Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0000653

Physical Location & Seq

Genomic Coordinates Reverse (-)

63532507 .. 63538130

Gene Structure 5624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG421200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGAATGCGAAACCTCGATGCCGGAAATTATCAAGGAAGCCAAGGAGGCGGATCTTCATGGATCACTAGCTGCGAAAATCCATACTGTTTTTGACAGATCAAGGTGGGAAGAACCTCAAAAGAGATCAATGACTATTGGTCTGGGAAAATCTGAAATGTATAGGGATTTGCTGCACTCTTTGCAAGAGGTTGGGTGCCAGATGAGGCTGCTGGGCATTAGCAGTGTTCCTGAAGCCAACAAGAACAGGACTCATGCAGGTAGCAAGGGGGAAGAATTAAAGGGTACTGGTTATACTTTGGCCCAAATTCTGATAGACATCGTACGTTTCGCATCAAAAGTGGGTTTTCATATTGATTTGGATTCCATCGATTCCCGTGATCGGAAGATGCTGAAAGATGAGACCAAGGCTGGTGAATCGGAGGACGAAGAATCTGAGGACCAGGAAACCAAGGATGAGGATCTGAATCTGGCTGTTGAGAACTGCTCTGATGGTGAACAATTTTTAAAACTTTGTCAGATCAAAACAAATGATGCTGGAGTGTCTTATGTCCGTATGGGCGACTATGTGTATGTGAAAAAGGAAGAAAACAGTGAAGATGGATATAGTGAAGAAGAAGGAGAAGGTTGTCCCGTTTGTTTTGACCTGGATCACAATAACAATAACTGCCCATGGCTAGTTAATGTTCCACCAGGTAAAACAGTTGGGCGTCTCTATGACATACAATGCAAGGGTTGTGATAAGCTGGGACTTGCATGCTGTTCTAAGGGAGTACGTGCTGTTCTCAGGAGGTGTGGTCGTTGTTTTGATTTTGGTCACTGGGGGGACGACTGCCCCAGCTATAAGTATATGCCCCTTTCGGCCTTCCCAAATTATCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

293

Amino Acids

32.89

Weight (kDa)

4.95

Isoelectric Point (pI)

