Rorug01G0410300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000653
Physical Location & Seq
Reverse (-)
51576752 .. 51578879
2128 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0410300.1

Sequence Viewer

Length: 1938 bp
ATGAAGCTCAAGTCCTCCATTGGTGAACTTATCTTCCTTTTCCCTATACTCCCTTTCTTGTTTTCCTCAGTCATTGCTGACCTTAACTCTGATAAAGAAGCCCTCCTTGAATTTGCTGCCAATGTCTTTCATACACAAAAACTCAACTGGAATAGTTCTACACCAGTTTGCTCCTCTTGGGTTGGAATCACTTGCAATATAAACCAAACCAGTGTGATTGATATCCATCTTCCTGCCATTGGACTCTTTGGCTCAATCCCAAACAACACCATTGGAAAGCTTGATGCTCTTAGAGTCCTTAGTCTCCACTCCAATTTCCTCTATGGAACTCTTCCTTCTGATGTTCTGTCCATTCCTTCATTGAAATTTCTTTACCTCCAAAACAACAACTTCTCTGGTGCCATTCCTGCTTCTCTCTCCCCCAATCTCATTGTATTAGAGTTATCCTTCAACTCCTTATCTGGGATCATTCCAACCATCATTTATAACCTGACAAGGCTTGCAGAGTTGAGTCTTCAAAACAATTCCATCTCTGGTGCCATCCCCAATCTGAACCTGACAGAGCTTAAGCTTTTGAATTTGAGCTATAACAACTTGAATGGCTCAATTCCATATTCCCTCCAAAAGTACCCTCGTTCCTCATTTCTTGGGAATTCTCTCTTATGTGGGAAACCTCTAAACCATTGTTCTAAAATCTCATCCTCTTCACCTTCTCCTTCCCCTATTTACTTGCCTGCAGCCTCACCAGTAGTCCTGGAAAATCGAAATGCTACCCCTGCCAAAAAGTTACTTGGCCTAGGTTCAATCATTGCTTTGGGAGCTTCTGTTTTGTTTGTTTTGGTCATCATGGTCATCTTATGCTGTTTGAAAAGGACTAGCAAGGGAGGCAGTAGCATGTTGAAAGGGAAGAGTGGTGCCTCTAGTGATGAAAAGACTGATCAGAAGTCTATAAGTTTCGGGAGTGGAGTGCAAGCAGCAGCAAAGAACAAGCTGTTCTTCTTCGAAGGATGCAATTACAATTTCGATCTTGAGGATCTACTGAGGGCATCAGCTGAAGTTCTTGGAAAAGGAAGTTATGGGACAACCTACAAGGCTGTTTTGGATGAGGAAACAACTGTTGTAGTGAAAAGGTTAAAGGAAATTGTTGTGGGTAAGAGGGAGTTTGAGCAGCATATGGAGGTTGTGGAGAGGGTTGGGAAGCACCCAAATGTTGTGCCTCCTCGCGCTTATTATTATTCTAGAGATGAGAAGCTTTTGGTCTACAACTACATGCCAGCAGGAAGCTTGTTTGCTCACTTGCATGGAAGCAGGGATGCTGGAAGATCCCCGCTTGATTGGGATTCAAGACTAAAGATCTCTCTTGGAATTGCGAGGGCAATTGCTCACATTCATTCTGAGGGTGGTCTTAAATGCGTCCATGGTAACATAAAGTCCACAAATGTCCTCCTAACCGAAGACCTTGAGGCTTGCATCTCAGATGTTGGGTTGACTCCTCTAATGAACTTCCCTGTGGTTGCATCCATGTCACGAAGAGCTACTGGTTATCTTGCACCAGAGGCAATTGACATGCGCAAAATGTCCCACAAATCAGATGTTTACAGCTTTGGTGTGCTCCTACTCGAAATGCTGACAGGGAAAACCACACTTCAACATGCAGGGCATTATGATAATGTAGTGGTTGATCTCCCAAGGTGGGTGAAATCTGTTGTTCGTGAGGAATGGACTGCTGAGGTTTTTGATTTGGAGTTGCTTAGACAACAAGGCATTGAAGAAGAGATGGTGCAGATGCTGCAGATTGCATTGGCATGTGTAGCAAAGCTACCTGAGTCACGCCCCAAGATGGATGAAGTTGTGAGAATGCTAGAGGAATTTCGGCAATCTGACACTAGGACTAGGCCTTCCTCTGAGTCTGAGCTTGATGTGCAAAGTACCCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

