Rh7DG306300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000653
Physical Location & Seq
Reverse (-)
35735822 .. 35736983
1162 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG306300.1

Sequence Viewer

Length: 642 bp
ATGGTAAGTACATCCCTGAGAAGGGAGCTGAAGAGACAAAGAAGAAAGCTCGAGATACTGAATCTGAACAATAAAGGCGAAGTAGAATATGTACCAAAGCAAAAAACCAAAGAGAAATTATATTTTACGGACGAGGAATATGCAAGCAGGCGCTTGATTATACCAGAGGACGAAGCCACCGAGTTTGCGGCGCAGGCGAGATGGAGATGGAAGAAGGAAAATAGAAAGCTCCACATACCGAATCTAAACAACAGAGCCGAAGTCGAGGAGCTTCGGAAAAGGCTTCAAAGAAAGACAAGCTCTGACCTTATAATAAAAGAAGACGGAGAAGTAAAAGATTATGAATATGGCTGTGGGGTTTGTGCTAACATGGATGAGAATCACTATGATTCGGACTGCCCATGGCTAGATAAACTGCCACCAGGCCAAACTATTGTTGGCCCTTACTATGACATAGTTTGCATCGGCTGTGGCCAGATTGGTGAGATGTGCTGTTCCAAGAGAGGTTCCAAGCGAGGATATGCTGTTCTCAAGTCCTGTAAATTTTGTCAGTCAGCTGGTCACTGGCCTTGGGAATGCCTTAATGGCCCCAAGATTCCGGGGCTCACGGAGGAGCTCGTCGAGGAGGTCATATCCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

213

Amino Acids

24.69

Weight (kDa)

7.97

Isoelectric Point (pI)

