Rh2DG485200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000653
Physical Location & Seq
Reverse (-)
70077646 .. 70079119
1474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG485200.1

Sequence Viewer

Length: 345 bp
ATGTATATCATAAAGCAGCTGGTTGATGTATATTGCAAGCTTCCATCTTCCCCAGCCTGTAAGTATCTTGTACGAGCACCCTGTAACCTCAAAACAGGTAGCAAGGGGAAAGAATCAAAGGATCATCTAAAATTTGCCCGTGATGACTTTTTGGGCATAAATATTCCAGGTTTGTTATTTGTTTTTTTTAAGTCTGTGGGAGGATATGCTAAGCTGAAGAGTTGTGCTTATTGTTTCTCTATTGGTCACTGGGAGTGGGAGGACTGTGAAGATTGTCCTAGACCCAAGGACGTCGTCTTTGAGAAAGATGAATACTTAGATGGGGATGGGATTTCCTCAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.91

Weight (kDa)

6.11

Isoelectric Point (pI)

35.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 294
AclWI GGATC 1 cut(s) 129
AcsI RAATTY 1 cut(s) 131
AcuI CTGAAG 1 cut(s) 236
AcyI GRCGYC 1 cut(s) 291
AfaI GTAC 1 cut(s) 72
AjnI CCWGG 1 cut(s) 166
AluBI AGCT 3 cut(s) 19, 40, 214
AluI AGCT 3 cut(s) 19, 40, 214
Alw21I GWGCWC 1 cut(s) 79
AlwI GGATC 1 cut(s) 129
ApeKI GCWGC 1 cut(s) 16
ApoI RAATTY 1 cut(s) 131
ArsI GACNNNNNNTTYG 2 cut(s) 281, 313
Bbv12I GWGCWC 1 cut(s) 79
BbvI GCAGC 1 cut(s) 28
BccI CCATC 3 cut(s) 52, 314, 320
BciT130I CCWGG 1 cut(s) 168
BfaI CTAG 1 cut(s) 279
BisI GCNGC 1 cut(s) 17
BlpI GCTNAGC 1 cut(s) 210
BlsI GCNGC 1 cut(s) 18
Bme1390I CCNGG 1 cut(s) 168
BmrFI CCNGG 1 cut(s) 168
BmrI ACTGGG 1 cut(s) 259
BmuI ACTGGG 1 cut(s) 259
Bpu1102I GCTNAGC 1 cut(s) 210
BsaHI GRCGYC 1 cut(s) 291
BsaJI CCNNGG 1 cut(s) 285
Bse1I ACTGG 1 cut(s) 254
BseBI CCWGG 1 cut(s) 168
BseDI CCNNGG 1 cut(s) 285
BseGI GGATG 1 cut(s) 331
BseNI ACTGG 1 cut(s) 254
BseXI GCAGC 1 cut(s) 28
BseYI CCCAGC 1 cut(s) 52
BsiHKAI GWGCWC 1 cut(s) 79
Bsp1286I GDGCHC 1 cut(s) 79
Bsp143I GATC 1 cut(s) 121
Bsp1720I GCTNAGC 1 cut(s) 210
BspPI GGATC 1 cut(s) 129
BsrI ACTGG 1 cut(s) 254
BssECI CCNNGG 1 cut(s) 285
BssMI GATC 1 cut(s) 121
BssNI GRCGYC 1 cut(s) 291
BssT1I CCWWGG 1 cut(s) 285
Bst2UI CCWGG 1 cut(s) 168
Bst4CI ACNGT 1 cut(s) 266
Bst6I CTCTTC 1 cut(s) 212
BstACI GRCGYC 1 cut(s) 291
BstC8I GCNNGC 1 cut(s) 38
BstDEI CTNAG 3 cut(s) 210, 316, 337
BstF5I GGATG 1 cut(s) 331
BstKTI GATC 1 cut(s) 124
BstMBI GATC 1 cut(s) 121
BstNI CCWGG 1 cut(s) 168
BstSCI CCNGG 1 cut(s) 166
BstV1I GCAGC 1 cut(s) 28
BtsCI GGATG 1 cut(s) 331
BtsIMutI CAGTG 1 cut(s) 247
Cac8I GCNNGC 1 cut(s) 38
Csp6I GTAC 1 cut(s) 71