645

Amino Acids

70.78

Weight (kDa)

7.59

Isoelectric Point (pI)

44.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 28 - 66 4.5e-09 Leucine rich repeat N-terminal domain
PK_Tyr_Ser-Thr PF07714 352 - 621 5.6e-37 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 352 - 619 4.1e-32 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 486
Acc16I TGCGCA 1 cut(s) 1571
AccB1I GGYRCC 3 cut(s) 398, 536, 914
AccI GTMKAC 1 cut(s) 1260
AccII CGCG 1 cut(s) 1224
AciI CCGC 1 cut(s) 1328
AclWI GGATC 3 cut(s) 473, 1041, 1317
AcsI RAATTY 5 cut(s) 110, 365, 577, 652, 1868
AcuI CTGAAG 1 cut(s) 1074
AfaI GTAC 2 cut(s) 629, 1930
AfiI CCNNNNNNNGG 4 cut(s) 239, 462, 1693, 1840
AflII CTTAAG 1 cut(s) 566
AjnI CCWGG 1 cut(s) 753
AloI GAACNNNNNNTCC 2 cut(s) 18, 50
Alw21I GWGCWC 1 cut(s) 1614
Alw26I GTCTC 1 cut(s) 308
AlwI GGATC 3 cut(s) 473, 1041, 1317
AlwNI CAGNNNCTG 1 cut(s) 1789
AoxI GGCC 2 cut(s) 793, 1895
ApeKI GCWGC 6 cut(s) 116, 737, 974, 977, 1168, 1789
ApoI RAATTY 5 cut(s) 110, 365, 577, 652, 1868
AspA2I CCTAGG 1 cut(s) 796
AspLEI GCGC 2 cut(s) 1226, 1572
AsuHPI GGTGA 4 cut(s) 35, 699, 735, 1708
AsuII TTCGAA 1 cut(s) 1002
AvrII CCTAGG 1 cut(s) 796
BanI GGYRCC 3 cut(s) 398, 536, 914
BbsI GAAGAC 2 cut(s) 506, 1461
Bbv12I GWGCWC 1 cut(s) 1614
BbvCI CCTCAGC 1 cut(s) 1728
BbvI GCAGC 6 cut(s) 103, 749, 986, 989, 1180, 1776
BccI CCATC 6 cut(s) 234, 485, 536, 548, 1771, 1834
BciT130I CCWGG 1 cut(s) 755
BclI TGATCA 1 cut(s) 937
BcoDI GTCTC 1 cut(s) 308
BfaI CTAG 7 cut(s) 797, 876, 921, 1239, 1862, 1887, 1893
BfmI CTRYAG 2 cut(s) 735, 1790
BfrI CTTAAG 1 cut(s) 566
BglII AGATCT 1 cut(s) 1353
BisI GCNGC 6 cut(s) 117, 738, 975, 978, 1169, 1790
BlnI CCTAGG 1 cut(s) 796
BlsI GCNGC 6 cut(s) 118, 739, 976, 979, 1170, 1791
Bme1390I CCNGG 1 cut(s) 755
BmiI GGNNCC 3 cut(s) 400, 538, 916
BmrFI CCNGG 1 cut(s) 755
BmsI GCATC 7 cut(s) 274, 998, 1055, 1303, 1479, 1526, 1776
