Rh1CG403200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000653
Physical Location & Seq
Reverse (-)
66863052 .. 66864005
954 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG403200.1

Sequence Viewer

Length: 954 bp
ATGGAATGGGAACCTATGGGATTAAGAGATCCAGATCAACTCGAGAAGAAGCTGCCGGAAAATATCAAATTCCCTGAAACCAAGTGGATGGATCTGGATCTGGCCGGCGAGAACATGACTCATGGTAGTAAGGGGGAACAATTCAGGGATTTGCTGTATTATATGCAAAAGCTTAGGCGCCAGATGAAGCTGCTCAAAAATAGCAATTTCCCTGAAGCCAACAAGAACAGGACACATTGTAGCAAGGGGGAAGAATCAAACAATGCTGAAGACTATTATAGTTTGGGCACATTTCTGCGTGACCTCACAGCTATCATAGCAGAATTGGGTTATGATTTTGATTTGGATTCCTTTGATTATGTTTCCAACGAAGAATCCAAGGACGAGGATCTGAATCTGCCGCCTGTTGACAAGTGTTGTGATGATGAACAATTTCCTAAACTCCAGAAGAAGCTGCCGGAAAATATCAAATTCCCTGAAATAAAGTGGGTGGATCTGGGCGAAGAATCCGAGGACGAGGATCTGAATCTGCCGCCTGTTGACAAGTGTTGTGATGATGAACAATTTTTAAAACTTTGTCAGATCAGAACAAATGATGCTGGAGTGTCTTATGTCCGTATGGGCGCCTATGTGTATGTGAAGGACTCCAAAAAGGAAGAAAACAGTGAAGATGGATATAGTGAAGAAGAAGGAGAAGGTTGTCCCATTTGTTTCGACCTGGATCACAATAACAATAACTGCCCATGGCTAGTTAATGTTCCACCAGGTAAAACAGTTGGGCGTCTCTATGACATACAATGCAAGGGTTGTGATAAGCTGGGACTTGCATGCTGTTCTAAGGGAGTACGTGCTGTTCTCAGGAGGTGTGGTCTTTGTTTTGATTTTGGTCACTGGGGGGACGACTGCCCCAACTATAAGTATATGCCCCTTTCGGCCTTCCCAGATTATCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

317

Amino Acids

36.52

Weight (kDa)

4.59

Isoelectric Point (pI)

