 cut(s) 104
Cfr13I GGNCC 2 cut(s) 249, 686
CseI GACGC 1 cut(s) 635
CsiI ACCWGGT 1 cut(s) 628
CviAII CATG 5 cut(s) 115, 122, 609, 693, 816
CviJI RGCY 8 cut(s) 52, 80, 104, 185, 328, 613, 777, 800
CviKI_1 RGCY 8 cut(s) 52, 80, 104, 185, 328, 613, 777, 800
DdeI CTNAG 2 cut(s) 702, 722
DpnI GATC 9 cut(s) 30, 36, 93, 99, 264, 369, 396, 458, 588
DpnII GATC 9 cut(s) 28, 34, 91, 97, 262, 367, 394, 456, 586
DraI TTTAAA 1 cut(s) 444
EaeI YGGCCR 1 cut(s) 102
Eco130I CCWWGG 1 cut(s) 608
Eco47I GGWCC 2 cut(s) 249, 686
Eco57I CTGAAG 1 cut(s) 96
Eco88I CYCGRG 1 cut(s) 41
EcoO109I RGGNCCY 1 cut(s) 686
EcoRII CCWGG 2 cut(s) 582, 628
EcoT14I CCWWGG 1 cut(s) 608
ErhI CCWWGG 1 cut(s) 608
Esp3I CGTCTC 1 cut(s) 653
FaeI CATG 5 cut(s) 118, 125, 612, 696, 819
FaqI GGGAC 3 cut(s) 552, 699, 776
FatI CATG 5 cut(s) 114, 121, 608, 692, 815
Fnu4HI GCNGC 4 cut(s) 53, 275, 329, 407
FokI GGATG 1 cut(s) 100
Fsp4HI GCNGC 4 cut(s) 53, 275, 329, 407
GluI GCNGC 4 cut(s) 53, 275, 329, 407
GsaI CCCAGC 1 cut(s) 777
GsuI CTGGAG 2 cut(s) 302, 495
HaeIII GGCC 2 cut(s) 104, 800
HapII CCGG 2 cut(s) 56, 105
HgaI GACGC 1 cut(s) 635
Hin1I GRCGYC 1 cut(s) 646
Hin1II CATG 5 cut(s) 118, 125, 612, 696, 819
HincII GTYRAC 2 cut(s) 283, 415
HindII GTYRAC 2 cut(s) 283, 415
HinfI GANTC 5 cut(s) 118, 221, 268, 380, 400
HpaII CCGG 2 cut(s) 56, 105
HphI GGTGA 1 cut(s) 581
Hpy166II GTNNAC 2 cut(s) 283, 415
Hpy188I TCNGA 7 cut(s) 253, 267, 385, 399, 456, 461, 703
Hpy188III TCNNGA 5 cut(s) 32, 43, 95, 319, 724
Hpy8I GTNNAC 2 cut(s) 283, 415
HpyAV CCTTC 4 cut(s) 239, 548, 554, 811
HpyCH4III ACNGT 2 cut(s) 530, 640
HpyCH4IV ACGT 1 cut(s) 712
HpyCH4V TGCA 2 cut(s) 666, 692
HpyF10VI GCNNNNNNNGC 2 cut(s) 191, 672
HpyF3I CTNAG 2 cut(s) 702, 722
HpySE526I ACGT 1 cut(s) 712
Hsp92I GRCGYC 1 cut(s) 646
Hsp92II CATG 5 cut(s) 118, 125, 612, 696, 819
KroI GCCGGC 1 cut(s) 104
KroNI GCCGGC 1 cut(s) 106
Kzo9I GATC 9 cut(s) 28, 34, 91, 97, 262, 367, 394, 456, 586
Lsp1109I GCAGC 2 cut(s) 39, 315
LweI GCATC 1 cut(s) 460
MabI ACCWGGT 1 cut(s) 628
MaeII ACGT 1 cut(s) 712
MaeIII GTNAC 2 cut(s) 173, 752
MalI GATC 9 cut(s) 30, 36, 93, 99, 264, 369, 396, 458, 588
MboI GATC 9 cut(s) 28, 34, 91, 97, 262, 367, 394, 456, 586
MboII GAAGA 7 cut(s) 58, 334, 389, 533, 545, 560, 563
MflI RGATCY 6 cut(s) 28, 91, 97, 262, 367, 394
MhlI GDGCHC 1 cut(s) 164
MluCI AATT 6 cut(s) 68, 140, 197, 305, 344, 437
MlyI GAGTC 1 cut(s) 112
MmeI TCCRAC 1 cut(s) 264
