FvH4_7g30400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000653
Physical Location & Seq
Forward (+)
22150205 .. 22153090
2886 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g30400.t1

Sequence Viewer

Length: 1383 bp
ATGGAGCTCAAAGCCACGAAGGGAATTAGTTTGAAGCGTTCATCTATGGGAAGTAAGAAAAGAAAGAAAAATAGTTTCAAGCGTCAGAAAAGGCGCAAAGCAGCGGACATCAAATACAGCATGACAGAGATCACGAGGATGGCGAGGAATCGGCCTGTGCGTCCGAAGAAGCTCAAAACTCCAGATTTTGAAAATGGCAAAGAGGAGCTCCTGAGATTGATGAAGAGGATTCGACCTACTGTGGAAAAAGAGAAGGAGTACTTGTATAAAGAGGGCTGTGCTGTCTGCAGTAAAGATCACTTCCCTGAAGATTGCCCTTGCTTGGATAAAATCCCACCGGGCACAGATCTAGGGCCTCTGTTTGACAGGGTTTGCAATTGTTGTGGCAAAATCGGAGATGAATGCTGTCGCAAGGGAGCATATGCTATTCTCACAAGGTGTGATGGTTGTGAAAATATAGGTCATTGGTACTGGGAGAACAGGTGCCCCAAGGACTGGTGCAGACCCTCCTATCTAGTCGAGATCCCGTCCATCCAGGAACTTGAACATGAGGTTATGCAGAACAAGAACAAGGTTGTGGTCCAGGAGGATGACGAGTCTGACTCTGAGGATGAATATGACTACGACAACTTCTATGACGATAACGGGTGTCTGAAAAGGCTCAAAACTCCAGATTTTAAAGATGACAAAGAGGAGCTCCTGAGATTGATGAAGAGGATTCGACCTACTGTGGAAAAGGAGAAGGAGTACTTGTATAAAGAGGGCTGTGCTGTCTGCAGTAAAGATCACTTCCCTGAAGATTGCCCATGCTTGGATAAAATCCCACCGGGCACAGATCTAGGGCCTCTGTTTGACAGGGTTTGCAATTGTTGTGGCAAAATCGGAGATGAATGCTGTCGCAAGGGAGCATATGCTATTCTCACAAGGTGTGATGGTTGTGAAAATATAGGTCATTGGTACTGGGAGAACAGGTGCCCCAAGGACTGGTGCAGACCCTCCTATCTAGTCGAGATCCCGTCCATCCAGGAACTCGAACATGAGGTTATGCAGAACAAGAACAAGGTTGTGGTCCAGGAGGATGAGAAGAACTCTATCAAGGAGGTCCCGTCCACTGAACAATCCCTCGAGAACTCTCTGCAGAATAAGGAAGAGGATGATGTTAAGGTGGATGTTGGGAAGGACAACAAGAGCAAGGATGAGGTTATGGTCGAGGATGACGATAGCAAGGAAGATGATGAGGCTAAAGGTGGAAATGAGTCTTCAAATCAGAGCAGGAGCAAGAGTTGTAAGGCAATCTTGACACAGTCTGGGTTATCAAGGAGCAAGGATGTCAAGGCTATCGAGGAGCTTACCGCTGGATGTTATCGATCATTGAGACTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

461

Amino Acids

53.07

Weight (kDa)

5.84

Isoelectric Point (pI)