50.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 177, 623
AciI CCGC 2 cut(s) 401, 533
AclWI GGATC 7 cut(s) 23, 99, 105, 396, 501, 528, 729
AcoI YGGCCR 1 cut(s) 102
AcsI RAATTY 2 cut(s) 68, 470
AcuI CTGAAG 2 cut(s) 234, 288
AcyI GRCGYC 3 cut(s) 178, 624, 781
AfaI GTAC 1 cut(s) 846
AjnI CCWGG 2 cut(s) 717, 763
AluBI AGCT 6 cut(s) 52, 172, 190, 311, 454, 817
AluI AGCT 6 cut(s) 52, 172, 190, 311, 454, 817
Alw26I GTCTC 1 cut(s) 788
AlwI GGATC 7 cut(s) 23, 99, 105, 396, 501, 528, 729
Ama87I CYCGRG 1 cut(s) 41
AoxI GGCC 2 cut(s) 102, 933
ApeKI GCWGC 3 cut(s) 52, 190, 454
ApoI RAATTY 2 cut(s) 68, 470
Asp700I GAANNNNTTC 1 cut(s) 432
AspLEI GCGC 2 cut(s) 180, 626
AvaI CYCGRG 1 cut(s) 41
BaeGI GKGCMC 1 cut(s) 290
BanI GGYRCC 2 cut(s) 177, 623
BbsI GAAGAC 1 cut(s) 276
BbvI GCAGC 3 cut(s) 39, 177, 441
BccI CCATC 2 cut(s) 82, 665
BciT130I CCWGG 2 cut(s) 719, 765
BcoDI GTCTC 1 cut(s) 788
BfaI CTAG 1 cut(s) 749
BfoI RGCGCY 2 cut(s) 181, 627
BisI GCNGC 5 cut(s) 53, 191, 401, 455, 533
BlsI GCNGC 5 cut(s) 54, 192, 402, 456, 534
Bme1390I CCNGG 2 cut(s) 719, 765
BmeT110I CYCGRG 1 cut(s) 41
BmiI GGNNCC 3 cut(s) 12, 179, 625
BmrFI CCNGG 2 cut(s) 719, 765
BmrI ACTGGG 1 cut(s) 901
BmsI GCATC 1 cut(s) 586
BmuI ACTGGG 1 cut(s) 901
BpiI GAAGAC 1 cut(s) 276
BpmI CTGGAG 2 cut(s) 428, 621
Bpu10I CCTNAGC 1 cut(s) 173
BsaAI YACGTR 1 cut(s) 848
BsaBI GATNNNNATC 4 cut(s) 33, 96, 393, 525
BsaHI GRCGYC 3 cut(s) 178, 624, 781
BsaJI CCNNGG 3 cut(s) 378, 510, 743
BsaXI ACNNNNNCTCC 2 cut(s) 853, 883
Bse118I RCCGGY 1 cut(s) 104
Bse1I ACTGG 1 cut(s) 896
Bse8I GATNNNNATC 4 cut(s) 33, 96, 393, 525
BseBI CCWGG 2 cut(s) 719, 765
BseDI CCNNGG 3 cut(s) 378, 510, 743
BseGI GGATG 1 cut(s) 93
BseJI GATNNNNATC 4 cut(s) 33, 96, 393, 525
BseMII CTCAG 1 cut(s) 871
BseNI ACTGG 1 cut(s) 896
BseSI GKGCMC 1 cut(s) 290
BseXI GCAGC 3 cut(s) 39, 177, 441
BseYI CCCAGC 1 cut(s) 817
BshFI GGCC 2 cut(s) 104, 935
BshNI GGYRCC 2 cut(s) 177, 623
BsiHKCI CYCGRG 1 cut(s) 41
BsiSI CCGG 3 cut(s) 56, 105, 458
BslFI GGGAC 3 cut(s) 687, 834, 911
BsmAI GTCTC 1 cut(s) 788
BsmBI CGTCTC 1 cut(s) 788
BsmFI GGGAC 3 cut(s) 687, 834, 911
BsnI GGCC 2 cut(s) 104, 935
BsoBI CYCGRG 1 cut(s) 41
Bsp1286I GDGCHC 1 cut(s) 290
Bsp143I GATC 9 cut(s) 28, 34, 91, 97, 388, 493, 520, 582, 721
Bsp19I CCATGG 1 cut(s) 743
BspACI CCGC 2 cut(s) 401, 533
BspANI GGCC 2 cut(s) 104, 935
BspCNI CTCAG 1 cut(s) 870
BspLI GGNNCC 3 cut(s) 12, 179, 625
BspPI GGATC 7 cut(s) 23, 99, 105, 396, 501, 528, 729
BspT107I GGYRCC 2 cut(s) 177, 623
BsrFI RCCGGY 1 cut(s) 104
BsrI ACTGG 1 cut(s) 896
BssAI RCCGGY 1 cut(s) 104
BssECI CCNNGG 3 cut(s) 378, 510, 743
BssMI GATC 9 cut(s) 28, 34, 91, 97, 388, 493, 520, 582, 721
BssNI GRCGYC 3 cut(s) 178, 624, 781
BssT1I CCWWGG 2 cut(s) 378, 743
Bst2UI CCWGG 2 cut(s) 719, 765
Bst4CI ACNGT 2 cut(s) 665, 775
BstACI GRCGYC 3 cut(s) 178, 624, 781
BstBAI YACGTR 1 cut(s) 848
BstC8I GCNNGC 2 cut(s) 106, 829
BstDEI CTNAG 3 cut(s) 173, 837, 857
BstDSI CCRYGG 1 cut(s) 743
