Rh1AG304700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000653
Physical Location & Seq
Reverse (-)
53688545 .. 53694503
5959 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG304700.1

Sequence Viewer

Length: 657 bp
ATGCTGAATGATGAGACCGCGACTCATGTAATGGAATGGGAACCTATGGGATCGGATCTCTTGGATGATCGAGTTGAGAAGAAGCTGCGGGAATATTTCAAATTACTGGAGGACAAGGGATGTTCTTCCTCGGATATGGATGTGGCTGACAAGAACAGGACTCAAGGACAAAGCGATAATATCAAGGACGAAGAATCTGAGGACAATGAATCTGAGGACCAGGAAACTGAGGACGAGGATCCGAATCTGGCTGTTGAGAACGGCTGCGATGGTGAAAAATTATTAGGTCAGATGAAAACAAATGATGCTGGAGAGTCTTATCTCCGTATGGGCGACTATGTGTCTGTGTTTGTGAAAGACTCTAAAAAGGAAGAAATCAGAGACGAAGAAGAAGCAGAAGACGGTTGTCCCATCTGTCTTGGGGACCACTGTAACTTGGAATGCCCATGGCGAGATAATGTTCCACCAGGCCAACAAGTTGGGCGTCTCTATGACATAAAATGCAAGGGTTGTGGTAAGTGGGGACTTGCATGCTGTGCTGAGGGAGGACTTGCTGTTCTCAGGAGGTGTGGTCGTTGTTTTGATTTTGGTCACTGGGGGGACGTCTGCCCCAACTATAAGTATATGCCCCTTGCGGCCTTCCCAAATTATCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

218

Amino Acids

24.59

Weight (kDa)

4.36

Isoelectric Point (pI)

