Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000653

Physical Location & Seq

Genomic Coordinates Forward (+)

25560303 .. 25560823

Gene Structure 521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00186160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGTAAGTACATCCCTAGTACGAAAGCACAGAGCTGCCAAGTTCGCTAAGATGAGAAGGGAGCTGAAGAGACAAAGAAGAAAGCTCGAGATACTGAATCTGAACGACAAAGAATATGCAAGTAGGCGCTTGATTATACCAGAGGACGAAGCCGCCGAGTTCGCGGCGCAGGCGAGAAGGAGATGGAAGAAGGAAAATAGAAAGCTCCACATACCGAATCTGAACAACAAAGCCGAAGTCGCGGAGCTTCGGAAAAGGCTTCAAAGAAAGACAAGCTCTGACGTTATAATAAAAGAAGACGGAGAAGTAAAAGATTATGAATATGGCTGTGGCGTTTGTGCTAACATGGATGAGAATCACTATGATTCGGACTGCCCATGGCTAGATAAACTGCCACCAGACCAAACTATTGTTGGCCCTTACTATGACATAGTTTGCATCGGCTGCATGTGGCCAGATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

154

Amino Acids

18.21

Weight (kDa)

9.08

Isoelectric Point (pI)

63.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000653)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02040 FvH4_6g20312 FvH4_7g29590 FvH4_7g29800 FvH4_7g30370 FvH4_7g30400 FvH4_7g30400 FvH4_7g30400 FvH4_7g30610
rosa_chinensis	RchiOBHm_Chr1g0362141 RchiOBHm_Chr1g0378631 RchiOBHm_Chr1g0378661 RchiOBHm_Chr1g0378841 RchiOBHm_Chr2g0149561
rosa_laevigata	RLG00000002620 RLG00000002622 RLG00000002629 RLG00000003999 RLG00000013563 RLG00000020408 RLG00000020410 RLG00000020421 RLG00000026416 RLG00000026417 RLG00000027654
rosa_multiflora	Rmu_sc0006867.1_g000011 Rmu_sc0006867.1_g000015 Rmu_sc0008712.1_g000008 Rmu_sc0014005.1_g000010
rosa_roxburghii	Rroxscaffold_3G00243880 Rroxscaffold_4G00280330 Rroxscaffold_4G00280340 Rroxscaffold_4G00280410 Rroxscaffold_7G00186160
rosa_rugosa	Rorug01G0302500 Rorug01G0302600 Rorug01G0410200 Rorug01G0410300 Rorug02G0404800.1 Rorug02G0404900 Rorug02G0412300 Rorug07G0158200.1
rosa_samantha	Rh1AG304700 Rh1AG431600 Rh1AG431700 Rh1AG432200 Rh1AG432300 Rh1BG263900 Rh1BG389900 Rh1BG390100 Rh1BG390900 Rh1BG424800 Rh1CG402300 Rh1CG403200 Rh1CG403300 Rh1CG403600 Rh1DG293900 Rh1DG420100 Rh1DG421100 Rh1DG421200 Rh1DG422000 Rh1DG457600 Rh2AG463400 Rh2BG476500 Rh2BG484800 Rh2CG450200 Rh2DG485200 Rh2DG494000 Rh6CG183000 Rh6DG174400 Rh7AG294000 Rh7CG314000 Rh7DG296800 Rh7DG306300
rosa_wichuraiana	Rw1G037740 Rw1G037820 Rw2G038540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	287
AccII	CGCG	2 cut(s)	164, 242