BstF5I GGATG 1 cut(s) 93
BstH2I RGCGCY 2 cut(s) 181, 627
BstHHI GCGC 2 cut(s) 180, 626
BstKTI GATC 9 cut(s) 31, 37, 94, 100, 391, 496, 523, 585, 724
BstMAI GTCTC 1 cut(s) 788
BstMBI GATC 9 cut(s) 28, 34, 91, 97, 388, 493, 520, 582, 721
BstMWI GCNNNNNNNGC 1 cut(s) 317
BstNI CCWGG 2 cut(s) 719, 765
BstNSI RCATGY 1 cut(s) 831
BstSCI CCNGG 2 cut(s) 717, 763
BstSLI GKGCMC 1 cut(s) 290
BstV1I GCAGC 3 cut(s) 39, 177, 441
BstV2I GAAGAC 1 cut(s) 276
BstX2I RGATCY 6 cut(s) 28, 91, 97, 388, 493, 520
BstXI CCANNNNNNTGG 1 cut(s) 88
BstYI RGATCY 6 cut(s) 28, 91, 97, 388, 493, 520
BsuRI GGCC 2 cut(s) 104, 935
BtgI CCRYGG 1 cut(s) 743
BtsCI GGATG 1 cut(s) 93
BtsIMutI CAGTG 2 cut(s) 670, 889
Cac8I GCNNGC 2 cut(s) 106, 829
CfoI GCGC 2 cut(s) 180, 626
Cfr10I RCCGGY 1 cut(s) 104
CseI GACGC 1 cut(s) 770
CsiI ACCWGGT 1 cut(s) 763
Csp6I GTAC 1 cut(s) 845
CviAII CATG 5 cut(s) 115, 122, 744, 828, 951
CviQI GTAC 1 cut(s) 845
DdeI CTNAG 3 cut(s) 173, 837, 857
DinI GGCGCC 2 cut(s) 179, 625
DpnI GATC 9 cut(s) 30, 36, 93, 99, 390, 495, 522, 584, 723
DpnII GATC 9 cut(s) 28, 34, 91, 97, 388, 493, 520, 582, 721
DraI TTTAAA 1 cut(s) 570
EaeI YGGCCR 1 cut(s) 102
Eco130I CCWWGG 2 cut(s) 378, 743
Eco57I CTGAAG 2 cut(s) 234, 288
Eco88I CYCGRG 1 cut(s) 41
EcoRII CCWGG 2 cut(s) 717, 763
EcoT14I CCWWGG 2 cut(s) 378, 743
EgeI GGCGCC 2 cut(s) 179, 625
EheI GGCGCC 2 cut(s) 179, 625
ErhI CCWWGG 2 cut(s) 378, 743
Esp3I CGTCTC 1 cut(s) 788
FaeI CATG 5 cut(s) 118, 125, 747, 831, 954
FaqI GGGAC 3 cut(s) 687, 834, 911
FatI CATG 5 cut(s) 114, 121, 743, 827, 950
Fnu4HI GCNGC 5 cut(s) 53, 191, 401, 455, 533
FokI GGATG 1 cut(s) 100
Fsp4HI GCNGC 5 cut(s) 53, 191, 401, 455, 533
FspBI CTAG 1 cut(s) 749
GlaI GCGC 2 cut(s) 179, 625
GluI GCNGC 5 cut(s) 53, 191, 401, 455, 533
GsaI CCCAGC 1 cut(s) 821
GsuI CTGGAG 2 cut(s) 428, 621
HaeII RGCGCY 2 cut(s) 181, 627
HaeIII GGCC 2 cut(s) 104, 935
HapII CCGG 3 cut(s) 56, 105, 458
HgaI GACGC 1 cut(s) 770
HhaI GCGC 2 cut(s) 180, 626
Hin1I GRCGYC 3 cut(s) 178, 624, 781
Hin1II CATG 5 cut(s) 118, 125, 747, 831, 954
Hin6I GCGC 2 cut(s) 178, 624
HinP1I GCGC 2 cut(s) 178, 624
HincII GTYRAC 2 cut(s) 409, 541
HindII GTYRAC 2 cut(s) 409, 541
HindIII AAGCTT 1 cut(s) 170
HinfI GANTC 8 cut(s) 118, 254, 347, 374, 394, 506, 526, 644
HpaII CCGG 3 cut(s) 56, 105, 458
Hpy166II GTNNAC 2 cut(s) 409, 541
Hpy188I TCNGA 5 cut(s) 393, 511, 525, 582, 587
Hpy188III TCNNGA 5 cut(s) 32, 43, 95, 445, 859
Hpy8I GTNNAC 2 cut(s) 409, 541
HpyAV CCTTC 4 cut(s) 634, 683, 689, 946
HpyCH4III ACNGT 2 cut(s) 665, 775
HpyCH4IV ACGT 1 cut(s) 847
HpyCH4V TGCA 3 cut(s) 166, 801, 827
HpyF10VI GCNNNNNNNGC 1 cut(s) 317
HpyF3I CTNAG 3 cut(s) 173, 837, 857
HpySE526I ACGT 1 cut(s) 847
Hsp92I GRCGYC 3 cut(s) 178, 624, 781
Hsp92II CATG 5 cut(s) 118, 125, 747, 831, 954
HspAI GCGC 2 cut(s) 178, 624
KasI GGCGCC 2 cut(s) 177, 623
KroI GCCGGC 1 cut(s) 104
KroNI GCCGGC 1 cut(s) 106
Kzo9I GATC 9 cut(s) 28, 34, 91, 97, 388, 493, 520, 582, 721