61.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 311
AciI CCGC 1 cut(s) 188
AcoI YGGCCR 1 cut(s) 472
AcsI RAATTY 1 cut(s) 542
AcuI CTGAAG 1 cut(s) 50
AfaI GTAC 2 cut(s) 10, 93
AfiI CCNNNNNNNGG 2 cut(s) 21, 22
AgsI TTSAA 1 cut(s) 287
AjnI CCWGG 1 cut(s) 421
AloI GAACNNNNNNTCC 2 cut(s) 510, 542
AluBI AGCT 7 cut(s) 28, 49, 229, 271, 300, 557, 616
AluI AGCT 7 cut(s) 28, 49, 229, 271, 300, 557, 616
Alw21I GWGCWC 1 cut(s) 618
Alw26I GTCTC 1 cut(s) 28
Ama87I CYCGRG 1 cut(s) 50
AoxI GGCC 5 cut(s) 424, 439, 472, 566, 586
ApoI RAATTY 1 cut(s) 542
AspLEI GCGC 2 cut(s) 153, 193
AspS9I GGNCC 2 cut(s) 440, 587
AsuC2I CCSGG 1 cut(s) 600
AsuHPI GGTGA 1 cut(s) 494
AvaI CYCGRG 1 cut(s) 50
BalI TGGCCA 1 cut(s) 474
BanII GRGCYC 2 cut(s) 606, 618
BbsI GAAGAC 1 cut(s) 327
Bbv12I GWGCWC 1 cut(s) 618
BccI CCATC 2 cut(s) 195, 201
BcgI CGANNNNNNTGC 2 cut(s) 122, 156
BciT130I CCWGG 1 cut(s) 423
BcnI CCSGG 1 cut(s) 600
BcoDI GTCTC 1 cut(s) 28
BfaI CTAG 1 cut(s) 407
BfoI RGCGCY 1 cut(s) 154
BglI GCCNNNNNGGC 1 cut(s) 585
BisI GCNGC 1 cut(s) 189
BlsI GCNGC 1 cut(s) 190
Bme1390I CCNGG 2 cut(s) 423, 600
BmeT110I CYCGRG 1 cut(s) 50
BmgT120I GGNCC 2 cut(s) 440, 587
BmiI GGNNCC 2 cut(s) 508, 589
BmrFI CCNGG 2 cut(s) 423, 600
BmsI GCATC 1 cut(s) 471
BpiI GAAGAC 1 cut(s) 327
BpuEI CTTGAG 1 cut(s) 515
BpuMI CCSGG 1 cut(s) 600
BsaBI GATNNNNATC 1 cut(s) 378
BsaJI CCNNGG 3 cut(s) 401, 569, 599
Bsc4I CCNNNNNNNGG 2 cut(s) 21, 22
Bse1I ACTGG 1 cut(s) 569
Bse8I GATNNNNATC 1 cut(s) 378
BseBI CCWGG 1 cut(s) 423
BseDI CCNNGG 3 cut(s) 401, 569, 599
BseGI GGATG 2 cut(s) 11, 379
BseJI GATNNNNATC 1 cut(s) 378
BseLI CCNNNNNNNGG 2 cut(s) 21, 22
BseMII CTCAG 1 cut(s) 8
BseNI ACTGG 1 cut(s) 569
BseRI GAGGAG 3 cut(s) 281, 626, 638
BshFI GGCC 5 cut(s) 426, 441, 474, 568, 588
BsiHKAI GWGCWC 1 cut(s) 618
BsiHKCI CYCGRG 1 cut(s) 50
BsiSI CCGG 1 cut(s) 599
BslI CCNNNNNNNGG 2 cut(s) 21, 22
BsmAI GTCTC 1 cut(s) 28
BsmI GAATGC 1 cut(s) 581
BsnI GGCC 5 cut(s) 426, 441, 474, 568, 588
BsoBI CYCGRG 1 cut(s) 50
Bsp1286I GDGCHC 2 cut(s) 606, 618
Bsp19I CCATGG 1 cut(s) 401
BspACI CCGC 1 cut(s) 188
BspANI GGCC 5 cut(s) 426, 441, 474, 568, 588
BspCNI CTCAG 1 cut(s) 9
BspLI GGNNCC 2 cut(s) 508, 589
BsrI ACTGG 1 cut(s) 569
BssECI CCNNGG 3 cut(s) 401, 569, 599
BssT1I CCWWGG 2 cut(s) 401, 569
Bst2UI CCWGG 1 cut(s) 423
Bst6I CTCTTC 1 cut(s) 26
BstC8I GCNNGC 3 cut(s) 145, 149, 195
BstDEI CTNAG 1 cut(s) 17
BstDSI CCRYGG 1 cut(s) 401
BstF5I GGATG 2 cut(s) 11, 379
BstH2I RGCGCY 1 cut(s) 154
BstHHI GCGC 2 cut(s) 153, 193
BstMAI GTCTC 1 cut(s) 28
BstMWI GCNNNNNNNGC 2 cut(s) 194, 585
BstNI CCWGG 1 cut(s) 423
BstSCI CCNGG 2 cut(s) 421, 598
BstV2I GAAGAC 1 cut(s) 327
BsuRI GGCC 5 cut(s) 426, 441, 474, 568, 588
BtgI CCRYGG 1 cut(s) 401
BtsCI GGATG 2 cut(s) 11, 379
BtsIMutI CAGTG 1 cut(s) 562
Cac8I GCNNGC 3 cut(s) 145, 149, 195
CfoI GCGC 2 cut(s) 153, 193
Cfr13I GGNCC 2 cut(s) 440, 587
Csp6I GTAC 2 cut(s) 9, 92
CspCI CAANNNNNGTGG 2 cut(s) 166, 201
CviAII CATG 2 cut(s) 370, 402
CviQI GTAC 2 cut(s) 9, 92
DdeI CTNAG 1 cut(s) 17
EaeI YGGCCR 1 cut(s) 472
Eam1104I CTCTTC 1 cut(s) 26
EarI CTCTTC 1 cut(s) 26
Ecl136II GAGCTC 1 cut(s) 616
Eco130I CCWWGG 2 cut(s) 401, 569
Eco24I GRGCYC 2 cut(s) 606, 618