BpiI GAAGAC 2 cut(s) 506, 1461
Bpu10I CCTNAGC 1 cut(s) 1728
Bpu14I TTCGAA 1 cut(s) 1002
BpuEI CTTGAG 2 cut(s) 1049, 1481
BsaBI GATNNNNATC 2 cut(s) 221, 225
BsaJI CCNNGG 3 cut(s) 796, 1417, 1688
BsaXI ACNNNNNCTCC 2 cut(s) 810, 840
Bsc4I CCNNNNNNNGG 4 cut(s) 239, 462, 1693, 1840
Bse1I ACTGG 5 cut(s) 152, 164, 210, 746, 1543
Bse3DI GCAATG 2 cut(s) 72, 807
Bse8I GATNNNNATC 2 cut(s) 221, 225
BseBI CCWGG 1 cut(s) 755
BseDI CCNNGG 3 cut(s) 796, 1417, 1688
BseGI GGATG 7 cut(s) 540, 698, 1013, 1108, 1318, 1517, 1849
BseJI GATNNNNATC 2 cut(s) 221, 225
BseLI CCNNNNNNNGG 4 cut(s) 239, 462, 1693, 1840
BseMI GCAATG 2 cut(s) 72, 807
BseMII CTCAG 8 cut(s) 81, 1031, 1386, 1488, 1719, 1815, 1896, 1902
BseNI ACTGG 5 cut(s) 152, 164, 210, 746, 1543
BseRI GAGGAG 3 cut(s) 163, 1209, 1482
BseXI GCAGC 6 cut(s) 103, 749, 986, 989, 1180, 1776
BsgI GTGCAG 1 cut(s) 1802
Bsh1236I CGCG 1 cut(s) 1224
BshFI GGCC 2 cut(s) 795, 1897
BshNI GGYRCC 3 cut(s) 398, 536, 914
BsiHKAI GWGCWC 1 cut(s) 1614
BslFI GGGAC 2 cut(s) 1093, 1564
BslI CCNNNNNNNGG 4 cut(s) 239, 462, 1693, 1840
BsmAI GTCTC 1 cut(s) 308
BsmFI GGGAC 2 cut(s) 1093, 1564
BsmI GAATGC 1 cut(s) 1863
BsnI GGCC 2 cut(s) 795, 1897
Bsp119I TTCGAA 1 cut(s) 1002
Bsp1286I GDGCHC 1 cut(s) 1614
Bsp143I GATC 7 cut(s) 465, 937, 1024, 1033, 1322, 1353, 1681
Bsp19I CCATGG 1 cut(s) 1417
BspACI CCGC 1 cut(s) 1328
BspANI GGCC 2 cut(s) 795, 1897
BspCNI CTCAG 8 cut(s) 80, 1032, 1387, 1487, 1720, 1816, 1897, 1903
BspFNI CGCG 1 cut(s) 1224
BspLI GGNNCC 3 cut(s) 400, 538, 916
BspMAI CTGCAG 2 cut(s) 739, 1794
BspPI GGATC 3 cut(s) 473, 1041, 1317
BspQI GCTCTTC 1 cut(s) 1525
BspT104I TTCGAA 1 cut(s) 1002
BspT107I GGYRCC 3 cut(s) 398, 536, 914
BspTI CTTAAG 1 cut(s) 566
BsrDI GCAATG 2 cut(s) 72, 807
BsrI ACTGG 5 cut(s) 152, 164, 210, 746, 1543
BssECI CCNNGG 3 cut(s) 796, 1417, 1688
BssMI GATC 7 cut(s) 465, 937, 1024, 1033, 1322, 1353, 1681
BssT1I CCWWGG 3 cut(s) 796, 1417, 1688
Bst2UI CCWGG 1 cut(s) 755
Bst4CI ACNGT 1 cut(s) 1117
Bst6I CTCTTC 5 cut(s) 336, 709, 902, 1525, 1767
BstAFI CTTAAG 1 cut(s) 566
BstAPI GCANNNNNTGC 1 cut(s) 1789
