Rroxscaffold_4G00280410

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000653
Physical Location & Seq
Reverse (-)
2966108 .. 2967971
1864 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00280410.1

Sequence Viewer

Length: 306 bp
ATGGAAGTACTTGTACCGACTACACAGACATTAACATTCGTAAAAGAAATCGATGAAGATGGCTGTCCCGTCTGCGGTGACAAAAATCACTTTCAAAATGAATGCTCATGCCTAGACAAAATCCCACCGGGCCTAGTTCTTGATCCTGTATATGACGAAGTTTGCATTGGTTGTGGCAAAATTGGAGAGATCTGCTGTTCCAAGGGAGCATATGCTGTTGTCAAGAGGTGTGGTCTTTGTATGGCTATAGGTCATTGGTACTGGGACGACAAGTGCTTGAAGAACTACCACCAGCCCCCTGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

11.15

Weight (kDa)

4.97

Isoelectric Point (pI)

42.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 75
AclWI GGATC 1 cut(s) 137
AfaI GTAC 3 cut(s) 9, 15, 260
AfiI CCNNNNNNNGG 1 cut(s) 74
AgsI TTSAA 2 cut(s) 95, 280
AjnI CCWGG 1 cut(s) 298
AjuI GAANNNNNNNTTGG 2 cut(s) 150, 182
AlwI GGATC 1 cut(s) 137
AoxI GGCC 1 cut(s) 130
AspS9I GGNCC 1 cut(s) 130
AsuC2I CCSGG 1 cut(s) 129
AsuHPI GGTGA 1 cut(s) 89
BarI GAAGNNNNNNTAC 1 cut(s) 29
BccI CCATC 1 cut(s) 53
BciT130I CCWGG 1 cut(s) 300
BcnI CCSGG 1 cut(s) 129
BfaI CTAG 2 cut(s) 113, 134
BfmI CTRYAG 1 cut(s) 246
BglII AGATCT 1 cut(s) 189
BmcAI AGTACT 1 cut(s) 9
Bme1390I CCNGG 2 cut(s) 129, 300
BmgT120I GGNCC 1 cut(s) 130
BmrFI CCNGG 2 cut(s) 129, 300
BmrI ACTGGG 1 cut(s) 271
BmuI ACTGGG 1 cut(s) 271
BpuMI CCSGG 1 cut(s) 129
Bsa29I ATCGAT 1 cut(s) 51
BsaJI CCNNGG 2 cut(s) 201, 298
Bsc4I CCNNNNNNNGG 1 cut(s) 74
Bse1I ACTGG 1 cut(s) 266
BseBI CCWGG 1 cut(s) 300
BseCI ATCGAT 1 cut(s) 51
BseDI CCNNGG 2 cut(s) 201, 298
BseLI CCNNNNNNNGG 1 cut(s) 74
BseNI ACTGG 1 cut(s) 266
BshFI GGCC 1 cut(s) 132
BshVI ATCGAT 1 cut(s) 51
BsiSI CCGG 1 cut(s) 128
BslFI GGGAC 2 cut(s) 51, 278
BslI CCNNNNNNNGG 1 cut(s) 74
BsmFI GGGAC 2 cut(s) 51, 278
BsmI GAATGC 1 cut(s) 107
BsnI GGCC 1 cut(s) 132
Bsp143I GATC 2 cut(s) 142, 189
BspACI CCGC 1 cut(s) 75
BspANI GGCC 1 cut(s) 132
BspDI ATCGAT 1 cut(s) 51
BspPI GGATC 1 cut(s) 137
BsrI ACTGG 1 cut(s) 266
BssECI CCNNGG 2 cut(s) 201, 298
BssMI GATC 2 cut(s) 142, 189
BssT1I CCWWGG 1 cut(s) 201
Bst2UI CCWGG 1 cut(s) 300
BstKTI GATC 2 cut(s) 145, 192
BstMBI GATC 2 cut(s) 142, 189
BstNI CCWGG 1 cut(s) 300
BstSCI CCNGG 2 cut(s) 127, 298
BstSFI CTRYAG 1 cut(s) 246
BstX2I RGATCY 1 cut(s) 189
BstXI CCANNNNNNTGG 1 cut(s) 299