53.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 483, 972
AccB7I CCANNNNNTGG 2 cut(s) 495, 984
AciI CCGC 2 cut(s) 104, 1353
AclWI GGATC 2 cut(s) 517, 1006
AcuI CTGAAG 2 cut(s) 327, 816
AdeI CACNNNGTG 2 cut(s) 438, 927
AfaI GTAC 4 cut(s) 260, 470, 749, 959
AfiI CCNNNNNNNGG 4 cut(s) 322, 495, 811, 984
AgsI TTSAA 5 cut(s) 34, 79, 191, 545, 1263
AjnI CCWGG 4 cut(s) 534, 582, 1023, 1071
AluBI AGCT 5 cut(s) 7, 172, 208, 697, 1348
AluI AGCT 5 cut(s) 7, 172, 208, 697, 1348
Alw21I GWGCWC 3 cut(s) 9, 210, 699
Alw26I GTCTC 1 cut(s) 1369
AlwI GGATC 2 cut(s) 517, 1006
Ama87I CYCGRG 1 cut(s) 1124
AoxI GGCC 3 cut(s) 152, 353, 842
ApeKI GCWGC 1 cut(s) 101
AspLEI GCGC 1 cut(s) 96
AspS9I GGNCC 5 cut(s) 353, 580, 842, 1069, 1102
AsuC2I CCSGG 2 cut(s) 339, 828
AvaI CYCGRG 1 cut(s) 1124
AvaII GGWCC 3 cut(s) 580, 1069, 1102
BaeGI GKGCMC 4 cut(s) 344, 488, 833, 977
BanI GGYRCC 2 cut(s) 483, 972
BanII GRGCYC 3 cut(s) 9, 210, 699
BauI CACGAG 1 cut(s) 133
BbsI GAAGAC 1 cut(s) 1251
Bbv12I GWGCWC 3 cut(s) 9, 210, 699
BbvI GCAGC 1 cut(s) 113
BccI CCATC 5 cut(s) 133, 437, 539, 926, 1028
BciT130I CCWGG 4 cut(s) 536, 584, 1025, 1073
BcnI CCSGG 2 cut(s) 339, 828
BcoDI GTCTC 1 cut(s) 1369
BfaI CTAG 4 cut(s) 350, 515, 839, 1004
BfmI CTRYAG 3 cut(s) 286, 775, 1136
BglII AGATCT 2 cut(s) 346, 835
BisI GCNGC 1 cut(s) 102
BlsI GCNGC 1 cut(s) 103
BmcAI AGTACT 2 cut(s) 260, 749
Bme1390I CCNGG 6 cut(s) 339, 536, 584, 828, 1025, 1073
Bme18I GGWCC 3 cut(s) 580, 1069, 1102
BmeT110I CYCGRG 1 cut(s) 1124
BmgT120I GGNCC 5 cut(s) 353, 580, 842, 1069, 1102
BmiI GGNNCC 3 cut(s) 485, 974, 1104
BmrFI CCNGG 6 cut(s) 339, 536, 584, 828, 1025, 1073
BmrI ACTGGG 2 cut(s) 481, 970
BmuI ACTGGG 2 cut(s) 481, 970
BpiI GAAGAC 1 cut(s) 1251
BplI GAGNNNNNCTC 4 cut(s) 587, 619, 1073, 1105
BpmI CTGGAG 2 cut(s) 165, 654
BpuMI CCSGG 2 cut(s) 339, 828
Bsa29I ATCGAT 1 cut(s) 1366
BsaJI CCNNGG 2 cut(s) 489, 978
Bsc4I CCNNNNNNNGG 4 cut(s) 322, 495, 811, 984
Bse1I ACTGG 4 cut(s) 476, 500, 965, 989
BseBI CCWGG 4 cut(s) 536, 584, 1025, 1073
BseCI ATCGAT 1 cut(s) 1366
BseDI CCNNGG 2 cut(s) 489, 978
BseLI CCNNNNNNNGG 4 cut(s) 322, 495, 811, 984
BseMII CTCAG 3 cut(s) 203, 597, 692
BseNI ACTGG 4 cut(s) 476, 500, 965, 989
BseRI GAGGAG 3 cut(s) 218, 707, 1358
BseSI GKGCMC 4 cut(s) 344, 488, 833, 977
BseXI GCAGC 1 cut(s) 113
BsgI GTGCAG 2 cut(s) 520, 1009
BshFI GGCC 3 cut(s) 154, 355, 844
BshNI GGYRCC 2 cut(s) 483, 972