BstBI TTCGAA 1 cut(s) 1002
BstC8I GCNNGC 5 cut(s) 501, 735, 972, 1275, 1468
BstDSI CCRYGG 1 cut(s) 1417
BstF5I GGATG 7 cut(s) 540, 698, 1013, 1108, 1318, 1517, 1849
BstFNI CGCG 1 cut(s) 1224
BstHHI GCGC 2 cut(s) 1226, 1572
BstKTI GATC 7 cut(s) 468, 940, 1027, 1036, 1325, 1356, 1684
BstMAI GTCTC 1 cut(s) 308
BstMBI GATC 7 cut(s) 465, 937, 1024, 1033, 1322, 1353, 1681
BstMWI GCNNNNNNNGC 8 cut(s) 407, 776, 818, 885, 1556, 1789, 1811, 1921
BstNI CCWGG 1 cut(s) 755
BstNSI RCATGY 5 cut(s) 898, 1273, 1570, 1655, 1809
BstSCI CCNGG 1 cut(s) 753
BstSFI CTRYAG 2 cut(s) 735, 1790
BstUI CGCG 1 cut(s) 1224
BstV1I GCAGC 6 cut(s) 103, 749, 986, 989, 1180, 1776
BstV2I GAAGAC 2 cut(s) 506, 1461
BstX2I RGATCY 3 cut(s) 1033, 1322, 1353
BstYI RGATCY 3 cut(s) 1033, 1322, 1353
BsuRI GGCC 2 cut(s) 795, 1897
BtgI CCRYGG 1 cut(s) 1417
BtsCI GGATG 7 cut(s) 540, 698, 1013, 1108, 1318, 1517, 1849
BtsIMutI CAGTG 1 cut(s) 217
Cac8I GCNNGC 5 cut(s) 501, 735, 972, 1275, 1468
CaiI CAGNNNCTG 1 cut(s) 1789
CfoI GCGC 2 cut(s) 1226, 1572
CseI GACGC 1 cut(s) 1402
Csp6I GTAC 2 cut(s) 628, 1929
CviQI GTAC 2 cut(s) 628, 1929
DpnI GATC 7 cut(s) 467, 939, 1026, 1035, 1324, 1355, 1683
DpnII GATC 7 cut(s) 465, 937, 1024, 1033, 1322, 1353, 1681
Eam1104I CTCTTC 5 cut(s) 336, 709, 902, 1525, 1767
EarI CTCTTC 5 cut(s) 336, 709, 902, 1525, 1767
Eco130I CCWWGG 3 cut(s) 796, 1417, 1688
Eco147I AGGCCT 1 cut(s) 1897
Eco32I GATATC 1 cut(s) 223
Eco57I CTGAAG 1 cut(s) 1074
EcoRI GAATTC 1 cut(s) 652
EcoRII CCWGG 1 cut(s) 753
EcoRV GATATC 1 cut(s) 223
EcoT14I CCWWGG 3 cut(s) 796, 1417, 1688
ErhI CCWWGG 3 cut(s) 796, 1417, 1688
FalI AAGNNNNNCTT 4 cut(s) 90, 122, 980, 1012
FaqI GGGAC 2 cut(s) 1093, 1564
FauI CCCGC 1 cut(s) 1335
FauNDI CATATG 1 cut(s) 1173
FbaI TGATCA 1 cut(s) 937
FblI GTMKAC 1 cut(s) 1260
Fnu4HI GCNGC 6 cut(s) 117, 738, 975, 978, 1169, 1790
FokI GGATG 7 cut(s) 527, 685, 1020, 1115, 1325, 1504, 1856
Fsp4HI GCNGC 6 cut(s) 117, 738, 975, 978, 1169, 1790
FspBI CTAG 7 cut(s) 797, 876, 921, 1239, 1862, 1887, 1893
FspI TGCGCA 1 cut(s) 1571
GlaI GCGC 2 cut(s) 1225, 1571