Eco53kI GAGCTC 1 cut(s) 616
Eco57I CTGAAG 1 cut(s) 50
Eco88I CYCGRG 1 cut(s) 50
EcoICRI GAGCTC 1 cut(s) 616
EcoRII CCWGG 1 cut(s) 421
EcoT14I CCWWGG 2 cut(s) 401, 569
EcoT38I GRGCYC 2 cut(s) 606, 618
ErhI CCWWGG 2 cut(s) 401, 569
FaeI CATG 2 cut(s) 373, 405
FatI CATG 2 cut(s) 369, 401
Fnu4HI GCNGC 1 cut(s) 189
FokI GGATG 1 cut(s) 386
FriOI GRGCYC 2 cut(s) 606, 618
Fsp4HI GCNGC 1 cut(s) 189
FspBI CTAG 1 cut(s) 407
GlaI GCGC 2 cut(s) 152, 192
GluI GCNGC 1 cut(s) 189
HaeII RGCGCY 1 cut(s) 154
HaeIII GGCC 5 cut(s) 426, 441, 474, 568, 588
HapII CCGG 1 cut(s) 599
HhaI GCGC 2 cut(s) 153, 193
Hin1II CATG 2 cut(s) 373, 405
Hin6I GCGC 2 cut(s) 151, 191
HinP1I GCGC 2 cut(s) 151, 191
HinfI GANTC 5 cut(s) 61, 241, 379, 389, 595
HpaII CCGG 1 cut(s) 599
HphI GGTGA 1 cut(s) 494
Hpy188I TCNGA 4 cut(s) 66, 276, 304, 394
Hpy188III TCNNGA 2 cut(s) 52, 639
Hpy99I CGWCG 1 cut(s) 623
HpyAV CCTTC 2 cut(s) 15, 208
HpyCH4V TGCA 2 cut(s) 143, 462
HpyF10VI GCNNNNNNNGC 2 cut(s) 194, 585
HpyF3I CTNAG 1 cut(s) 17
Hsp92II CATG 2 cut(s) 373, 405
HspAI GCGC 2 cut(s) 151, 191
LmnI GCTCC 4 cut(s) 25, 234, 268, 613
LweI GCATC 1 cut(s) 471
MaeI CTAG 1 cut(s) 407
MaeIII GTNAC 1 cut(s) 560
MboII GAAGA 4 cut(s) 43, 54, 223, 332
MhlI GDGCHC 2 cut(s) 606, 618
MlsI TGGCCA 1 cut(s) 474
MluCI AATT 2 cut(s) 116, 542
MluNI TGGCCA 1 cut(s) 474
MnlI CCTC 8 cut(s) 127, 160, 259, 497, 509, 604, 616, 619
Mox20I TGGCCA 1 cut(s) 474
MscI TGGCCA 1 cut(s) 474
MseI TTAA 1 cut(s) 582
Msp20I TGGCCA 1 cut(s) 474
MspA1I CMGCKG 1 cut(s) 557
MspI CCGG 1 cut(s) 599
MspR9I CCNGG 2 cut(s) 423, 600
Mva1269I GAATGC 1 cut(s) 581
MvaI CCWGG 1 cut(s) 423
MwoI GCNNNNNNNGC 2 cut(s) 194, 585
NciI CCSGG 1 cut(s) 600
NcoI CCATGG 1 cut(s) 401
NlaIII CATG 2 cut(s) 373, 405
NlaIV GGNNCC 2 cut(s) 508, 589
NmuCI GTSAC 1 cut(s) 560
PaeR7I CTCGAG 1 cut(s) 50
PcsI WCGNNNNNNNCGW 1 cut(s) 177
PctI GAATGC 1 cut(s) 581
PfeI GAWTC 5 cut(s) 61, 241, 379, 389, 595
PkrI GCNGC 1 cut(s) 190
PsiI TTATAA 1 cut(s) 311
Psp124BI GAGCTC 1 cut(s) 618
Psp6I CCWGG 1 cut(s) 421
PspGI CCWGG 1 cut(s) 421
PspN4I GGNNCC 2 cut(s) 508, 589
PspPI GGNCC 2 cut(s) 440, 587
PvuII CAGCTG 1 cut(s) 557
RsaI GTAC 2 cut(s) 10, 93
RsaNI GTAC 2 cut(s) 9, 92
SacI GAGCTC 1 cut(s) 618
SaqAI TTAA 1 cut(s) 582
SatI GCNGC 1 cut(s) 189
Sau96I GGNCC 2 cut(s) 440, 587
ScrFI CCNGG 2 cut(s) 423, 600
SduI GDGCHC 2 cut(s) 606, 618
SfaNI GCATC 1 cut(s) 471
Sfr274I CTCGAG 1 cut(s) 50
SlaI CTCGAG 1 cut(s) 50
SmlI CTYRAG 2 cut(s) 50, 530
SmoI CTYRAG 2 cut(s) 50, 530
Sse9I AATT 2 cut(s) 116, 542
SsiI CCGC 1 cut(s) 188
SspMI CTAG 1 cut(s) 407
SstI GAGCTC 1 cut(s) 618
StyD4I CCNGG 2 cut(s) 421, 598
StyI CCWWGG 2 cut(s) 401, 569
TaqI TCGA 3 cut(s) 51, 264, 621
TasI AATT 2 cut(s) 116, 542
TatI WGTACW 1 cut(s) 8
TauI GCSGC 1 cut(s) 191
TfiI GAWTC 5 cut(s) 61, 241, 379, 389, 595
Tru1I TTAA 1 cut(s) 582
Tru9I TTAA 1 cut(s) 582
TscAI CASTG 1 cut(s) 569
TseFI GTSAC 1 cut(s) 560
Tsp45I GTSAC 1 cut(s) 560
TspDTI ATGAA 1 cut(s) 357
TspGWI ACGGA 3 cut(s) 143, 339, 623
TspRI CASTG 1 cut(s) 569
XapI RAATTY 1 cut(s) 542
XcmI CCANNNNNNNNNTGG 1 cut(s) 434
XhoI CTCGAG 1 cut(s) 50
XspI CTAG 1 cut(s) 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.