RLG00000026417

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000653
Physical Location & Seq
Forward (+)
2911602 .. 2912467
866 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026417

Sequence Viewer

Length: 762 bp
ATGGAATGGGAACCTATGGGATTAAGAGATCCATATCAACTCGAGAAGAAGCTGCCAGAAAATATCAAATTCCCTGAGGCCAAGTGGATGGATCTGGATCTGGCTGGCGAGAACAAGACTCATGGTAGTAAGGGGGAACAATTAAGGGATTTGCTGTATTATATGCAAAAGCTTAGGCGCCAGATGAAGCTGCTCAAAAATAGCAATTTCCCTGAAGCCAACAAGAACAGGACACATTGTAGTAAGGGGGAAGAATCAAACAATGCTGAAGACTATTACAGTTTGGGCACATTTCTGCGTGACCTCACAGCTATCGTAGCAGAATTGGGTTATGATTTTGATTTGGATTCCATTGATTATGTTTCCGACGAAGAACCCGAGGACAAGGATCTGAATCTGCCGCCTGTAGACAAGTGTTGTGATGATGAACAATTTCCTGAACTCCAGAAAAAGCTACCGGAAAATATCAAATTCCCTGAAATCAAAACAAATGATGCTGGGGTGTCTTATGTCCGTGTGGGCGACTGTGTGTATGTGAAAGAGTCTAAAACGGAAGAAAACAGTGAAGATGGATATAGTGAAGAAGAAGAAGGAGAAGGTTGTCCCATTTGTTTTGACCTGGATCACAATAACAATAACTGCCCATGGCTAGTTAATGTTCCACCAGGTAAAACAGTTGGGCGTCTCTATGACATAGAATGCAAGGGTTGTGGTAAGCTGGGACCTGCATGCTGTTCTGAGGAGGTGTGGTCATTGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

254

Amino Acids

28.99

Weight (kDa)

4.51

Isoelectric Point (pI)