51.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000653)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02040 FvH4_6g20312 FvH4_7g29590 FvH4_7g29800 FvH4_7g30370 FvH4_7g30400 FvH4_7g30400 FvH4_7g30400 FvH4_7g30610
rosa_chinensis	RchiOBHm_Chr1g0362141 RchiOBHm_Chr1g0378631 RchiOBHm_Chr1g0378661 RchiOBHm_Chr1g0378841 RchiOBHm_Chr2g0149561
rosa_laevigata	RLG00000002620 RLG00000002622 RLG00000002629 RLG00000003999 RLG00000013563 RLG00000020408 RLG00000020410 RLG00000020421 RLG00000026416 RLG00000026417 RLG00000027654
rosa_multiflora	Rmu_sc0006867.1_g000011 Rmu_sc0006867.1_g000015 Rmu_sc0008712.1_g000008 Rmu_sc0014005.1_g000010
rosa_roxburghii	Rroxscaffold_3G00243880 Rroxscaffold_4G00280330 Rroxscaffold_4G00280340 Rroxscaffold_4G00280410 Rroxscaffold_7G00186160
rosa_rugosa	Rorug01G0302500 Rorug01G0302600 Rorug01G0410200 Rorug01G0410300 Rorug02G0404800.1 Rorug02G0404900 Rorug02G0412300 Rorug07G0158200.1
rosa_samantha	Rh1AG304700 Rh1AG431600 Rh1AG431700 Rh1AG432200 Rh1AG432300 Rh1BG263900 Rh1BG389900 Rh1BG390100 Rh1BG390900 Rh1BG424800 Rh1CG402300 Rh1CG403200 Rh1CG403300 Rh1CG403600 Rh1DG293900 Rh1DG420100 Rh1DG421100 Rh1DG421200 Rh1DG422000 Rh1DG457600 Rh2AG463400 Rh2BG476500 Rh2BG484800 Rh2CG450200 Rh2DG485200 Rh2DG494000 Rh6CG183000 Rh6DG174400 Rh7AG294000 Rh7CG314000 Rh7DG296800 Rh7DG306300
rosa_wichuraiana	Rw1G037740 Rw1G037820 Rw2G038540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	248
AccB1I	GGYRCC	1 cut(s)	195
AciI	CCGC	1 cut(s)	50
AclWI	GGATC	4 cut(s)	60, 70, 468, 657
AcsI	RAATTY	1 cut(s)	306
AcuI	CTGAAG	1 cut(s)	252
AcyI	GRCGYC	1 cut(s)	709
AfaI	GTAC	3 cut(s)	286, 324, 774
AfiI	CCNNNNNNNGG	1 cut(s)	381
AhdI	GACNNNNNGTC	1 cut(s)	138
AjnI	CCWGG	3 cut(s)	441, 645, 691
AluBI	AGCT	3 cut(s)	71, 745, 840
AluI	AGCT	3 cut(s)	71, 745, 840
Alw26I	GTCTC	2 cut(s)	395, 716
AlwI	GGATC	4 cut(s)	60, 70, 468, 657
AoxI	GGCC	2 cut(s)	300, 861
ApeKI	GCWGC	3 cut(s)	71, 172, 208
ApoI	RAATTY	1 cut(s)	306
AspS9I	GGNCC	2 cut(s)	301, 439
AsuHPI	GGTGA	2 cut(s)	425, 506
AvaII	GGWCC	1 cut(s)	439
BanI	GGYRCC	1 cut(s)	195
BbvI	GCAGC	3 cut(s)	58, 159, 195
BccI	CCATC	3 cut(s)	374, 485, 593
BciT130I	CCWGG	3 cut(s)	443, 647, 693
BcoDI	GTCTC	2 cut(s)	395, 716
BfaI	CTAG	2 cut(s)	68, 677
BfuAI	ACCTGC	1 cut(s)	248
BglI	GCCNNNNNGGC	1 cut(s)	47
BisI	GCNGC	3 cut(s)	72, 173, 209
BlsI	GCNGC	3 cut(s)	73, 174, 210
Bme1390I	CCNGG	3 cut(s)	443, 647, 693
Bme18I	GGWCC	1 cut(s)	439
