Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000653

Physical Location & Seq

Genomic Coordinates Reverse (-)

37281612 .. 37282252

Gene Structure 641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002629

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGACGAAGCCGCCGAGTTTGCGGCGCAGGCGAGAAGGAGATGGAAGAAGGAAAATAGAAAGCTCCACATACCAAATCTGAACAACAGAGCCGAAGTCGCGGAGCTTAGGAAAAGGCTTCAAAGAAAGACAAGCTCTGACCTTATAATAAAAGAAGATGGAGAAGTAAAAGATTATGAATATGGCTGTGGCGTTTGTGCTAACATGGATGAGAATCACTATGATTCGGACTGCCCATGGCTAGATAAACTGCCACCAGACCAAACTATTGTTGGCCCTTACTATGACATAGTTTGCATCGGCTGTGGCCAGATTGGTGAGCTGTGCTGTTCCAAGAGAGGTTCCAAGCGAGGATATGCTGTTCTCAAGTCCTATATATTTTGTCAGGCAGCTGGTCACTGGCCTTGGGAATGCCTCACTGGCCCCAAGATTCTAGGGCTGACGGAGGAGCTCGTCGAGGAGGTCATATCCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

159

Amino Acids

17.96

Weight (kDa)

5.68

Isoelectric Point (pI)