59.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 733
AccB1I GGYRCC 1 cut(s) 177
AccI GTMKAC 1 cut(s) 408
AciI CCGC 1 cut(s) 401
AclWI GGATC 5 cut(s) 23, 99, 105, 396, 630
AcsI RAATTY 2 cut(s) 68, 470
AcuI CTGAAG 2 cut(s) 234, 288
AcyI GRCGYC 2 cut(s) 178, 682
AjnI CCWGG 2 cut(s) 618, 664
AluBI AGCT 6 cut(s) 52, 172, 190, 311, 454, 718
AluI AGCT 6 cut(s) 52, 172, 190, 311, 454, 718
Alw26I GTCTC 1 cut(s) 689
AlwI GGATC 5 cut(s) 23, 99, 105, 396, 630
Ama87I CYCGRG 2 cut(s) 41, 377
AoxI GGCC 1 cut(s) 78
ApeKI GCWGC 2 cut(s) 52, 190
ApoI RAATTY 2 cut(s) 68, 470
Asp700I GAANNNNTTC 1 cut(s) 432
AspLEI GCGC 1 cut(s) 180
AspS9I GGNCC 1 cut(s) 722
AvaI CYCGRG 2 cut(s) 41, 377
AvaII GGWCC 1 cut(s) 722
AxyI CCTNAGG 1 cut(s) 75
BaeGI GKGCMC 1 cut(s) 290
BanI GGYRCC 1 cut(s) 177
BbsI GAAGAC 1 cut(s) 276
BbvI GCAGC 2 cut(s) 39, 177
BccI CCATC 2 cut(s) 82, 563
BciT130I CCWGG 2 cut(s) 620, 666
BcoDI GTCTC 1 cut(s) 689
BfaI CTAG 1 cut(s) 650
BfmI CTRYAG 1 cut(s) 405
BfoI RGCGCY 1 cut(s) 181
BfuAI ACCTGC 1 cut(s) 733
BisI GCNGC 3 cut(s) 53, 191, 401
BlsI GCNGC 3 cut(s) 54, 192, 402
Bme1390I CCNGG 2 cut(s) 620, 666
Bme18I GGWCC 1 cut(s) 722
BmeT110I CYCGRG 2 cut(s) 41, 377
BmgT120I GGNCC 1 cut(s) 722
BmiI GGNNCC 3 cut(s) 12, 179, 723
BmrFI CCNGG 2 cut(s) 620, 666
BmsI GCATC 1 cut(s) 484
BpiI GAAGAC 1 cut(s) 276
BpmI CTGGAG 1 cut(s) 428
Bpu10I CCTNAGC 1 cut(s) 173
BsaBI GATNNNNATC 3 cut(s) 33, 96, 393
BsaHI GRCGYC 2 cut(s) 178, 682
BsaJI CCNNGG 2 cut(s) 378, 644
BsaWI WCCGGW 1 cut(s) 457
BsaXI ACNNNNNCTCC 1 cut(s) 734
Bse21I CCTNAGG 1 cut(s) 75
Bse8I GATNNNNATC 3 cut(s) 33, 96, 393
BseBI CCWGG 2 cut(s) 620, 666
BseDI CCNNGG 2 cut(s) 378, 644
BseGI GGATG 1 cut(s) 93
BseJI GATNNNNATC 3 cut(s) 33, 96, 393
BseMII CTCAG 2 cut(s) 66, 729
BseRI GAGGAG 1 cut(s) 755
BseSI GKGCMC 1 cut(s) 290
BseXI GCAGC 2 cut(s) 39, 177
BseYI CCCAGC 2 cut(s) 497, 718
BshFI GGCC 1 cut(s) 80
BshNI GGYRCC 1 cut(s) 177
BsiHKCI CYCGRG 2 cut(s) 41, 377
BsiSI CCGG 1 cut(s) 458
BslFI GGGAC 2 cut(s) 588, 735
BsmAI GTCTC 1 cut(s) 689
BsmBI CGTCTC 1 cut(s) 689
BsmFI GGGAC 2 cut(s) 588, 735
BsmI GAATGC 1 cut(s) 704
BsnI GGCC 1 cut(s) 80
BsoBI CYCGRG 2 cut(s) 41, 377
Bsp1286I GDGCHC 1 cut(s) 290
Bsp143I GATC 5 cut(s) 28, 91, 97, 388, 622
Bsp19I CCATGG 1 cut(s) 644
BspACI CCGC 1 cut(s) 401
BspANI GGCC 1 cut(s) 80
BspCNI CTCAG 2 cut(s) 67, 730
BspLI GGNNCC 3 cut(s) 12, 179, 723
BspMI ACCTGC 1 cut(s) 733
BspPI GGATC 5 cut(s) 23, 99, 105, 396, 630
BspT107I GGYRCC 1 cut(s) 177
BssECI CCNNGG 2 cut(s) 378, 644
BssMI GATC 5 cut(s) 28, 91, 97, 388, 622
BssNI GRCGYC 2 cut(s) 178, 682
BssT1I CCWWGG 1 cut(s) 644
Bst2UI CCWGG 2 cut(s) 620, 666
Bst4CI ACNGT 4 cut(s) 281, 527, 563, 676
BstACI GRCGYC 2 cut(s) 178, 682