BmeRI	GACNNNNNGTC	1 cut(s)	138
BmgT120I	GGNCC	2 cut(s)	301, 439
BmiI	GGNNCC	1 cut(s)	197
BmrFI	CCNGG	3 cut(s)	443, 647, 693
BmrI	ACTGGG	1 cut(s)	829
BmsI	GCATC	4 cut(s)	9, 341, 378, 523
BmuI	ACTGGG	1 cut(s)	829
BplI	GAGNNNNNCTC	2 cut(s)	470, 502
BpmI	CTGGAG	1 cut(s)	558
Bsa29I	ATCGAT	1 cut(s)	369
BsaAI	YACGTR	1 cut(s)	776
BsaBI	GATNNNNATC	3 cut(s)	317, 459, 465
BsaHI	GRCGYC	1 cut(s)	709
BsaI	GGTCTC	1 cut(s)	395
BsaJI	CCNNGG	4 cut(s)	42, 405, 450, 671
BsaXI	ACNNNNNCTCC	2 cut(s)	781, 811
Bsc4I	CCNNNNNNNGG	1 cut(s)	381
Bse1I	ACTGG	2 cut(s)	292, 824
Bse8I	GATNNNNATC	3 cut(s)	317, 459, 465
BseBI	CCWGG	3 cut(s)	443, 647, 693
BseCI	ATCGAT	1 cut(s)	369
BseDI	CCNNGG	4 cut(s)	42, 405, 450, 671
BseGI	GGATG	1 cut(s)	460
BseJI	GATNNNNATC	3 cut(s)	317, 459, 465
BseLI	CCNNNNNNNGG	1 cut(s)	381
BseMII	CTCAG	2 cut(s)	426, 799
BseNI	ACTGG	2 cut(s)	292, 824
BseXI	GCAGC	3 cut(s)	58, 159, 195
BseYI	CCCAGC	3 cut(s)	211, 745, 836
BsgI	GTGCAG	1 cut(s)	158
BshFI	GGCC	2 cut(s)	302, 863
BshNI	GGYRCC	1 cut(s)	195
BshVI	ATCGAT	1 cut(s)	369
BsiSI	CCGG	1 cut(s)	23
BsiWI	CGTACG	1 cut(s)	322
BslFI	GGGAC	3 cut(s)	615, 762, 839
BslI	CCNNNNNNNGG	1 cut(s)	381
BsmAI	GTCTC	2 cut(s)	395, 716
BsmBI	CGTCTC	1 cut(s)	716
BsmFI	GGGAC	3 cut(s)	615, 762, 839
BsmI	GAATGC	1 cut(s)	11
BsnI	GGCC	2 cut(s)	302, 863
Bso31I	GGTCTC	1 cut(s)	395
Bsp143I	GATC	8 cut(s)	52, 62, 98, 125, 379, 460, 519, 649
Bsp19I	CCATGG	1 cut(s)	671
BspACI	CCGC	1 cut(s)	50
BspANI	GGCC	2 cut(s)	302, 863
BspCNI	CTCAG	2 cut(s)	427, 798
BspDI	ATCGAT	1 cut(s)	369
BspLI	GGNNCC	1 cut(s)	197
BspMI	ACCTGC	1 cut(s)	248
BspPI	GGATC	4 cut(s)	60, 70, 468, 657
BspT107I	GGYRCC	1 cut(s)	195
BspTNI	GGTCTC	1 cut(s)	395
BsrI	ACTGG	2 cut(s)	292, 824
BssECI	CCNNGG	4 cut(s)	42, 405, 450, 671
BssMI	GATC	8 cut(s)	52, 62, 98, 125, 379, 460, 519, 649
BssNI	GRCGYC	1 cut(s)	709
BssT1I	CCWWGG	4 cut(s)	42, 405, 450, 671
Bst2UI	CCWGG	3 cut(s)	443, 647, 693
Bst4CI	ACNGT	3 cut(s)	88, 593, 703
BstACI	GRCGYC	1 cut(s)	709
BstAPI	GCANNNNNTGC	1 cut(s)	181
BstBAI	YACGTR	1 cut(s)	776
BstC8I	GCNNGC	1 cut(s)	757
BstDEI	CTNAG	3 cut(s)	435, 765, 785
BstDSI	CCRYGG	1 cut(s)	671
BstF5I	GGATG	1 cut(s)	460
BstKTI	GATC	8 cut(s)	55, 65, 101, 128, 382, 463, 522, 652
BstMAI	GTCTC	2 cut(s)	395, 716
BstMBI	GATC	8 cut(s)	52, 62, 98, 125, 379, 460, 519, 649
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 181
BstNI	CCWGG	3 cut(s)	443, 647, 693
BstNSI	RCATGY	1 cut(s)	759
BstSCI	CCNGG	3 cut(s)	441, 645, 691