50.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000653)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02040 FvH4_6g20312 FvH4_7g29590 FvH4_7g29800 FvH4_7g30370 FvH4_7g30400 FvH4_7g30400 FvH4_7g30400 FvH4_7g30610
rosa_chinensis	RchiOBHm_Chr1g0362141 RchiOBHm_Chr1g0378631 RchiOBHm_Chr1g0378661 RchiOBHm_Chr1g0378841 RchiOBHm_Chr2g0149561
rosa_laevigata	RLG00000002620 RLG00000002622 RLG00000002629 RLG00000003999 RLG00000013563 RLG00000020408 RLG00000020410 RLG00000020421 RLG00000026416 RLG00000026417 RLG00000027654
rosa_multiflora	Rmu_sc0006867.1_g000011 Rmu_sc0006867.1_g000015 Rmu_sc0008712.1_g000008 Rmu_sc0014005.1_g000010
rosa_roxburghii	Rroxscaffold_3G00243880 Rroxscaffold_4G00280330 Rroxscaffold_4G00280340 Rroxscaffold_4G00280410 Rroxscaffold_7G00186160
rosa_rugosa	Rorug01G0302500 Rorug01G0302600 Rorug01G0410200 Rorug01G0410300 Rorug02G0404800.1 Rorug02G0404900 Rorug02G0412300 Rorug07G0158200.1
rosa_samantha	Rh1AG304700 Rh1AG431600 Rh1AG431700 Rh1AG432200 Rh1AG432300 Rh1BG263900 Rh1BG389900 Rh1BG390100 Rh1BG390900 Rh1BG424800 Rh1CG402300 Rh1CG403200 Rh1CG403300 Rh1CG403600 Rh1DG293900 Rh1DG420100 Rh1DG421100 Rh1DG421200 Rh1DG422000 Rh1DG457600 Rh2AG463400 Rh2BG476500 Rh2BG484800 Rh2CG450200 Rh2DG485200 Rh2DG494000 Rh6CG183000 Rh6DG174400 Rh7AG294000 Rh7CG314000 Rh7DG296800 Rh7DG306300
rosa_wichuraiana	Rw1G037740 Rw1G037820 Rw2G038540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	146
AccII	CGCG	1 cut(s)	101
AciI	CCGC	3 cut(s)	12, 23, 101
AcoI	YGGCCR	1 cut(s)	307
AgsI	TTSAA	1 cut(s)	122
AloI	GAACNNNNNNTCC	2 cut(s)	345, 377
AluBI	AGCT	6 cut(s)	64, 106, 135, 322, 392, 451
AluI	AGCT	6 cut(s)	64, 106, 135, 322, 392, 451
Alw21I	GWGCWC	1 cut(s)	453
AoxI	GGCC	4 cut(s)	274, 307, 401, 421
ApeKI	GCWGC	1 cut(s)	389
AspLEI	GCGC	1 cut(s)	28
AspS9I	GGNCC	2 cut(s)	275, 422
AsuHPI	GGTGA	1 cut(s)	329
BalI	TGGCCA	1 cut(s)	309
BanII	GRGCYC	1 cut(s)	453
Bbv12I	GWGCWC	1 cut(s)	453
BbvI	GCAGC	1 cut(s)	401
BccI	CCATC	2 cut(s)	36, 152
BfaI	CTAG	2 cut(s)	242, 434
BglI	GCCNNNNNGGC	1 cut(s)	420
BisI	GCNGC	3 cut(s)	12, 24, 390
BlsI	GCNGC	3 cut(s)	13, 25, 391
BmgT120I	GGNCC	2 cut(s)	275, 422
BmiI	GGNNCC	2 cut(s)	343, 424
BmsI	GCATC	1 cut(s)	306
Bpu10I	CCTNAGC	1 cut(s)	107
BpuEI	CTTGAG	1 cut(s)	350
BsaBI	GATNNNNATC	1 cut(s)	213
BsaJI	CCNNGG	2 cut(s)	236, 404
Bse1I	ACTGG	2 cut(s)	404, 424
Bse8I	GATNNNNATC	1 cut(s)	213
BseDI	CCNNGG	2 cut(s)	236, 404
BseGI	GGATG	1 cut(s)	214
BseJI	GATNNNNATC	1 cut(s)	213
BseNI	ACTGG	2 cut(s)	404, 424
BseRI	GAGGAG	2 cut(s)	461, 473
BseXI	GCAGC	1 cut(s)	401
Bsh1236I	CGCG	1 cut(s)	101
BshFI	GGCC	4 cut(s)	276, 309, 403, 423
BsiHKAI	GWGCWC	1 cut(s)	453
BsmI	GAATGC	1 cut(s)	416
BsnI	GGCC	4 cut(s)	276, 309, 403, 423
Bsp1286I	GDGCHC	1 cut(s)	453
Bsp19I	CCATGG	1 cut(s)	236
BspACI	CCGC	3 cut(s)	12, 23, 101
BspANI	GGCC	4 cut(s)	276, 309, 403, 423
BspFNI	CGCG	1 cut(s)	101
BspLI	GGNNCC	2 cut(s)	343, 424
BsrI	ACTGG	2 cut(s)	404, 424
BssECI	CCNNGG	2 cut(s)	236, 404
BssT1I	CCWWGG	2 cut(s)	236, 404
BstC8I	GCNNGC	1 cut(s)	30
BstDEI	CTNAG	1 cut(s)	107
BstDSI	CCRYGG	1 cut(s)	236
BstF5I	GGATG	1 cut(s)	214