MnlI CCTC 7 cut(s) 188, 247, 379, 385, 697, 701, 720
MroNI GCCGGC 1 cut(s) 104
MroXI GAANNNNTTC 1 cut(s) 306
MseI TTAA 4 cut(s) 23, 143, 443, 618
MspI CCGG 2 cut(s) 56, 105
MspR9I CCNGG 2 cut(s) 584, 630
Mva1269I GAATGC 1 cut(s) 668
MvaI CCWGG 2 cut(s) 584, 630
MwoI GCNNNNNNNGC 2 cut(s) 191, 672
NaeI GCCGGC 1 cut(s) 106
NcoI CCATGG 1 cut(s) 608
NdeII GATC 9 cut(s) 28, 34, 91, 97, 262, 367, 394, 456, 586
NgoMIV GCCGGC 1 cut(s) 104
NlaIII CATG 5 cut(s) 118, 125, 612, 696, 819
NlaIV GGNNCC 3 cut(s) 12, 250, 687
NmuCI GTSAC 2 cut(s) 173, 752
NspI RCATGY 1 cut(s) 696
PaeI GCATGC 1 cut(s) 696
PaeR7I CTCGAG 1 cut(s) 41
PcsI WCGNNNNNNNCGW 1 cut(s) 249
PctI GAATGC 1 cut(s) 668
PdiI GCCGGC 1 cut(s) 106
PdmI GAANNNNTTC 1 cut(s) 306
PfeI GAWTC 4 cut(s) 221, 268, 380, 400
PkrI GCNGC 4 cut(s) 54, 276, 330, 408
PleI GAGTC 1 cut(s) 112
PpsI GAGTC 1 cut(s) 112
PpuMI RGGWCCY 1 cut(s) 686
Psp5II RGGWCCY 1 cut(s) 686
Psp6I CCWGG 2 cut(s) 582, 628
PspFI CCCAGC 1 cut(s) 773
PspGI CCWGG 2 cut(s) 582, 628
PspN4I GGNNCC 3 cut(s) 12, 250, 687
PspPI GGNCC 2 cut(s) 249, 686
PspPPI RGGWCCY 1 cut(s) 686
PsuI RGATCY 6 cut(s) 28, 91, 97, 262, 367, 394
SaqAI TTAA 4 cut(s) 23, 143, 443, 618
SatI GCNGC 4 cut(s) 53, 275, 329, 407
Sau3AI GATC 9 cut(s) 28, 34, 91, 97, 262, 367, 394, 456, 586
Sau96I GGNCC 2 cut(s) 249, 686
SchI GAGTC 1 cut(s) 112
ScrFI CCNGG 2 cut(s) 584, 630
SduI GDGCHC 1 cut(s) 164
SexAI ACCWGGT 1 cut(s) 628
SfaNI GCATC 1 cut(s) 460
Sfr274I CTCGAG 1 cut(s) 41
SinI GGWCC 2 cut(s) 249, 686
SlaI CTCGAG 1 cut(s) 41
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
SphI GCATGC 1 cut(s) 696
Sse9I AATT 6 cut(s) 68, 140, 197, 305, 344, 437
SsiI CCGC 3 cut(s) 275, 407, 675
StyD4I CCNGG 2 cut(s) 582, 628
StyI CCWWGG 1 cut(s) 608
TaaI ACNGT 2 cut(s) 530, 640
TaiI ACGT 1 cut(s) 715
TaqI TCGA 2 cut(s) 42, 579
TasI AATT 6 cut(s) 68, 140, 197, 305, 344, 437
TauI GCSGC 2 cut(s) 277, 409
TfiI GAWTC 4 cut(s) 221, 268, 380, 400
Tru1I TTAA 4 cut(s) 23, 143, 443, 618
Tru9I TTAA 4 cut(s) 23, 143, 443, 618
TscAI CASTG 2 cut(s) 535, 761
TseFI GTSAC 2 cut(s) 173, 752
TseI GCWGC 2 cut(s) 52, 328
Tsp45I GTSAC 2 cut(s) 173, 752
TspDTI ATGAA 1 cut(s) 315
TspGWI ACGGA 1 cut(s) 479
TspRI CASTG 2 cut(s) 535, 761
VpaK11BI GGWCC 2 cut(s) 249, 686
XapI RAATTY 2 cut(s) 68, 344
XceI RCATGY 1 cut(s) 696
XhoI CTCGAG 1 cut(s) 41
XmnI GAANNNNTTC 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.