BstV1I	GCAGC	3 cut(s)	58, 159, 195
BstX2I	RGATCY	2 cut(s)	52, 460
BstYI	RGATCY	2 cut(s)	52, 460
Bsu15I	ATCGAT	1 cut(s)	369
BsuRI	GGCC	2 cut(s)	302, 863
BsuTUI	ATCGAT	1 cut(s)	369
BtgI	CCRYGG	1 cut(s)	671
BtsCI	GGATG	1 cut(s)	460
BtsI	GCAGTG	1 cut(s)	229
BtsIMutI	CAGTG	3 cut(s)	229, 598, 817
BveI	ACCTGC	1 cut(s)	248
Cac8I	GCNNGC	1 cut(s)	757
Cfr13I	GGNCC	2 cut(s)	301, 439
ClaI	ATCGAT	1 cut(s)	369
CseI	GACGC	1 cut(s)	698
CsiI	ACCWGGT	1 cut(s)	691
Csp6I	GTAC	3 cut(s)	285, 323, 773
CviAII	CATG	5 cut(s)	59, 254, 672, 756, 879
CviQI	GTAC	3 cut(s)	285, 323, 773
DdeI	CTNAG	3 cut(s)	435, 765, 785
DpnI	GATC	8 cut(s)	54, 64, 100, 127, 381, 462, 521, 651
DpnII	GATC	8 cut(s)	52, 62, 98, 125, 379, 460, 519, 649
DraI	TTTAAA	1 cut(s)	507
DriI	GACNNNNNGTC	1 cut(s)	138
Eam1105I	GACNNNNNGTC	1 cut(s)	138
EciI	GGCGGA	1 cut(s)	65
Eco130I	CCWWGG	4 cut(s)	42, 405, 450, 671
Eco31I	GGTCTC	1 cut(s)	395
Eco47I	GGWCC	1 cut(s)	439
Eco57I	CTGAAG	1 cut(s)	252
EcoRII	CCWGG	3 cut(s)	441, 645, 691
EcoT14I	CCWWGG	4 cut(s)	42, 405, 450, 671
ErhI	CCWWGG	4 cut(s)	42, 405, 450, 671
Esp3I	CGTCTC	1 cut(s)	716
FaeI	CATG	5 cut(s)	62, 257, 675, 759, 882
FaqI	GGGAC	3 cut(s)	615, 762, 839
FatI	CATG	5 cut(s)	58, 253, 671, 755, 878
Fnu4HI	GCNGC	3 cut(s)	72, 173, 209
FokI	GGATG	1 cut(s)	467
Fsp4HI	GCNGC	3 cut(s)	72, 173, 209
FspBI	CTAG	2 cut(s)	68, 677
GluI	GCNGC	3 cut(s)	72, 173, 209
GsaI	CCCAGC	3 cut(s)	215, 749, 840
GsuI	CTGGAG	1 cut(s)	558
HaeIII	GGCC	2 cut(s)	302, 863
HapII	CCGG	1 cut(s)	23
HgaI	GACGC	1 cut(s)	698
Hin1I	GRCGYC	1 cut(s)	709
Hin1II	CATG	5 cut(s)	62, 257, 675, 759, 882
HinfI	GANTC	6 cut(s)	250, 362, 371, 416, 431, 466
HpaII	CCGG	1 cut(s)	23
HphI	GGTGA	2 cut(s)	425, 506
Hpy166II	GTNNAC	1 cut(s)	497
Hpy188I	TCNGA	8 cut(s)	154, 312, 384, 421, 436, 465, 490, 519
Hpy188III	TCNNGA	2 cut(s)	230, 787
Hpy8I	GTNNAC	1 cut(s)	497
HpyAV	CCTTC	3 cut(s)	611, 617, 874
HpyCH4III	ACNGT	3 cut(s)	88, 593, 703
HpyCH4IV	ACGT	2 cut(s)	325, 775
HpyCH4V	TGCA	5 cut(s)	175, 184, 257, 729, 755
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 181
HpyF3I	CTNAG	3 cut(s)	435, 765, 785
HpySE526I	ACGT	2 cut(s)	325, 775
Hsp92I	GRCGYC	1 cut(s)	709
Hsp92II	CATG	5 cut(s)	62, 257, 675, 759, 882
Kzo9I	GATC	8 cut(s)	52, 62, 98, 125, 379, 460, 519, 649
Lsp1109I	GCAGC	3 cut(s)	58, 159, 195
LweI	GCATC	4 cut(s)	9, 341, 378, 523
MabI	ACCWGGT	1 cut(s)	691
MaeI	CTAG	2 cut(s)	68, 677
MaeII	ACGT	2 cut(s)	325, 775
MaeIII	GTNAC	1 cut(s)	815