GluI GCNGC 6 cut(s) 117, 738, 975, 978, 1169, 1790
HaeIII GGCC 2 cut(s) 795, 1897
HgaI GACGC 1 cut(s) 1402
HhaI GCGC 2 cut(s) 1226, 1572
Hin6I GCGC 2 cut(s) 1224, 1570
HinP1I GCGC 2 cut(s) 1224, 1570
HincII GTYRAC 1 cut(s) 1488
HindII GTYRAC 1 cut(s) 1488
HindIII AAGCTT 4 cut(s) 278, 569, 1250, 1282
HinfI GANTC 8 cut(s) 186, 243, 294, 511, 1340, 1489, 1826, 1907
HphI GGTGA 4 cut(s) 35, 699, 735, 1708
Hpy166II GTNNAC 5 cut(s) 26, 1261, 1434, 1488, 1597
Hpy188III TCNNGA 6 cut(s) 958, 1028, 1239, 1344, 1527, 1712
Hpy8I GTNNAC 5 cut(s) 26, 1261, 1434, 1488, 1597
HpyAV CCTTC 7 cut(s) 345, 366, 457, 720, 726, 998, 1908
HpyCH4III ACNGT 1 cut(s) 1117
HpyF10VI GCNNNNNNNGC 8 cut(s) 407, 776, 818, 885, 1556, 1789, 1811, 1921
HspAI GCGC 2 cut(s) 1224, 1570
Ksp22I TGATCA 1 cut(s) 937
Kzo9I GATC 7 cut(s) 465, 937, 1024, 1033, 1322, 1353, 1681
LguI GCTCTTC 1 cut(s) 1525
LmnI GCTCC 3 cut(s) 176, 818, 1617
Lsp1109I GCAGC 6 cut(s) 103, 749, 986, 989, 1180, 1776
LweI GCATC 7 cut(s) 274, 998, 1055, 1303, 1479, 1526, 1776
MaeI CTAG 7 cut(s) 797, 876, 921, 1239, 1862, 1887, 1893
MaeIII GTNAC 4 cut(s) 786, 1421, 1524, 1827
MalI GATC 7 cut(s) 467, 939, 1026, 1035, 1324, 1355, 1683
MboI GATC 7 cut(s) 465, 937, 1024, 1033, 1322, 1353, 1681
MfeI CAATTG 2 cut(s) 1377, 1560
MflI RGATCY 3 cut(s) 1033, 1322, 1353
MhlI GDGCHC 1 cut(s) 1614
MlyI GAGTC 6 cut(s) 237, 303, 520, 1483, 1835, 1916
MmeI TCCRAC 2 cut(s) 163, 497
MseI TTAA 4 cut(s) 84, 567, 1133, 1407
MslI CAYNNNNRTG 3 cut(s) 1206, 1299, 1804
MspA1I CMGCKG 1 cut(s) 1052
MspCI CTTAAG 1 cut(s) 566
MspR9I CCNGG 1 cut(s) 755
MunI CAATTG 2 cut(s) 1377, 1560
Mva1269I GAATGC 1 cut(s) 1863
MvaI CCWGG 1 cut(s) 755
MvnI CGCG 1 cut(s) 1224
MwoI GCNNNNNNNGC 8 cut(s) 407, 776, 818, 885, 1556, 1789, 1811, 1921
NcoI CCATGG 1 cut(s) 1417
NdeI CATATG 1 cut(s) 1173
NdeII GATC 7 cut(s) 465, 937, 1024, 1033, 1322, 1353, 1681
NlaIV GGNNCC 3 cut(s) 400, 538, 916
NmuCI GTSAC 2 cut(s) 1524, 1827
NsbI TGCGCA 1 cut(s) 1571
NspI RCATGY 5 cut(s) 898, 1273, 1570, 1655, 1809
NspV TTCGAA 1 cut(s) 1002
