FvH4_7g29590

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000653
Physical Location & Seq
Forward (+)
21732056 .. 21733523
1468 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g29590.t1

Sequence Viewer

Length: 573 bp
ATGCTATTAATCCATCAGTTTTTGCTCATTTTGTTTTCTTTGCTTTTGAATTTTATAGCCGAAAAACGACATGATGATGGCTGTCTGGTCTGCGGTAGCGGCGATCACTTCGAAGAGGACTGCCCGTGCTTTGATAAAATCCCACCAGGCGTAGAACTTGACCGAGATTACGACCGAGTCTGCATTGGTTGTGGGAGAATCGGAGAGATCTGCTGTTCCAAGGGAGCGTATGCTACTCTGAGGAGGTGTGGTGCTTGTGGCTGGGGTGGTCACTGGTACTGGGACGACAAGTGCAGTAAGGACTTTGTCCACCACCCCGACAGAGTCAAGCTCTCCTTCTTCAAGGACCTCCTCTCCGCTGAACAATCCTCTCTGCAGAACAAGGAAGAGGACCAGGTTATGGTCGATCTTAGGAAGGACAACAAGAACGAGGATGACTATGGCACGGAAGAATATGGGCCAGAAGTTGCAGGTGGAAATGAGTCTTCAGATCAGAGCAGGTTCAAGGGTTGTAAGGCAATCTCGGAGTTGGAGCAGGGAGCGATGCAAGTGGGAGAGACGCTGCCCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

191

Amino Acids

21.41

Weight (kDa)

4.83

Isoelectric Point (pI)