48.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 606
AccII CGCG 1 cut(s) 20
AciI CCGC 3 cut(s) 18, 88, 635
AclWI GGATC 4 cut(s) 58, 63, 233, 246
AcyI GRCGYC 2 cut(s) 484, 603
AgsI TTSAA 1 cut(s) 100
AhdI GACNNNNNGTC 1 cut(s) 340
AjnI CCWGG 2 cut(s) 219, 466
AloI GAACNNNNNNTCC 2 cut(s) 540, 572
AluBI AGCT 1 cut(s) 85
AluI AGCT 1 cut(s) 85
Alw26I GTCTC 3 cut(s) 8, 375, 491
AlwI GGATC 4 cut(s) 58, 63, 233, 246
AoxI GGCC 2 cut(s) 469, 636
ApeKI GCWGC 2 cut(s) 85, 264
AspS9I GGNCC 2 cut(s) 217, 424
AsuHPI GGTGA 1 cut(s) 284
AvaII GGWCC 2 cut(s) 217, 424
BamHI GGATCC 1 cut(s) 238
BbsI GAAGAC 1 cut(s) 405
BbvCI CCTCAGC 1 cut(s) 540
BbvI GCAGC 2 cut(s) 72, 251
BccI CCATC 2 cut(s) 263, 419
BceAI ACGGC 1 cut(s) 277
BciT130I CCWGG 2 cut(s) 221, 468
BcoDI GTCTC 3 cut(s) 8, 375, 491
BisI GCNGC 3 cut(s) 86, 265, 636
BlsI GCNGC 3 cut(s) 87, 266, 637
Bme1390I CCNGG 2 cut(s) 221, 468
Bme18I GGWCC 2 cut(s) 217, 424
BmeRI GACNNNNNGTC 1 cut(s) 340
BmgT120I GGNCC 2 cut(s) 217, 424
BmiI GGNNCC 3 cut(s) 42, 240, 425
BmrFI CCNGG 2 cut(s) 221, 468
BmrI ACTGGG 1 cut(s) 604
BmsI GCATC 1 cut(s) 295
BmuI ACTGGG 1 cut(s) 604
BoxI GACNNNNGTC 1 cut(s) 405
BpiI GAAGAC 1 cut(s) 405
BpmI CTGGAG 2 cut(s) 128, 330
Bpu10I CCTNAGC 1 cut(s) 540
BpuEI CTTGAG 1 cut(s) 147
BsaBI GATNNNNATC 1 cut(s) 243
BsaHI GRCGYC 2 cut(s) 484, 603
BsaI GGTCTC 1 cut(s) 8
BsaJI CCNNGG 2 cut(s) 129, 446
BsaXI ACNNNNNCTCC 2 cut(s) 556, 586
Bse1I ACTGG 2 cut(s) 111, 599
Bse8I GATNNNNATC 1 cut(s) 243
BseBI CCWGG 2 cut(s) 221, 468
BseDI CCNNGG 2 cut(s) 129, 446
BseGI GGATG 3 cut(s) 70, 125, 145
BseJI GATNNNNATC 1 cut(s) 243
BseMII CTCAG 5 cut(s) 189, 204, 219, 531, 574
BseNI ACTGG 2 cut(s) 111, 599
BseXI GCAGC 2 cut(s) 72, 251
Bsh1236I CGCG 1 cut(s) 20
BshFI GGCC 2 cut(s) 471, 638
BslFI GGGAC 4 cut(s) 393, 437, 537, 614
BsmAI GTCTC 3 cut(s) 8, 375, 491
BsmBI CGTCTC 2 cut(s) 375, 491
BsmFI GGGAC 4 cut(s) 393, 437, 537, 614
BsmI GAATGC 1 cut(s) 446
BsnI GGCC 2 cut(s) 471, 638
Bso31I GGTCTC 1 cut(s) 8
Bsp143I GATC 4 cut(s) 50, 55, 67, 238
Bsp19I CCATGG 1 cut(s) 446
BspACI CCGC 3 cut(s) 18, 88, 635
BspANI GGCC 2 cut(s) 471, 638
BspCNI CTCAG 5 cut(s) 190, 205, 220, 532, 573
BspFNI CGCG 1 cut(s) 20
BspLI GGNNCC 3 cut(s) 42, 240, 425
BspPI GGATC 4 cut(s) 58, 63, 233, 246
BspTNI GGTCTC 1 cut(s) 8
BsrI ACTGG 2 cut(s) 111, 599
BssECI CCNNGG 2 cut(s) 129, 446
BssMI GATC 4 cut(s) 50, 55, 67, 238
BssNI GRCGYC 2 cut(s) 484, 603
BssT1I CCWWGG 1 cut(s) 446
Bst2UI CCWGG 2 cut(s) 221, 468
Bst4CI ACNGT 2 cut(s) 404, 431
BstACI GRCGYC 2 cut(s) 484, 603
BstAPI GCANNNNNTGC 1 cut(s) 536
BstC8I GCNNGC 1 cut(s) 532
BstDEI CTNAG 5 cut(s) 198, 213, 228, 540, 560
BstDSI CCRYGG 1 cut(s) 446
BstF5I GGATG 3 cut(s) 70, 125, 145
BstFNI CGCG 1 cut(s) 20
BstKTI GATC 4 cut(s) 53, 58, 70, 241
BstMAI GTCTC 3 cut(s) 8, 375, 491
BstMBI GATC 4 cut(s) 50, 55, 67, 238
BstMWI GCNNNNNNNGC 1 cut(s) 536
BstNI CCWGG 2 cut(s) 221, 468
BstNSI RCATGY 1 cut(s) 534
BstPAI GACNNNNGTC 1 cut(s) 405
BstSCI CCNGG 2 cut(s) 219, 466
BstUI CGCG 1 cut(s) 20
BstV1I GCAGC 2 cut(s) 72, 251
BstV2I GAAGAC 1 cut(s) 405
BstX2I RGATCY 2 cut(s) 55, 238
BstXI CCANNNNNNTGG 1 cut(s) 479
BstYI RGATCY 2 cut(s) 55, 238
BsuRI GGCC 2 cut(s) 471, 638
BtgI CCRYGG 1 cut(s) 446
BtgZI GCGATG 1 cut(s) 282
BtsCI GGATG 3 cut(s) 70, 125, 145
BtsIMutI CAGTG 2 cut(s) 427, 592
Cac8I GCNNGC 1 cut(s) 532
Cfr13I GGNCC 2 cut(s) 217, 424
CseI GACGC 1 cut(s) 473
CspCI CAANNNNNGTGG 2 cut(s) 493, 528
CviAII CATG 4 cut(s) 26, 447, 531, 654