BstC8I GCNNGC 2 cut(s) 106, 730
BstDEI CTNAG 3 cut(s) 75, 173, 738
BstDSI CCRYGG 1 cut(s) 644
BstF5I GGATG 1 cut(s) 93
BstH2I RGCGCY 1 cut(s) 181
BstHHI GCGC 1 cut(s) 180
BstKTI GATC 5 cut(s) 31, 94, 100, 391, 625
BstMAI GTCTC 1 cut(s) 689
BstMBI GATC 5 cut(s) 28, 91, 97, 388, 622
BstMWI GCNNNNNNNGC 1 cut(s) 317
BstNI CCWGG 2 cut(s) 620, 666
BstNSI RCATGY 1 cut(s) 732
BstSCI CCNGG 2 cut(s) 618, 664
BstSFI CTRYAG 1 cut(s) 405
BstSLI GKGCMC 1 cut(s) 290
BstV1I GCAGC 2 cut(s) 39, 177
BstV2I GAAGAC 1 cut(s) 276
BstX2I RGATCY 4 cut(s) 28, 91, 97, 388
BstXI CCANNNNNNTGG 1 cut(s) 88
BstYI RGATCY 4 cut(s) 28, 91, 97, 388
Bsu36I CCTNAGG 1 cut(s) 75
BsuRI GGCC 1 cut(s) 80
BtgI CCRYGG 1 cut(s) 644
BtsCI GGATG 1 cut(s) 93
BtsIMutI CAGTG 1 cut(s) 568
BveI ACCTGC 1 cut(s) 733
Cac8I GCNNGC 2 cut(s) 106, 730
CfoI GCGC 1 cut(s) 180
Cfr13I GGNCC 1 cut(s) 722
CseI GACGC 1 cut(s) 671
CsiI ACCWGGT 1 cut(s) 664
CspCI CAANNNNNGTGG 2 cut(s) 691, 726
CviAII CATG 3 cut(s) 122, 645, 729
DdeI CTNAG 3 cut(s) 75, 173, 738
DinI GGCGCC 1 cut(s) 179
DpnI GATC 5 cut(s) 30, 93, 99, 390, 624
DpnII GATC 5 cut(s) 28, 91, 97, 388, 622
Eco130I CCWWGG 1 cut(s) 644
Eco47I GGWCC 1 cut(s) 722
Eco57I CTGAAG 2 cut(s) 234, 288
Eco81I CCTNAGG 1 cut(s) 75
Eco88I CYCGRG 2 cut(s) 41, 377
EcoO109I RGGNCCY 1 cut(s) 722
EcoRII CCWGG 2 cut(s) 618, 664
EcoT14I CCWWGG 1 cut(s) 644
EgeI GGCGCC 1 cut(s) 179
EheI GGCGCC 1 cut(s) 179
ErhI CCWWGG 1 cut(s) 644
Esp3I CGTCTC 1 cut(s) 689
FaeI CATG 3 cut(s) 125, 648, 732
FaqI GGGAC 2 cut(s) 588, 735
FatI CATG 3 cut(s) 121, 644, 728
FblI GTMKAC 1 cut(s) 408
Fnu4HI GCNGC 3 cut(s) 53, 191, 401
FokI GGATG 1 cut(s) 100
Fsp4HI GCNGC 3 cut(s) 53, 191, 401
FspBI CTAG 1 cut(s) 650
GlaI GCGC 1 cut(s) 179
GluI GCNGC 3 cut(s) 53, 191, 401
GsaI CCCAGC 2 cut(s) 501, 722
GsuI CTGGAG 1 cut(s) 428
HaeII RGCGCY 1 cut(s) 181
HaeIII GGCC 1 cut(s) 80
HapII CCGG 1 cut(s) 458
HgaI GACGC 1 cut(s) 671
HhaI GCGC 1 cut(s) 180
Hin1I GRCGYC 2 cut(s) 178, 682
Hin1II CATG 3 cut(s) 125, 648, 732
Hin6I GCGC 1 cut(s) 178
HinP1I GCGC 1 cut(s) 178
HindIII AAGCTT 1 cut(s) 170
HinfI GANTC 5 cut(s) 118, 254, 347, 394, 542
HpaII CCGG 1 cut(s) 458
Hpy166II GTNNAC 1 cut(s) 409
Hpy188I TCNGA 3 cut(s) 367, 393, 739
Hpy188III TCNNGA 4 cut(s) 43, 95, 437, 445
Hpy8I GTNNAC 1 cut(s) 409
Hpy99I CGWCG 1 cut(s) 371
HpyAV CCTTC 2 cut(s) 584, 590
HpyCH4III ACNGT 4 cut(s) 281, 527, 563, 676
HpyCH4V TGCA 3 cut(s) 166, 702, 728
HpyF10VI GCNNNNNNNGC 1 cut(s) 317
HpyF3I CTNAG 3 cut(s) 75, 173, 738
Hsp92I GRCGYC 2 cut(s) 178, 682
Hsp92II CATG 3 cut(s) 125, 648, 732
HspAI GCGC 1 cut(s) 178
KasI GGCGCC 1 cut(s) 177
Kzo9I GATC 5 cut(s) 28, 91, 97, 388, 622
Lsp1109I GCAGC 2 cut(s) 39, 177
LweI GCATC 1 cut(s) 484
MabI ACCWGGT 1 cut(s) 664