MalI	GATC	8 cut(s)	54, 64, 100, 127, 381, 462, 521, 651
MboI	GATC	8 cut(s)	52, 62, 98, 125, 379, 460, 519, 649
MboII	GAAGA	9 cut(s)	47, 122, 284, 397, 440, 596, 608, 623, 626
MflI	RGATCY	2 cut(s)	52, 460
MluCI	AATT	5 cut(s)	27, 275, 306, 500, 871
MlyI	GAGTC	1 cut(s)	244
MnlI	CCTC	9 cut(s)	25, 40, 126, 181, 198, 415, 430, 451, 783
MseI	TTAA	3 cut(s)	278, 506, 681
MspI	CCGG	1 cut(s)	23
MspR9I	CCNGG	3 cut(s)	443, 647, 693
Mva1269I	GAATGC	1 cut(s)	11
MvaI	CCWGG	3 cut(s)	443, 647, 693
MwoI	GCNNNNNNNGC	2 cut(s)	47, 181
NcoI	CCATGG	1 cut(s)	671
NdeII	GATC	8 cut(s)	52, 62, 98, 125, 379, 460, 519, 649
NlaIII	CATG	5 cut(s)	62, 257, 675, 759, 882
NlaIV	GGNNCC	1 cut(s)	197
NmuCI	GTSAC	1 cut(s)	815
NspI	RCATGY	1 cut(s)	759
PaeI	GCATGC	1 cut(s)	759
PctI	GAATGC	1 cut(s)	11
PfeI	GAWTC	5 cut(s)	362, 371, 416, 431, 466
Pfl23II	CGTACG	1 cut(s)	322
PkrI	GCNGC	3 cut(s)	73, 174, 210
PleI	GAGTC	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	244
Ppu21I	YACGTR	1 cut(s)	776
Psp6I	CCWGG	3 cut(s)	441, 645, 691
PspFI	CCCAGC	3 cut(s)	211, 745, 836
PspGI	CCWGG	3 cut(s)	441, 645, 691
PspLI	CGTACG	1 cut(s)	322
PspN4I	GGNNCC	1 cut(s)	197
PspPI	GGNCC	2 cut(s)	301, 439
PsrI	GAACNNNNNNTAC	2 cut(s)	765, 797
PsuI	RGATCY	2 cut(s)	52, 460
RsaI	GTAC	3 cut(s)	286, 324, 774
RsaNI	GTAC	3 cut(s)	285, 323, 773
SaqAI	TTAA	3 cut(s)	278, 506, 681
SatI	GCNGC	3 cut(s)	72, 173, 209
Sau3AI	GATC	8 cut(s)	52, 62, 98, 125, 379, 460, 519, 649
Sau96I	GGNCC	2 cut(s)	301, 439
SchI	GAGTC	1 cut(s)	244
ScrFI	CCNGG	3 cut(s)	443, 647, 693
SexAI	ACCWGGT	1 cut(s)	691
SfaNI	GCATC	4 cut(s)	9, 341, 378, 523
SinI	GGWCC	1 cut(s)	439
SphI	GCATGC	1 cut(s)	759
Sse9I	AATT	5 cut(s)	27, 275, 306, 500, 871
SsiI	CCGC	1 cut(s)	50
SspMI	CTAG	2 cut(s)	68, 677
StyD4I	CCNGG	3 cut(s)	441, 645, 691
StyI	CCWWGG	4 cut(s)	42, 405, 450, 671
TaaI	ACNGT	3 cut(s)	88, 593, 703
TaiI	ACGT	2 cut(s)	328, 778
TaqI	TCGA	2 cut(s)	17, 369
TasI	AATT	5 cut(s)	27, 275, 306, 500, 871
TfiI	GAWTC	5 cut(s)	362, 371, 416, 431, 466
Tru1I	TTAA	3 cut(s)	278, 506, 681
Tru9I	TTAA	3 cut(s)	278, 506, 681
TscAI	CASTG	3 cut(s)	229, 598, 824
TseFI	GTSAC	1 cut(s)	815
TseI	GCWGC	3 cut(s)	71, 172, 208
Tsp45I	GTSAC	1 cut(s)	815
TspDTI	ATGAA	2 cut(s)	47, 338
TspGWI	ACGGA	1 cut(s)	542
TspRI	CASTG	3 cut(s)	229, 598, 824
VpaK11BI	GGWCC	1 cut(s)	439
XapI	RAATTY	1 cut(s)	306
XceI	RCATGY	1 cut(s)	759
XspI	CTAG	2 cut(s)	68, 677

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.