AciI	CCGC	3 cut(s)	153, 164, 242
AcoI	YGGCCR	1 cut(s)	452
AcuI	CTGAAG	1 cut(s)	86
AfaI	GTAC	2 cut(s)	10, 21
AgsI	TTSAA	1 cut(s)	263
AluBI	AGCT	6 cut(s)	35, 64, 85, 205, 247, 276
AluI	AGCT	6 cut(s)	35, 64, 85, 205, 247, 276
Alw26I	GTCTC	1 cut(s)	64
Ama87I	CYCGRG	1 cut(s)	86
AoxI	GGCC	2 cut(s)	415, 452
ApeKI	GCWGC	2 cut(s)	35, 444
ArsI	GACNNNNNNTTYG	2 cut(s)	222, 254
AspLEI	GCGC	2 cut(s)	129, 169
AspS9I	GGNCC	1 cut(s)	416
AvaI	CYCGRG	1 cut(s)	86
BalI	TGGCCA	1 cut(s)	454
BbsI	GAAGAC	1 cut(s)	303
BbvI	GCAGC	2 cut(s)	22, 431
BccI	CCATC	1 cut(s)	177
BcoDI	GTCTC	1 cut(s)	64
BfaI	CTAG	2 cut(s)	17, 383
BfoI	RGCGCY	1 cut(s)	130
BisI	GCNGC	4 cut(s)	36, 153, 165, 445
BlsI	GCNGC	4 cut(s)	37, 154, 166, 446
BmeT110I	CYCGRG	1 cut(s)	86
BmgT120I	GGNCC	1 cut(s)	416
BmsI	GCATC	1 cut(s)	447
BpiI	GAAGAC	1 cut(s)	303
BsaBI	GATNNNNATC	1 cut(s)	354
BsaJI	CCNNGG	1 cut(s)	377
Bse8I	GATNNNNATC	1 cut(s)	354
BseDI	CCNNGG	1 cut(s)	377
BseGI	GGATG	2 cut(s)	11, 355
BseJI	GATNNNNATC	1 cut(s)	354
BseXI	GCAGC	2 cut(s)	22, 431
Bsh1236I	CGCG	2 cut(s)	164, 242
BshFI	GGCC	2 cut(s)	417, 454
BsiHKCI	CYCGRG	1 cut(s)	86
BsmAI	GTCTC	1 cut(s)	64
BsnI	GGCC	2 cut(s)	417, 454
BsoBI	CYCGRG	1 cut(s)	86
Bsp19I	CCATGG	1 cut(s)	377
BspACI	CCGC	3 cut(s)	153, 164, 242
BspANI	GGCC	2 cut(s)	417, 454
BspFNI	CGCG	2 cut(s)	164, 242
BssECI	CCNNGG	1 cut(s)	377
BssT1I	CCWWGG	1 cut(s)	377
Bst6I	CTCTTC	1 cut(s)	62
BstAPI	GCANNNNNTGC	1 cut(s)	444
BstC8I	GCNNGC	1 cut(s)	171
BstDEI	CTNAG	1 cut(s)	48
BstDSI	CCRYGG	1 cut(s)	377
BstF5I	GGATG	2 cut(s)	11, 355
BstFNI	CGCG	2 cut(s)	164, 242
BstH2I	RGCGCY	1 cut(s)	130
BstHHI	GCGC	2 cut(s)	129, 169
BstMAI	GTCTC	1 cut(s)	64
BstMWI	GCNNNNNNNGC	5 cut(s)	44, 161, 170, 239, 444
BstNSI	RCATGY	1 cut(s)	451
BstUI	CGCG	2 cut(s)	164, 242
BstV1I	GCAGC	2 cut(s)	22, 431
BstV2I	GAAGAC	1 cut(s)	303
BsuRI	GGCC	2 cut(s)	417, 454
BtgI	CCRYGG	1 cut(s)	377
BtsCI	GGATG	2 cut(s)	11, 355
Cac8I	GCNNGC	1 cut(s)	171
CfoI	GCGC	2 cut(s)	129, 169
Cfr13I	GGNCC	1 cut(s)	416
Csp6I	GTAC	2 cut(s)	9, 20
CviAII	CATG	3 cut(s)	346, 378, 448
CviQI	GTAC	2 cut(s)	9, 20
DdeI	CTNAG	1 cut(s)	48
EaeI	YGGCCR	1 cut(s)	452
Eam1104I	CTCTTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	62
Eco130I	CCWWGG	1 cut(s)	377
Eco57I	CTGAAG	1 cut(s)	86
Eco88I	CYCGRG	1 cut(s)	86
EcoT14I	CCWWGG	1 cut(s)	377
ErhI	CCWWGG	1 cut(s)	377
FaeI	CATG	3 cut(s)	349, 381, 451