MaeI CTAG 1 cut(s) 650
MaeIII GTNAC 1 cut(s) 299
MalI GATC 5 cut(s) 30, 93, 99, 390, 624
MboI GATC 5 cut(s) 28, 91, 97, 388, 622
MboII GAAGA 9 cut(s) 58, 263, 281, 383, 566, 578, 593, 596, 599
MflI RGATCY 4 cut(s) 28, 91, 97, 388
MhlI GDGCHC 1 cut(s) 290
MluCI AATT 6 cut(s) 68, 140, 205, 323, 431, 470
Mly113I GGCGCC 1 cut(s) 178
MlyI GAGTC 2 cut(s) 112, 551
MmeI TCCRAC 1 cut(s) 390
MnlI CCTC 5 cut(s) 70, 314, 373, 733, 736
MroXI GAANNNNTTC 1 cut(s) 432
MseI TTAA 3 cut(s) 23, 143, 654
MspI CCGG 1 cut(s) 458
MspR9I CCNGG 2 cut(s) 620, 666
Mva1269I GAATGC 1 cut(s) 704
MvaI CCWGG 2 cut(s) 620, 666
MwoI GCNNNNNNNGC 1 cut(s) 317
NarI GGCGCC 1 cut(s) 178
NcoI CCATGG 1 cut(s) 644
NdeII GATC 5 cut(s) 28, 91, 97, 388, 622
NlaIII CATG 3 cut(s) 125, 648, 732
NlaIV GGNNCC 3 cut(s) 12, 179, 723
NmuCI GTSAC 1 cut(s) 299
NspI RCATGY 1 cut(s) 732
PaeI GCATGC 1 cut(s) 732
PaeR7I CTCGAG 1 cut(s) 41
PcsI WCGNNNNNNNCGW 1 cut(s) 375
PctI GAATGC 1 cut(s) 704
PdmI GAANNNNTTC 1 cut(s) 432
PfeI GAWTC 3 cut(s) 254, 347, 394
PkrI GCNGC 3 cut(s) 54, 192, 402
PleI GAGTC 2 cut(s) 112, 550
PluTI GGCGCC 1 cut(s) 181
PpsI GAGTC 2 cut(s) 112, 550
PpuMI RGGWCCY 1 cut(s) 722
Psp5II RGGWCCY 1 cut(s) 722
Psp6I CCWGG 2 cut(s) 618, 664
PspFI CCCAGC 2 cut(s) 497, 718
PspGI CCWGG 2 cut(s) 618, 664
PspN4I GGNNCC 3 cut(s) 12, 179, 723
PspPI GGNCC 1 cut(s) 722
PspPPI RGGWCCY 1 cut(s) 722
PsuI RGATCY 4 cut(s) 28, 91, 97, 388
SaqAI TTAA 3 cut(s) 23, 143, 654
SatI GCNGC 3 cut(s) 53, 191, 401
Sau3AI GATC 5 cut(s) 28, 91, 97, 388, 622
Sau96I GGNCC 1 cut(s) 722
SchI GAGTC 2 cut(s) 112, 551
ScrFI CCNGG 2 cut(s) 620, 666
SduI GDGCHC 1 cut(s) 290
SexAI ACCWGGT 1 cut(s) 664
SfaNI GCATC 1 cut(s) 484
SfcI CTRYAG 1 cut(s) 405
SfoI GGCGCC 1 cut(s) 179
Sfr274I CTCGAG 1 cut(s) 41
SinI GGWCC 1 cut(s) 722
SlaI CTCGAG 1 cut(s) 41
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
SphI GCATGC 1 cut(s) 732
Sse9I AATT 6 cut(s) 68, 140, 205, 323, 431, 470
SsiI CCGC 1 cut(s) 401
SspDI GGCGCC 1 cut(s) 177
SspMI CTAG 1 cut(s) 650
StyD4I CCNGG 2 cut(s) 618, 664
StyI CCWWGG 1 cut(s) 644
TaaI ACNGT 4 cut(s) 281, 527, 563, 676
TaqI TCGA 1 cut(s) 42
TasI AATT 6 cut(s) 68, 140, 205, 323, 431, 470
TauI GCSGC 1 cut(s) 403
TfiI GAWTC 3 cut(s) 254, 347, 394
Tru1I TTAA 3 cut(s) 23, 143, 654
Tru9I TTAA 3 cut(s) 23, 143, 654
TscAI CASTG 1 cut(s) 568
TseFI GTSAC 1 cut(s) 299
TseI GCWGC 2 cut(s) 52, 190
Tsp45I GTSAC 1 cut(s) 299
TspDTI ATGAA 2 cut(s) 200, 441
TspGWI ACGGA 2 cut(s) 503, 566
TspRI CASTG 1 cut(s) 568
VpaK11BI GGWCC 1 cut(s) 722
XapI RAATTY 2 cut(s) 68, 470
XceI RCATGY 1 cut(s) 732
XhoI CTCGAG 1 cut(s) 41
XmiI GTMKAC 1 cut(s) 408
XmnI GAANNNNTTC 1 cut(s) 432
XspI CTAG 1 cut(s) 650
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.