CviJI RGCY 4 cut(s) 19, 40, 56, 214
CviKI_1 RGCY 4 cut(s) 19, 40, 56, 214
CviQI GTAC 1 cut(s) 71
DdeI CTNAG 3 cut(s) 210, 316, 337
DpnI GATC 1 cut(s) 123
DpnII GATC 1 cut(s) 121
Eam1104I CTCTTC 1 cut(s) 212
EarI CTCTTC 1 cut(s) 212
Eco130I CCWWGG 1 cut(s) 285
Eco57I CTGAAG 1 cut(s) 236
EcoRII CCWGG 1 cut(s) 166
EcoT14I CCWWGG 1 cut(s) 285
ErhI CCWWGG 1 cut(s) 285
FaiI YATR 5 cut(s) 6, 11, 31, 158, 207
Fnu4HI GCNGC 1 cut(s) 17
FokI GGATG 1 cut(s) 338
Fsp4HI GCNGC 1 cut(s) 17
FspBI CTAG 1 cut(s) 279
GluI GCNGC 1 cut(s) 17
GsaI CCCAGC 1 cut(s) 56
Hin1I GRCGYC 1 cut(s) 291
HindIII AAGCTT 1 cut(s) 38
HinfI GANTC 1 cut(s) 113
Hpy188I TCNGA 1 cut(s) 340
Hpy99I CGWCG 1 cut(s) 296
HpyCH4III ACNGT 1 cut(s) 266
HpyCH4IV ACGT 1 cut(s) 291
HpyCH4V TGCA 1 cut(s) 36
HpyF3I CTNAG 3 cut(s) 210, 316, 337
HpySE526I ACGT 1 cut(s) 291
Hsp92I GRCGYC 1 cut(s) 291
Kzo9I GATC 1 cut(s) 121
LpnPI CCDG 8 cut(s) 5, 66, 70, 81, 94, 153, 180, 235
Lsp1109I GCAGC 1 cut(s) 28
MaeI CTAG 1 cut(s) 279
MaeII ACGT 1 cut(s) 291
MaeIII GTNAC 2 cut(s) 83, 245
MalI GATC 1 cut(s) 123
MboI GATC 1 cut(s) 121
MboII GAAGA 3 cut(s) 39, 229, 281
MhlI GDGCHC 1 cut(s) 79
MluCI AATT 1 cut(s) 131
MnlI CCTC 3 cut(s) 98, 194, 253
MseI TTAA 1 cut(s) 189
MspA1I CMGCKG 1 cut(s) 19
MspR9I CCNGG 1 cut(s) 168
MvaI CCWGG 1 cut(s) 168
NdeII GATC 1 cut(s) 121
NmuCI GTSAC 1 cut(s) 245
PfeI GAWTC 1 cut(s) 113
PflFI GACNNNGTC 1 cut(s) 293
PkrI GCNGC 1 cut(s) 18
Psp6I CCWGG 1 cut(s) 166
PspFI CCCAGC 1 cut(s) 52
PspGI CCWGG 1 cut(s) 166
PsyI GACNNNGTC 1 cut(s) 293
PvuII CAGCTG 1 cut(s) 19
RsaI GTAC 1 cut(s) 72
RsaNI GTAC 1 cut(s) 71
SaqAI TTAA 1 cut(s) 189
SatI GCNGC 1 cut(s) 17
Sau3AI GATC 1 cut(s) 121
ScrFI CCNGG 1 cut(s) 168
SduI GDGCHC 1 cut(s) 79
SetI ASST 7 cut(s) 21, 42, 90, 100, 172, 216, 294
Sse9I AATT 1 cut(s) 131
SspI AATATT 1 cut(s) 163
SspMI CTAG 1 cut(s) 279
StyD4I CCNGG 1 cut(s) 166
StyI CCWWGG 1 cut(s) 285
TaaI ACNGT 1 cut(s) 266
TaiI ACGT 1 cut(s) 294
TasI AATT 1 cut(s) 131
TfiI GAWTC 1 cut(s) 113
Tru1I TTAA 1 cut(s) 189
Tru9I TTAA 1 cut(s) 189
TscAI CASTG 1 cut(s) 254
TseFI GTSAC 1 cut(s) 245
TseI GCWGC 1 cut(s) 16
Tsp45I GTSAC 1 cut(s) 245
TspDTI ATGAA 1 cut(s) 324
TspRI CASTG 1 cut(s) 254
Tth111I GACNNNGTC 1 cut(s) 293
XapI RAATTY 1 cut(s) 131
XspI CTAG 1 cut(s) 279
ZraI GACGTC 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.