FatI	CATG	3 cut(s)	345, 377, 447
Fnu4HI	GCNGC	4 cut(s)	36, 153, 165, 445
FokI	GGATG	1 cut(s)	362
Fsp4HI	GCNGC	4 cut(s)	36, 153, 165, 445
FspBI	CTAG	2 cut(s)	17, 383
GlaI	GCGC	2 cut(s)	128, 168
GluI	GCNGC	4 cut(s)	36, 153, 165, 445
HaeII	RGCGCY	1 cut(s)	130
HaeIII	GGCC	2 cut(s)	417, 454
HhaI	GCGC	2 cut(s)	129, 169
Hin1II	CATG	3 cut(s)	349, 381, 451
Hin6I	GCGC	2 cut(s)	127, 167
HinP1I	GCGC	2 cut(s)	127, 167
HinfI	GANTC	4 cut(s)	97, 217, 355, 365
Hpy188I	TCNGA	5 cut(s)	102, 222, 252, 280, 370
Hpy188III	TCNNGA	1 cut(s)	88
HpyAV	CCTTC	3 cut(s)	51, 171, 184
HpyCH4IV	ACGT	1 cut(s)	282
HpyCH4V	TGCA	3 cut(s)	119, 438, 447
HpyF10VI	GCNNNNNNNGC	5 cut(s)	44, 161, 170, 239, 444
HpyF3I	CTNAG	1 cut(s)	48
HpySE526I	ACGT	1 cut(s)	282
Hsp92II	CATG	3 cut(s)	349, 381, 451
HspAI	GCGC	2 cut(s)	127, 167
LmnI	GCTCC	3 cut(s)	61, 210, 244
LpnPI	CCDG	3 cut(s)	153, 155, 411
Lsp1109I	GCAGC	2 cut(s)	22, 431
LweI	GCATC	1 cut(s)	447
MaeI	CTAG	2 cut(s)	17, 383
MaeII	ACGT	1 cut(s)	282
MboII	GAAGA	4 cut(s)	79, 90, 199, 308
MlsI	TGGCCA	1 cut(s)	454
MluNI	TGGCCA	1 cut(s)	454
MnlI	CCTC	1 cut(s)	136
Mox20I	TGGCCA	1 cut(s)	454
MscI	TGGCCA	1 cut(s)	454
Msp20I	TGGCCA	1 cut(s)	454
MvnI	CGCG	2 cut(s)	164, 242
MwoI	GCNNNNNNNGC	5 cut(s)	44, 161, 170, 239, 444
NcoI	CCATGG	1 cut(s)	377
NlaIII	CATG	3 cut(s)	349, 381, 451
NmeAIII	GCCGAG	1 cut(s)	181
NspI	RCATGY	1 cut(s)	451
PaeR7I	CTCGAG	1 cut(s)	86
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PfeI	GAWTC	4 cut(s)	97, 217, 355, 365
PkrI	GCNGC	4 cut(s)	37, 154, 166, 446
PsiI	TTATAA	1 cut(s)	287
PspPI	GGNCC	1 cut(s)	416
RsaI	GTAC	2 cut(s)	10, 21
RsaNI	GTAC	2 cut(s)	9, 20
SatI	GCNGC	4 cut(s)	36, 153, 165, 445
Sau96I	GGNCC	1 cut(s)	416
SetI	ASST	7 cut(s)	37, 66, 87, 207, 249, 278, 285
SfaNI	GCATC	1 cut(s)	447
Sfr274I	CTCGAG	1 cut(s)	86
SlaI	CTCGAG	1 cut(s)	86
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
SsiI	CCGC	3 cut(s)	153, 164, 242
SspMI	CTAG	2 cut(s)	17, 383
StyI	CCWWGG	1 cut(s)	377
TaiI	ACGT	1 cut(s)	285
TaqI	TCGA	1 cut(s)	87
TatI	WGTACW	1 cut(s)	8
TauI	GCSGC	2 cut(s)	155, 167
TfiI	GAWTC	4 cut(s)	97, 217, 355, 365
TseI	GCWGC	2 cut(s)	35, 444
TspDTI	ATGAA	1 cut(s)	333
TspGWI	ACGGA	1 cut(s)	315
XceI	RCATGY	1 cut(s)	451
XcmI	CCANNNNNNNNNTGG	1 cut(s)	410
XhoI	CTCGAG	1 cut(s)	86
XspI	CTAG	2 cut(s)	17, 383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.