BshVI ATCGAT 1 cut(s) 1366
BsiHKAI GWGCWC 3 cut(s) 9, 210, 699
BsiHKCI CYCGRG 1 cut(s) 1124
BsiSI CCGG 2 cut(s) 338, 827
BslFI GGGAC 1 cut(s) 1088
BslI CCNNNNNNNGG 4 cut(s) 322, 495, 811, 984
BsmAI GTCTC 1 cut(s) 1369
BsmFI GGGAC 1 cut(s) 1088
BsmI GAATGC 2 cut(s) 407, 896
BsnI GGCC 3 cut(s) 154, 355, 844
BsoBI CYCGRG 1 cut(s) 1124
Bsp1286I GDGCHC 7 cut(s) 9, 210, 344, 488, 699, 833, 977
Bsp143I GATC 8 cut(s) 129, 295, 346, 522, 784, 835, 1011, 1367
BspACI CCGC 2 cut(s) 104, 1353
BspANI GGCC 3 cut(s) 154, 355, 844
BspCNI CTCAG 3 cut(s) 204, 598, 693
BspDI ATCGAT 1 cut(s) 1366
BspLI GGNNCC 3 cut(s) 485, 974, 1104
BspMAI CTGCAG 3 cut(s) 290, 779, 1140
BspPI GGATC 2 cut(s) 517, 1006
BspT107I GGYRCC 2 cut(s) 483, 972
BsrI ACTGG 4 cut(s) 476, 500, 965, 989
BssECI CCNNGG 2 cut(s) 489, 978
BssMI GATC 8 cut(s) 129, 295, 346, 522, 784, 835, 1011, 1367
BssSI CACGAG 1 cut(s) 133
BssT1I CCWWGG 2 cut(s) 489, 978
Bst2BI CACGAG 1 cut(s) 133
Bst2UI CCWGG 4 cut(s) 536, 584, 1025, 1073
Bst4CI ACNGT 3 cut(s) 241, 730, 1305
Bst6I CTCTTC 3 cut(s) 218, 707, 1143
BstDEI CTNAG 3 cut(s) 212, 606, 701
BstHHI GCGC 1 cut(s) 96
BstKTI GATC 8 cut(s) 132, 298, 349, 525, 787, 838, 1014, 1370
BstMAI GTCTC 1 cut(s) 1369
BstMBI GATC 8 cut(s) 129, 295, 346, 522, 784, 835, 1011, 1367
BstNI CCWGG 4 cut(s) 536, 584, 1025, 1073
BstSCI CCNGG 6 cut(s) 337, 534, 582, 826, 1023, 1071
BstSFI CTRYAG 3 cut(s) 286, 775, 1136
BstSLI GKGCMC 4 cut(s) 344, 488, 833, 977
BstV1I GCAGC 1 cut(s) 113
BstV2I GAAGAC 1 cut(s) 1251
BstX2I RGATCY 4 cut(s) 346, 522, 835, 1011
BstYI RGATCY 4 cut(s) 346, 522, 835, 1011
Bsu15I ATCGAT 1 cut(s) 1366
BsuRI GGCC 3 cut(s) 154, 355, 844
BsuTUI ATCGAT 1 cut(s) 1366
BtsIMutI CAGTG 1 cut(s) 1110
CfoI GCGC 1 cut(s) 96
Cfr13I GGNCC 5 cut(s) 353, 580, 842, 1069, 1102
ClaI ATCGAT 1 cut(s) 1366
CseI GACGC 2 cut(s) 71, 149
Csp6I GTAC 4 cut(s) 259, 469, 748, 958
CspCI CAANNNNNGTGG 4 cut(s) 364, 399, 853, 888
CviAII CATG 4 cut(s) 121, 548, 807, 1037
CviQI GTAC 4 cut(s) 259, 469, 748, 958
DdeI CTNAG 3 cut(s) 212, 606, 701
DpnI GATC 8 cut(s) 131, 297, 348, 524, 786, 837, 1013, 1369
DpnII GATC 8 cut(s) 129, 295, 346, 522, 784, 835, 1011, 1367
DraI TTTAAA 1 cut(s) 679
DraIII CACNNNGTG 2 cut(s) 438, 927
Eam1104I CTCTTC 3 cut(s) 218, 707, 1143
EarI CTCTTC 3 cut(s) 218, 707, 1143
Ecl136II GAGCTC 3 cut(s) 7, 208, 697
Eco130I CCWWGG 2 cut(s) 489, 978