BstYI RGATCY 1 cut(s) 189
Bsu15I ATCGAT 1 cut(s) 51
BsuRI GGCC 1 cut(s) 132
BsuTUI ATCGAT 1 cut(s) 51
Cfr13I GGNCC 1 cut(s) 130
ClaI ATCGAT 1 cut(s) 51
Csp6I GTAC 3 cut(s) 8, 14, 259
CspCI CAANNNNNGTGG 2 cut(s) 211, 246
CviAII CATG 1 cut(s) 108
CviJI RGCY 4 cut(s) 63, 132, 245, 295
CviKI_1 RGCY 4 cut(s) 63, 132, 245, 295
CviQI GTAC 3 cut(s) 8, 14, 259
DpnI GATC 2 cut(s) 144, 191
DpnII GATC 2 cut(s) 142, 189
Eco130I CCWWGG 1 cut(s) 201
EcoRII CCWGG 1 cut(s) 298
EcoT14I CCWWGG 1 cut(s) 201
ErhI CCWWGG 1 cut(s) 201
FaeI CATG 1 cut(s) 111
FaiI YATR 7 cut(s) 109, 151, 153, 211, 213, 242, 248
FaqI GGGAC 2 cut(s) 51, 278
FatI CATG 1 cut(s) 107
FauNDI CATATG 1 cut(s) 211
FspBI CTAG 2 cut(s) 113, 134
HaeIII GGCC 1 cut(s) 132
HapII CCGG 1 cut(s) 128
Hin1II CATG 1 cut(s) 111
HpaII CCGG 1 cut(s) 128
HphI GGTGA 1 cut(s) 89
Hpy188III TCNNGA 2 cut(s) 140, 223
HpyCH4V TGCA 1 cut(s) 165
Hsp92II CATG 1 cut(s) 111
Kzo9I GATC 2 cut(s) 142, 189
LmnI GCTCC 1 cut(s) 206
LpnPI CCDG 4 cut(s) 141, 159, 247, 285
MaeI CTAG 2 cut(s) 113, 134
MaeIII GTNAC 1 cut(s) 77
MalI GATC 2 cut(s) 144, 191
MboI GATC 2 cut(s) 142, 189
MboII GAAGA 2 cut(s) 68, 292
MflI RGATCY 1 cut(s) 189
MluCI AATT 1 cut(s) 180
MnlI CCTC 1 cut(s) 219
MseI TTAA 1 cut(s) 32
MspI CCGG 1 cut(s) 128
MspR9I CCNGG 2 cut(s) 129, 300
Mva1269I GAATGC 1 cut(s) 107
MvaI CCWGG 1 cut(s) 300
NciI CCSGG 1 cut(s) 129
NdeI CATATG 1 cut(s) 211
NdeII GATC 2 cut(s) 142, 189
NlaIII CATG 1 cut(s) 111
NmuCI GTSAC 1 cut(s) 77
PctI GAATGC 1 cut(s) 107
Psp6I CCWGG 1 cut(s) 298
PspGI CCWGG 1 cut(s) 298
PspPI GGNCC 1 cut(s) 130
PsuI RGATCY 1 cut(s) 189
RsaI GTAC 3 cut(s) 9, 15, 260
RsaNI GTAC 3 cut(s) 8, 14, 259
SaqAI TTAA 1 cut(s) 32
Sau3AI GATC 2 cut(s) 142, 189
Sau96I GGNCC 1 cut(s) 130
ScaI AGTACT 1 cut(s) 9
ScrFI CCNGG 2 cut(s) 129, 300
SetI ASST 2 cut(s) 230, 253
SfcI CTRYAG 1 cut(s) 246
Sse9I AATT 1 cut(s) 180
SsiI CCGC 1 cut(s) 75
SspMI CTAG 2 cut(s) 113, 134
StyD4I CCNGG 2 cut(s) 127, 298
StyI CCWWGG 1 cut(s) 201
TaqI TCGA 1 cut(s) 51
TasI AATT 1 cut(s) 180
TatI WGTACW 1 cut(s) 7
Tru1I TTAA 1 cut(s) 32
Tru9I TTAA 1 cut(s) 32
TseFI GTSAC 1 cut(s) 77
Tsp45I GTSAC 1 cut(s) 77
TspDTI ATGAA 2 cut(s) 69, 114
XcmI CCANNNNNNNNNTGG 1 cut(s) 296
XspI CTAG 2 cut(s) 113, 134
ZrmI AGTACT 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.