BstFNI	CGCG	1 cut(s)	101
BstHHI	GCGC	1 cut(s)	28
BstMWI	GCNNNNNNNGC	4 cut(s)	20, 29, 98, 420
BstUI	CGCG	1 cut(s)	101
BstV1I	GCAGC	1 cut(s)	401
BsuRI	GGCC	4 cut(s)	276, 309, 403, 423
BtgI	CCRYGG	1 cut(s)	236
BtsCI	GGATG	1 cut(s)	214
BtsIMutI	CAGTG	2 cut(s)	397, 417
Cac8I	GCNNGC	1 cut(s)	30
CfoI	GCGC	1 cut(s)	28
Cfr13I	GGNCC	2 cut(s)	275, 422
CviAII	CATG	2 cut(s)	205, 237
DdeI	CTNAG	1 cut(s)	107
EaeI	YGGCCR	1 cut(s)	307
Ecl136II	GAGCTC	1 cut(s)	451
Eco130I	CCWWGG	2 cut(s)	236, 404
Eco24I	GRGCYC	1 cut(s)	453
Eco53kI	GAGCTC	1 cut(s)	451
EcoICRI	GAGCTC	1 cut(s)	451
EcoT14I	CCWWGG	2 cut(s)	236, 404
EcoT38I	GRGCYC	1 cut(s)	453
ErhI	CCWWGG	2 cut(s)	236, 404
FaeI	CATG	2 cut(s)	208, 240
FatI	CATG	2 cut(s)	204, 236
Fnu4HI	GCNGC	3 cut(s)	12, 24, 390
FokI	GGATG	1 cut(s)	221
FriOI	GRGCYC	1 cut(s)	453
Fsp4HI	GCNGC	3 cut(s)	12, 24, 390
FspBI	CTAG	2 cut(s)	242, 434
GlaI	GCGC	1 cut(s)	27
GluI	GCNGC	3 cut(s)	12, 24, 390
HaeIII	GGCC	4 cut(s)	276, 309, 403, 423
HhaI	GCGC	1 cut(s)	28
Hin1II	CATG	2 cut(s)	208, 240
Hin6I	GCGC	1 cut(s)	26
HinP1I	GCGC	1 cut(s)	26
HinfI	GANTC	3 cut(s)	214, 224, 430
HphI	GGTGA	1 cut(s)	329
Hpy188I	TCNGA	3 cut(s)	81, 139, 229
Hpy188III	TCNNGA	1 cut(s)	474
Hpy99I	CGWCG	1 cut(s)	458
HpyAV	CCTTC	2 cut(s)	30, 43
HpyCH4V	TGCA	1 cut(s)	297
HpyF10VI	GCNNNNNNNGC	4 cut(s)	20, 29, 98, 420
HpyF3I	CTNAG	1 cut(s)	107
Hsp92II	CATG	2 cut(s)	208, 240
HspAI	GCGC	1 cut(s)	26
LmnI	GCTCC	3 cut(s)	69, 103, 448
LpnPI	CCDG	7 cut(s)	14, 270, 323, 371, 378, 385, 405
Lsp1109I	GCAGC	1 cut(s)	401
LweI	GCATC	1 cut(s)	306
MaeI	CTAG	2 cut(s)	242, 434
MaeIII	GTNAC	1 cut(s)	395
MboII	GAAGA	2 cut(s)	58, 167
MhlI	GDGCHC	1 cut(s)	453
MlsI	TGGCCA	1 cut(s)	309
MluNI	TGGCCA	1 cut(s)	309
MnlI	CCTC	6 cut(s)	332, 344, 425, 439, 451, 454
Mox20I	TGGCCA	1 cut(s)	309
MscI	TGGCCA	1 cut(s)	309
Msp20I	TGGCCA	1 cut(s)	309
MspA1I	CMGCKG	1 cut(s)	392
Mva1269I	GAATGC	1 cut(s)	416
MvnI	CGCG	1 cut(s)	101
MwoI	GCNNNNNNNGC	4 cut(s)	20, 29, 98, 420
NcoI	CCATGG	1 cut(s)	236
NlaIII	CATG	2 cut(s)	208, 240
NlaIV	GGNNCC	2 cut(s)	343, 424
NmeAIII	GCCGAG	1 cut(s)	40
NmuCI	GTSAC	1 cut(s)	395
PcsI	WCGNNNNNNNCGW	1 cut(s)	12
PctI	GAATGC	1 cut(s)	416
PfeI	GAWTC	3 cut(s)	214, 224, 430
PkrI	GCNGC	3 cut(s)	13, 25, 391
PsiI	TTATAA	1 cut(s)	146
Psp124BI	GAGCTC	1 cut(s)	453
PspN4I	GGNNCC	2 cut(s)	343, 424
PspPI	GGNCC	2 cut(s)	275, 422
PvuII	CAGCTG	1 cut(s)	392
SacI	GAGCTC	1 cut(s)	453
SatI	GCNGC	3 cut(s)	12, 24, 390
Sau96I	GGNCC	2 cut(s)	275, 422
SduI	GDGCHC	1 cut(s)	453
SetI	ASST	9 cut(s)	66, 108, 137, 144, 324, 343, 394, 453, 465
SfaNI	GCATC	1 cut(s)	306
SmlI	CTYRAG	1 cut(s)	365
SmoI	CTYRAG	1 cut(s)	365
SsiI	CCGC	3 cut(s)	12, 23, 101
SspMI	CTAG	2 cut(s)	242, 434
SstI	GAGCTC	1 cut(s)	453
StyI	CCWWGG	2 cut(s)	236, 404
TaqI	TCGA	1 cut(s)	456
TauI	GCSGC	2 cut(s)	14, 26
TfiI	GAWTC	3 cut(s)	214, 224, 430
TscAI	CASTG	2 cut(s)	404, 424
TseFI	GTSAC	1 cut(s)	395
TseI	GCWGC	1 cut(s)	389
Tsp45I	GTSAC	1 cut(s)	395
TspDTI	ATGAA	1 cut(s)	192
TspGWI	ACGGA	1 cut(s)	458
TspRI	CASTG	2 cut(s)	404, 424
XcmI	CCANNNNNNNNNTGG	1 cut(s)	269
XspI	CTAG	2 cut(s)	242, 434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.