Eco24I GRGCYC 3 cut(s) 9, 210, 699
Eco47I GGWCC 3 cut(s) 580, 1069, 1102
Eco53kI GAGCTC 3 cut(s) 7, 208, 697
Eco57I CTGAAG 2 cut(s) 327, 816
Eco88I CYCGRG 1 cut(s) 1124
EcoICRI GAGCTC 3 cut(s) 7, 208, 697
EcoO109I RGGNCCY 3 cut(s) 353, 842, 1102
EcoRII CCWGG 4 cut(s) 534, 582, 1023, 1071
EcoT14I CCWWGG 2 cut(s) 489, 978
EcoT38I GRGCYC 3 cut(s) 9, 210, 699
ErhI CCWWGG 2 cut(s) 489, 978
FaeI CATG 4 cut(s) 124, 551, 810, 1040
FalI AAGNNNNNCTT 6 cut(s) 245, 277, 734, 766, 1280, 1312
FaqI GGGAC 1 cut(s) 1088
FatI CATG 4 cut(s) 120, 547, 806, 1036
FauNDI CATATG 2 cut(s) 421, 910
Fnu4HI GCNGC 1 cut(s) 102
FriOI GRGCYC 3 cut(s) 9, 210, 699
Fsp4HI GCNGC 1 cut(s) 102
FspBI CTAG 4 cut(s) 350, 515, 839, 1004
GlaI GCGC 1 cut(s) 95
GluI GCNGC 1 cut(s) 102
GsuI CTGGAG 2 cut(s) 165, 654
HaeIII GGCC 3 cut(s) 154, 355, 844
HapII CCGG 2 cut(s) 338, 827
HgaI GACGC 2 cut(s) 71, 149
HhaI GCGC 1 cut(s) 96
Hin1II CATG 4 cut(s) 124, 551, 810, 1040
Hin6I GCGC 1 cut(s) 94
HinP1I GCGC 1 cut(s) 94
HinfI GANTC 6 cut(s) 148, 229, 596, 602, 718, 1256
HpaII CCGG 2 cut(s) 338, 827
Hpy166II GTNNAC 1 cut(s) 1110
Hpy188I TCNGA 8 cut(s) 87, 165, 395, 601, 607, 654, 884, 1269
Hpy188III TCNNGA 9 cut(s) 133, 182, 211, 520, 671, 700, 1009, 1126, 1297
Hpy8I GTNNAC 1 cut(s) 1110
HpyAV CCTTC 4 cut(s) 13, 247, 736, 1171
HpyCH4III ACNGT 3 cut(s) 241, 730, 1305
HpyCH4V TGCA 9 cut(s) 288, 375, 501, 559, 777, 864, 990, 1048, 1138
HpyF3I CTNAG 3 cut(s) 212, 606, 701
Hsp92II CATG 4 cut(s) 124, 551, 810, 1040
HspAI GCGC 1 cut(s) 94
Kzo9I GATC 8 cut(s) 129, 295, 346, 522, 784, 835, 1011, 1367
Lsp1109I GCAGC 1 cut(s) 113
MaeI CTAG 4 cut(s) 350, 515, 839, 1004
MalI GATC 8 cut(s) 131, 297, 348, 524, 786, 837, 1013, 1369
MboI GATC 8 cut(s) 129, 295, 346, 522, 784, 835, 1011, 1367
MboII GAAGA 9 cut(s) 178, 235, 320, 724, 809, 1096, 1160, 1241, 1251
MfeI CAATTG 2 cut(s) 376, 865
MflI RGATCY 4 cut(s) 346, 522, 835, 1011
MhlI GDGCHC 7 cut(s) 9, 210, 344, 488, 699, 833, 977
MluCI AATT 3 cut(s) 24, 376, 865
MlyI GAGTC 3 cut(s) 596, 605, 1265
MseI TTAA 2 cut(s) 678, 1161
MslI CAYNNNNRTG 1 cut(s) 137
MspA1I CMGCKG 2 cut(s) 104, 1355
MspI CCGG 2 cut(s) 338, 827
MspR9I CCNGG 6 cut(s) 339, 536, 584, 828, 1025, 1073
MunI CAATTG 2 cut(s) 376, 865
Mva1269I GAATGC 2 cut(s) 407, 896
MvaI CCWGG 4 cut(s) 536, 584, 1025, 1073
NciI CCSGG 2 cut(s) 339, 828
NdeI CATATG 2 cut(s) 421, 910
NdeII GATC 8 cut(s) 129, 295, 346, 522, 784, 835, 1011, 1367