41.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 461
Acc36I ACCTGC 2 cut(s) 461, 489
AccB7I CCANNNNNTGG 1 cut(s) 400
AciI CCGC 3 cut(s) 93, 99, 357
AcsI RAATTY 1 cut(s) 49
AcuI CTGAAG 1 cut(s) 471
AfaI GTAC 1 cut(s) 278
AfiI CCNNNNNNNGG 1 cut(s) 400
AgsI TTSAA 3 cut(s) 49, 343, 505
AjnI CCWGG 2 cut(s) 145, 393
AluBI AGCT 1 cut(s) 331
AluI AGCT 1 cut(s) 331
Alw26I GTCTC 1 cut(s) 551
AoxI GGCC 1 cut(s) 458
ApeKI GCWGC 1 cut(s) 562
ApoI RAATTY 1 cut(s) 49
AseI ATTAAT 1 cut(s) 8
AspS9I GGNCC 3 cut(s) 346, 391, 458
AsuII TTCGAA 1 cut(s) 111
AvaII GGWCC 2 cut(s) 346, 391
BbsI GAAGAC 1 cut(s) 477
BbvI GCAGC 1 cut(s) 549
BccI CCATC 2 cut(s) 21, 71
BciT130I CCWGG 2 cut(s) 147, 395
BcoDI GTCTC 1 cut(s) 551
BfmI CTRYAG 1 cut(s) 374
BfuAI ACCTGC 2 cut(s) 461, 489
BglII AGATCT 1 cut(s) 207
BisI GCNGC 2 cut(s) 100, 563
BlsI GCNGC 2 cut(s) 101, 564
Bme1390I CCNGG 2 cut(s) 147, 395
Bme18I GGWCC 2 cut(s) 346, 391
BmgT120I GGNCC 3 cut(s) 346, 391, 458
BmrFI CCNGG 2 cut(s) 147, 395
BmrI ACTGGG 1 cut(s) 289
BmsI GCATC 1 cut(s) 534
BmuI ACTGGG 1 cut(s) 289
BpiI GAAGAC 1 cut(s) 477
BplI GAGNNNNNCTC 2 cut(s) 315, 347
Bpu14I TTCGAA 1 cut(s) 111
BsaJI CCNNGG 1 cut(s) 219
BsaXI ACNNNNNCTCC 4 cut(s) 235, 265, 338, 368
Bsc4I CCNNNNNNNGG 1 cut(s) 400
Bse1I ACTGG 2 cut(s) 278, 284
BseBI CCWGG 2 cut(s) 147, 395
BseDI CCNNGG 1 cut(s) 219
BseGI GGATG 1 cut(s) 439
BseLI CCNNNNNNNGG 1 cut(s) 400
BseMII CTCAG 1 cut(s) 230
BseNI ACTGG 2 cut(s) 278, 284
BseRI GAGGAG 2 cut(s) 256, 341
BseXI GCAGC 1 cut(s) 549
BseYI CCCAGC 1 cut(s) 261
BsgI GTGCAG 1 cut(s) 313
Bsh1285I CGRYCG 1 cut(s) 175
BshFI GGCC 1 cut(s) 460
BsiEI CGRYCG 1 cut(s) 175
BslFI GGGAC 1 cut(s) 296
BslI CCNNNNNNNGG 1 cut(s) 400
BsmAI GTCTC 1 cut(s) 551
BsmBI CGTCTC 1 cut(s) 551
BsmFI GGGAC 1 cut(s) 296
BsnI GGCC 1 cut(s) 460
Bsp119I TTCGAA 1 cut(s) 111
Bsp143I GATC 4 cut(s) 103, 207, 406, 490
BspACI CCGC 3 cut(s) 93, 99, 357
BspANI GGCC 1 cut(s) 460
BspCNI CTCAG 1 cut(s) 231
BspMAI CTGCAG 1 cut(s) 378
BspMI ACCTGC 2 cut(s) 461, 489
BspT104I TTCGAA 1 cut(s) 111
BsrI ACTGG 2 cut(s) 278, 284
BssECI CCNNGG 1 cut(s) 219
BssMI GATC 4 cut(s) 103, 207, 406, 490
BssT1I CCWWGG 1 cut(s) 219
Bst2UI CCWGG 2 cut(s) 147, 395
Bst6I CTCTTC 2 cut(s) 108, 381
BstBI TTCGAA 1 cut(s) 111
BstDEI CTNAG 2 cut(s) 239, 410
BstF5I GGATG 1 cut(s) 439
BstKTI GATC 4 cut(s) 106, 210, 409, 493
BstMAI GTCTC 1 cut(s) 551
BstMBI GATC 4 cut(s) 103, 207, 406, 490
BstMCI CGRYCG 1 cut(s) 175
BstMWI GCNNNNNNNGC 1 cut(s) 99
BstNI CCWGG 2 cut(s) 147, 395
BstSCI CCNGG 2 cut(s) 145, 393
BstSFI CTRYAG 1 cut(s) 374
BstV1I GCAGC 1 cut(s) 549
BstV2I GAAGAC 1 cut(s) 477
BstX2I RGATCY 1 cut(s) 207
BstYI RGATCY 1 cut(s) 207
BsuRI GGCC 1 cut(s) 460
BtgZI GCGATG 1 cut(s) 557
BtsCI GGATG 1 cut(s) 439
BtsIMutI CAGTG 1 cut(s) 271
BveI ACCTGC 2 cut(s) 461, 489
Cfr13I GGNCC 3 cut(s) 346, 391, 458
CseI GACGC 1 cut(s) 568
CsiI ACCWGGT 1 cut(s) 393
Csp6I GTAC 1 cut(s) 277
CviAII CATG 1 cut(s) 71
CviJI RGCY 5 cut(s) 59, 81, 261, 331, 460
CviKI_1 RGCY 5 cut(s) 59, 81, 261, 331, 460
CviQI GTAC 1 cut(s) 277
DdeI CTNAG 2 cut(s) 239, 410
DpnI GATC 4 cut(s) 105, 209, 408, 492
DpnII GATC 4 cut(s) 103, 207, 406, 490
Eam1104I CTCTTC 2 cut(s) 108, 381
EarI CTCTTC 2 cut(s) 108, 381
Eco130I CCWWGG 1 cut(s) 219