Lsp1109I GCAGC 3 cut(s) 39, 177, 441
LweI GCATC 1 cut(s) 586
MabI ACCWGGT 1 cut(s) 763
MaeI CTAG 1 cut(s) 749
MaeII ACGT 1 cut(s) 847
MaeIII GTNAC 2 cut(s) 299, 887
MalI GATC 9 cut(s) 30, 36, 93, 99, 390, 495, 522, 584, 723
MboI GATC 9 cut(s) 28, 34, 91, 97, 388, 493, 520, 582, 721
MflI RGATCY 6 cut(s) 28, 91, 97, 388, 493, 520
MhlI GDGCHC 1 cut(s) 290
MluCI AATT 7 cut(s) 68, 140, 205, 323, 431, 470, 563
Mly113I GGCGCC 2 cut(s) 178, 624
MlyI GAGTC 2 cut(s) 112, 638
MmeI TCCRAC 1 cut(s) 390
MnlI CCTC 5 cut(s) 314, 379, 505, 511, 855
MroNI GCCGGC 1 cut(s) 104
MroXI GAANNNNTTC 1 cut(s) 432
MseI TTAA 3 cut(s) 23, 569, 753
MspI CCGG 3 cut(s) 56, 105, 458
MspR9I CCNGG 2 cut(s) 719, 765
MvaI CCWGG 2 cut(s) 719, 765
MwoI GCNNNNNNNGC 1 cut(s) 317
NaeI GCCGGC 1 cut(s) 106
NarI GGCGCC 2 cut(s) 178, 624
NcoI CCATGG 1 cut(s) 743
NdeII GATC 9 cut(s) 28, 34, 91, 97, 388, 493, 520, 582, 721
NgoMIV GCCGGC 1 cut(s) 104
NlaIII CATG 5 cut(s) 118, 125, 747, 831, 954
NlaIV GGNNCC 3 cut(s) 12, 179, 625
NmuCI GTSAC 2 cut(s) 299, 887
NspI RCATGY 1 cut(s) 831
PaeI GCATGC 1 cut(s) 831
PaeR7I CTCGAG 1 cut(s) 41
PdiI GCCGGC 1 cut(s) 106
PdmI GAANNNNTTC 1 cut(s) 432
PfeI GAWTC 6 cut(s) 254, 347, 374, 394, 506, 526
PkrI GCNGC 5 cut(s) 54, 192, 402, 456, 534
PleI GAGTC 2 cut(s) 112, 638
PluTI GGCGCC 2 cut(s) 181, 627
PpsI GAGTC 2 cut(s) 112, 638
Ppu21I YACGTR 1 cut(s) 848
Psp6I CCWGG 2 cut(s) 717, 763
PspFI CCCAGC 1 cut(s) 817
PspGI CCWGG 2 cut(s) 717, 763
PspN4I GGNNCC 3 cut(s) 12, 179, 625
PsrI GAACNNNNNNTAC 2 cut(s) 837, 869
PsuI RGATCY 6 cut(s) 28, 91, 97, 388, 493, 520
RsaI GTAC 1 cut(s) 846
RsaNI GTAC 1 cut(s) 845
SaqAI TTAA 3 cut(s) 23, 569, 753
SatI GCNGC 5 cut(s) 53, 191, 401, 455, 533
Sau3AI GATC 9 cut(s) 28, 34, 91, 97, 388, 493, 520, 582, 721
SchI GAGTC 2 cut(s) 112, 638
ScrFI CCNGG 2 cut(s) 719, 765
SduI GDGCHC 1 cut(s) 290
SexAI ACCWGGT 1 cut(s) 763
SfaNI GCATC 1 cut(s) 586
SfoI GGCGCC 2 cut(s) 179, 625
Sfr274I CTCGAG 1 cut(s) 41
SlaI CTCGAG 1 cut(s) 41
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
SphI GCATGC 1 cut(s) 831
Sse9I AATT 7 cut(s) 68, 140, 205, 323, 431, 470, 563
SsiI CCGC 2 cut(s) 401, 533
SspDI GGCGCC 2 cut(s) 177, 623
SspMI CTAG 1 cut(s) 749
StyD4I CCNGG 2 cut(s) 717, 763
StyI CCWWGG 2 cut(s) 378, 743
TaaI ACNGT 2 cut(s) 665, 775
TaiI ACGT 1 cut(s) 850
TaqI TCGA 2 cut(s) 42, 714
TasI AATT 7 cut(s) 68, 140, 205, 323, 431, 470, 563
TauI GCSGC 2 cut(s) 403, 535
TfiI GAWTC 6 cut(s) 254, 347, 374, 394, 506, 526
Tru1I TTAA 3 cut(s) 23, 569, 753
Tru9I TTAA 3 cut(s) 23, 569, 753
TscAI CASTG 2 cut(s) 670, 896
TseFI GTSAC 2 cut(s) 299, 887
TseI GCWGC 3 cut(s) 52, 190, 454
Tsp45I GTSAC 2 cut(s) 299, 887
TspDTI ATGAA 3 cut(s) 200, 441, 573
TspGWI ACGGA 1 cut(s) 605
TspRI CASTG 2 cut(s) 670, 896
XapI RAATTY 2 cut(s) 68, 470
XceI RCATGY 1 cut(s) 831
XhoI CTCGAG 1 cut(s) 41
XmnI GAANNNNTTC 1 cut(s) 432
XspI CTAG 1 cut(s) 749
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.