NlaIII CATG 4 cut(s) 124, 551, 810, 1040
NlaIV GGNNCC 3 cut(s) 485, 974, 1104
PaeR7I CTCGAG 1 cut(s) 1124
PcsI WCGNNNNNNNCGW 3 cut(s) 140, 157, 1215
PctI GAATGC 2 cut(s) 407, 896
PfeI GAWTC 3 cut(s) 148, 229, 718
PflFI GACNNNGTC 1 cut(s) 1303
PflMI CCANNNNNTGG 2 cut(s) 495, 984
PfoI TCCNGGA 4 cut(s) 534, 582, 1023, 1071
PkrI GCNGC 1 cut(s) 103
PleI GAGTC 3 cut(s) 596, 604, 1264
PpsI GAGTC 3 cut(s) 596, 604, 1264
PpuMI RGGWCCY 1 cut(s) 1102
Psp124BI GAGCTC 3 cut(s) 9, 210, 699
Psp5II RGGWCCY 1 cut(s) 1102
Psp6I CCWGG 4 cut(s) 534, 582, 1023, 1071
PspGI CCWGG 4 cut(s) 534, 582, 1023, 1071
PspN4I GGNNCC 3 cut(s) 485, 974, 1104
PspPI GGNCC 5 cut(s) 353, 580, 842, 1069, 1102
PspPPI RGGWCCY 1 cut(s) 1102
PstI CTGCAG 3 cut(s) 290, 779, 1140
PsuI RGATCY 4 cut(s) 346, 522, 835, 1011
PsyI GACNNNGTC 1 cut(s) 1303
RsaI GTAC 4 cut(s) 260, 470, 749, 959
RsaNI GTAC 4 cut(s) 259, 469, 748, 958
RseI CAYNNNNRTG 1 cut(s) 137
SacI GAGCTC 3 cut(s) 9, 210, 699
SaqAI TTAA 2 cut(s) 678, 1161
SatI GCNGC 1 cut(s) 102
Sau3AI GATC 8 cut(s) 129, 295, 346, 522, 784, 835, 1011, 1367
Sau96I GGNCC 5 cut(s) 353, 580, 842, 1069, 1102
ScaI AGTACT 2 cut(s) 260, 749
SchI GAGTC 3 cut(s) 596, 605, 1265
ScrFI CCNGG 6 cut(s) 339, 536, 584, 828, 1025, 1073
SduI GDGCHC 7 cut(s) 9, 210, 344, 488, 699, 833, 977
SfcI CTRYAG 3 cut(s) 286, 775, 1136
Sfr274I CTCGAG 1 cut(s) 1124
SinI GGWCC 3 cut(s) 580, 1069, 1102
SlaI CTCGAG 1 cut(s) 1124
SmiMI CAYNNNNRTG 1 cut(s) 137
SmlI CTYRAG 1 cut(s) 1124
SmoI CTYRAG 1 cut(s) 1124
Sse9I AATT 3 cut(s) 24, 376, 865
SsiI CCGC 2 cut(s) 104, 1353
SspMI CTAG 4 cut(s) 350, 515, 839, 1004
SstI GAGCTC 3 cut(s) 9, 210, 699
StyD4I CCNGG 6 cut(s) 337, 534, 582, 826, 1023, 1071
StyI CCWWGG 2 cut(s) 489, 978
TaaI ACNGT 3 cut(s) 241, 730, 1305
TaqI TCGA 9 cut(s) 232, 519, 721, 1008, 1032, 1125, 1209, 1341, 1366
TasI AATT 3 cut(s) 24, 376, 865
TatI WGTACW 2 cut(s) 258, 747
TfiI GAWTC 3 cut(s) 148, 229, 718
Tru1I TTAA 2 cut(s) 678, 1161
Tru9I TTAA 2 cut(s) 678, 1161
TscAI CASTG 1 cut(s) 1117
TseI GCWGC 1 cut(s) 101
TspDTI ATGAA 6 cut(s) 30, 236, 414, 627, 725, 903
TspRI CASTG 1 cut(s) 1117
Tth111I GACNNNGTC 1 cut(s) 1303
Van91I CCANNNNNTGG 2 cut(s) 495, 984
VpaK11BI GGWCC 3 cut(s) 580, 1069, 1102
XhoI CTCGAG 1 cut(s) 1124
XspI CTAG 4 cut(s) 350, 515, 839, 1004
ZrmI AGTACT 2 cut(s) 260, 749
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.