CviJI RGCY 6 cut(s) 85, 146, 251, 264, 471, 638
CviKI_1 RGCY 6 cut(s) 85, 146, 251, 264, 471, 638
DdeI CTNAG 5 cut(s) 198, 213, 228, 540, 560
DpnI GATC 4 cut(s) 52, 57, 69, 240
DpnII GATC 4 cut(s) 50, 55, 67, 238
DriI GACNNNNNGTC 1 cut(s) 340
Eam1105I GACNNNNNGTC 1 cut(s) 340
Eco130I CCWWGG 1 cut(s) 446
Eco31I GGTCTC 1 cut(s) 8
Eco47I GGWCC 2 cut(s) 217, 424
EcoRII CCWGG 2 cut(s) 219, 466
EcoT14I CCWWGG 1 cut(s) 446
ErhI CCWWGG 1 cut(s) 446
Esp3I CGTCTC 2 cut(s) 375, 491
FaeI CATG 4 cut(s) 29, 450, 534, 657
FaqI GGGAC 4 cut(s) 393, 437, 537, 614
FatI CATG 4 cut(s) 25, 446, 530, 653
FauI CCCGC 1 cut(s) 81
Fnu4HI GCNGC 3 cut(s) 86, 265, 636
FokI GGATG 3 cut(s) 77, 132, 152
Fsp4HI GCNGC 3 cut(s) 86, 265, 636
GluI GCNGC 3 cut(s) 86, 265, 636
GsuI CTGGAG 2 cut(s) 128, 330
HaeIII GGCC 2 cut(s) 471, 638
HgaI GACGC 1 cut(s) 473
Hin1I GRCGYC 2 cut(s) 484, 603
Hin1II CATG 4 cut(s) 29, 450, 534, 657
HinfI GANTC 7 cut(s) 22, 160, 194, 209, 244, 314, 359
HphI GGTGA 1 cut(s) 284
Hpy188I TCNGA 7 cut(s) 55, 133, 199, 214, 243, 291, 380
Hpy188III TCNNGA 1 cut(s) 562
HpyAV CCTTC 1 cut(s) 649
HpyCH4III ACNGT 2 cut(s) 404, 431
HpyCH4IV ACGT 1 cut(s) 603
HpyCH4V TGCA 2 cut(s) 504, 530
HpyF10VI GCNNNNNNNGC 1 cut(s) 536
HpyF3I CTNAG 5 cut(s) 198, 213, 228, 540, 560
HpySE526I ACGT 1 cut(s) 603
Hsp92I GRCGYC 2 cut(s) 484, 603
Hsp92II CATG 4 cut(s) 29, 450, 534, 657
Kzo9I GATC 4 cut(s) 50, 55, 67, 238
Lsp1109I GCAGC 2 cut(s) 72, 251
LweI GCATC 1 cut(s) 295
MaeII ACGT 1 cut(s) 603
MaeIII GTNAC 2 cut(s) 431, 590
MalI GATC 4 cut(s) 52, 57, 69, 240
MboI GATC 4 cut(s) 50, 55, 67, 238
MboII GAAGA 7 cut(s) 91, 117, 203, 383, 398, 401, 410
MflI RGATCY 2 cut(s) 55, 238
MluCI AATT 3 cut(s) 101, 278, 646
MlyI GAGTC 4 cut(s) 16, 154, 323, 353
MnlI CCTC 9 cut(s) 103, 139, 193, 208, 223, 229, 535, 539, 558
MspR9I CCNGG 2 cut(s) 221, 468
Mva1269I GAATGC 1 cut(s) 446
MvaI CCWGG 2 cut(s) 221, 468
MvnI CGCG 1 cut(s) 20
MwoI GCNNNNNNNGC 1 cut(s) 536
NcoI CCATGG 1 cut(s) 446
NdeII GATC 4 cut(s) 50, 55, 67, 238
NlaIII CATG 4 cut(s) 29, 450, 534, 657
NlaIV GGNNCC 3 cut(s) 42, 240, 425
NmuCI GTSAC 1 cut(s) 590
NspI RCATGY 1 cut(s) 534
PaeI GCATGC 1 cut(s) 534
PctI GAATGC 1 cut(s) 446
PfeI GAWTC 3 cut(s) 194, 209, 244
PkrI GCNGC 3 cut(s) 87, 266, 637
PleI GAGTC 4 cut(s) 16, 154, 322, 353
PpsI GAGTC 4 cut(s) 16, 154, 322, 353
PshAI GACNNNNGTC 1 cut(s) 405
Psp6I CCWGG 2 cut(s) 219, 466
PspGI CCWGG 2 cut(s) 219, 466
PspN4I GGNNCC 3 cut(s) 42, 240, 425
PspPI GGNCC 2 cut(s) 217, 424
PsuI RGATCY 2 cut(s) 55, 238
SatI GCNGC 3 cut(s) 86, 265, 636
Sau3AI GATC 4 cut(s) 50, 55, 67, 238
Sau96I GGNCC 2 cut(s) 217, 424
SchI GAGTC 4 cut(s) 16, 154, 323, 353
ScrFI CCNGG 2 cut(s) 221, 468
SetI ASST 5 cut(s) 46, 87, 289, 569, 606
SfaNI GCATC 1 cut(s) 295
SinI GGWCC 2 cut(s) 217, 424
SmlI CTYRAG 1 cut(s) 162
SmoI CTYRAG 1 cut(s) 162
SphI GCATGC 1 cut(s) 534
Sse9I AATT 3 cut(s) 101, 278, 646
SsiI CCGC 3 cut(s) 18, 88, 635
SspI AATATT 1 cut(s) 95
StyD4I CCNGG 2 cut(s) 219, 466
StyI CCWWGG 1 cut(s) 446
TaaI ACNGT 2 cut(s) 404, 431
TaiI ACGT 1 cut(s) 606
TaqI TCGA 1 cut(s) 70
TasI AATT 3 cut(s) 101, 278, 646
TauI GCSGC 1 cut(s) 638
TfiI GAWTC 3 cut(s) 194, 209, 244
TscAI CASTG 2 cut(s) 434, 599
TseFI GTSAC 1 cut(s) 590
TseI GCWGC 2 cut(s) 85, 264
Tsp45I GTSAC 1 cut(s) 590
TspDTI ATGAA 2 cut(s) 222, 308
TspGWI ACGGA 1 cut(s) 314
TspRI CASTG 2 cut(s) 434, 599
VpaK11BI GGWCC 2 cut(s) 217, 424
XceI RCATGY 1 cut(s) 534
ZraI GACGTC 1 cut(s) 604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.