Eco47I GGWCC 2 cut(s) 346, 391
Eco57I CTGAAG 1 cut(s) 471
EcoO109I RGGNCCY 1 cut(s) 346
EcoRII CCWGG 2 cut(s) 145, 393
EcoT14I CCWWGG 1 cut(s) 219
ErhI CCWWGG 1 cut(s) 219
Esp3I CGTCTC 1 cut(s) 551
FaeI CATG 1 cut(s) 74
FaiI YATR 6 cut(s) 56, 72, 231, 401, 441, 456
FalI AAGNNNNNCTT 2 cut(s) 320, 352
FaqI GGGAC 1 cut(s) 296
FatI CATG 1 cut(s) 70
Fnu4HI GCNGC 2 cut(s) 100, 563
FokI GGATG 1 cut(s) 446
Fsp4HI GCNGC 2 cut(s) 100, 563
GluI GCNGC 2 cut(s) 100, 563
GsaI CCCAGC 1 cut(s) 265
HaeIII GGCC 1 cut(s) 460
HgaI GACGC 1 cut(s) 568
Hin1II CATG 1 cut(s) 74
HinfI GANTC 4 cut(s) 177, 198, 324, 482
Hpy166II GTNNAC 1 cut(s) 310
Hpy188I TCNGA 5 cut(s) 203, 240, 490, 495, 526
Hpy8I GTNNAC 1 cut(s) 310
HpyAV CCTTC 2 cut(s) 346, 409
HpyCH4V TGCA 5 cut(s) 183, 294, 376, 470, 547
HpyF10VI GCNNNNNNNGC 1 cut(s) 99
HpyF3I CTNAG 2 cut(s) 239, 410
Hsp92II CATG 1 cut(s) 74
Kzo9I GATC 4 cut(s) 103, 207, 406, 490
LmnI GCTCC 3 cut(s) 224, 532, 539
Lsp1109I GCAGC 1 cut(s) 549
LweI GCATC 1 cut(s) 534
MabI ACCWGGT 1 cut(s) 393
MaeIII GTNAC 1 cut(s) 269
MalI GATC 4 cut(s) 105, 209, 408, 492
MboI GATC 4 cut(s) 103, 207, 406, 490
MboII GAAGA 5 cut(s) 125, 331, 398, 461, 477
MflI RGATCY 1 cut(s) 207
MluCI AATT 1 cut(s) 49
MlyI GAGTC 3 cut(s) 186, 333, 491
MmeI TCCRAC 1 cut(s) 510
MnlI CCTC 8 cut(s) 109, 234, 237, 359, 362, 379, 382, 424
MseI TTAA 1 cut(s) 8
MslI CAYNNNNRTG 1 cut(s) 75
MspA1I CMGCKG 1 cut(s) 359
MspR9I CCNGG 2 cut(s) 147, 395
MvaI CCWGG 2 cut(s) 147, 395
MwoI GCNNNNNNNGC 1 cut(s) 99
NdeII GATC 4 cut(s) 103, 207, 406, 490
NlaIII CATG 1 cut(s) 74
NmuCI GTSAC 1 cut(s) 269
NspV TTCGAA 1 cut(s) 111
PaqCI CACCTGC 1 cut(s) 461
PfeI GAWTC 1 cut(s) 198
PflFI GACNNNGTC 3 cut(s) 176, 305, 323
PflMI CCANNNNNTGG 1 cut(s) 400
PkrI GCNGC 2 cut(s) 101, 564
PleI GAGTC 3 cut(s) 185, 332, 490
PpsI GAGTC 3 cut(s) 185, 332, 490
PpuMI RGGWCCY 1 cut(s) 346
PshBI ATTAAT 1 cut(s) 8
Psp5II RGGWCCY 1 cut(s) 346
Psp6I CCWGG 2 cut(s) 145, 393
PspFI CCCAGC 1 cut(s) 261
PspGI CCWGG 2 cut(s) 145, 393
PspPI GGNCC 3 cut(s) 346, 391, 458
PspPPI RGGWCCY 1 cut(s) 346
PstI CTGCAG 1 cut(s) 378
PsuI RGATCY 1 cut(s) 207
PsyI GACNNNGTC 3 cut(s) 176, 305, 323
RsaI GTAC 1 cut(s) 278
RsaNI GTAC 1 cut(s) 277
RseI CAYNNNNRTG 1 cut(s) 75
SaqAI TTAA 1 cut(s) 8
SatI GCNGC 2 cut(s) 100, 563
Sau3AI GATC 4 cut(s) 103, 207, 406, 490
Sau96I GGNCC 3 cut(s) 346, 391, 458
SchI GAGTC 3 cut(s) 186, 333, 491
ScrFI CCNGG 2 cut(s) 147, 395
SetI ASST 6 cut(s) 248, 333, 351, 399, 475, 503
SexAI ACCWGGT 1 cut(s) 393
SfaNI GCATC 1 cut(s) 534
SfcI CTRYAG 1 cut(s) 374
SfuI TTCGAA 1 cut(s) 111
SinI GGWCC 2 cut(s) 346, 391
SmiMI CAYNNNNRTG 1 cut(s) 75
Sse9I AATT 1 cut(s) 49
SsiI CCGC 3 cut(s) 93, 99, 357
StyD4I CCNGG 2 cut(s) 145, 393
StyI CCWWGG 1 cut(s) 219
TaqI TCGA 2 cut(s) 111, 405
TaqII GACCGA 2 cut(s) 177, 189
TasI AATT 1 cut(s) 49
TauI GCSGC 1 cut(s) 102
TfiI GAWTC 1 cut(s) 198
Tru1I TTAA 1 cut(s) 8
Tru9I TTAA 1 cut(s) 8
TscAI CASTG 1 cut(s) 278
TseFI GTSAC 1 cut(s) 269
TseI GCWGC 1 cut(s) 562
Tsp45I GTSAC 1 cut(s) 269
TspGWI ACGGA 1 cut(s) 461
TspRI CASTG 1 cut(s) 278
Tth111I GACNNNGTC 3 cut(s) 176, 305, 323
Van91I CCANNNNNTGG 1 cut(s) 400
VpaK11BI GGWCC 2 cut(s) 346, 391
VspI ATTAAT 1 cut(s) 8
XapI RAATTY 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.