PceI AGGCCT 1 cut(s) 1897
PciSI GCTCTTC 1 cut(s) 1525
PctI GAATGC 1 cut(s) 1863
PfeI GAWTC 2 cut(s) 186, 1340
PfoI TCCNGGA 1 cut(s) 753
PkrI GCNGC 6 cut(s) 118, 739, 976, 979, 1170, 1791
PleI GAGTC 6 cut(s) 237, 302, 519, 1483, 1834, 1915
PpsI GAGTC 6 cut(s) 237, 302, 519, 1483, 1834, 1915
PsiI TTATAA 1 cut(s) 486
Psp6I CCWGG 1 cut(s) 753
PspGI CCWGG 1 cut(s) 753
PspN4I GGNNCC 3 cut(s) 400, 538, 916
PstI CTGCAG 2 cut(s) 739, 1794
PstNI CAGNNNCTG 1 cut(s) 1789
PsuI RGATCY 3 cut(s) 1033, 1322, 1353
PvuII CAGCTG 1 cut(s) 1052
RsaI GTAC 2 cut(s) 629, 1930
RsaNI GTAC 2 cut(s) 628, 1929
RseI CAYNNNNRTG 3 cut(s) 1206, 1299, 1804
SapI GCTCTTC 1 cut(s) 1525
SaqAI TTAA 4 cut(s) 84, 567, 1133, 1407
SatI GCNGC 6 cut(s) 117, 738, 975, 978, 1169, 1790
Sau3AI GATC 7 cut(s) 465, 937, 1024, 1033, 1322, 1353, 1681
SchI GAGTC 6 cut(s) 237, 303, 520, 1483, 1835, 1916
ScrFI CCNGG 1 cut(s) 755
SduI GDGCHC 1 cut(s) 1614
SfaNI GCATC 7 cut(s) 274, 998, 1055, 1303, 1479, 1526, 1776
SfcI CTRYAG 2 cut(s) 735, 1790
SfuI TTCGAA 1 cut(s) 1002
SmiMI CAYNNNNRTG 3 cut(s) 1206, 1299, 1804
SmlI CTYRAG 4 cut(s) 8, 566, 1028, 1460
SmoI CTYRAG 4 cut(s) 8, 566, 1028, 1460
SseBI AGGCCT 1 cut(s) 1897
SsiI CCGC 1 cut(s) 1328
SspMI CTAG 7 cut(s) 797, 876, 921, 1239, 1862, 1887, 1893
StuI AGGCCT 1 cut(s) 1897
StyD4I CCNGG 1 cut(s) 753
StyI CCWWGG 3 cut(s) 796, 1417, 1688
TaaI ACNGT 1 cut(s) 1117
TaqI TCGA 4 cut(s) 763, 1002, 1023, 1620
TfiI GAWTC 2 cut(s) 186, 1340
Tru1I TTAA 4 cut(s) 84, 567, 1133, 1407
Tru9I TTAA 4 cut(s) 84, 567, 1133, 1407
TscAI CASTG 1 cut(s) 217
TseFI GTSAC 2 cut(s) 1524, 1827
TseI GCWGC 6 cut(s) 116, 737, 974, 977, 1168, 1789
Tsp45I GTSAC 2 cut(s) 1524, 1827
TspDTI ATGAA 7 cut(s) 17, 119, 348, 942, 1379, 1514, 1860
TspRI CASTG 1 cut(s) 217
Vha464I CTTAAG 1 cut(s) 566
XapI RAATTY 5 cut(s) 110, 365, 577, 652, 1868
XbaI TCTAGA 1 cut(s) 1238
XceI RCATGY 5 cut(s) 898, 1273, 1570, 1655, 1809
XmaJI CCTAGG 1 cut(s) 796
XmiI GTMKAC 1 cut(s) 1260
XspI CTAG 7 cut(s) 797, 876, 921, 1239, 1862, 1887, 1893
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.