Rh1AG432200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000653
Physical Location & Seq
Reverse (-)
65819214 .. 65819633
420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG432200.1

Sequence Viewer

Length: 420 bp
ATGATGCTGGAGTGTCTTATGTCCGTGTGGGCGACTGTGTATGTGAAAGACTCGGAAAAGGAAGAAAACAGTGAAGATGGATATAGTGAAGAAGAAGGAGAAGGTTGTCCCATTTGTTTCGACCTGGATCACAATAACAATAACTGCCCATGGCTAGTTAATGTTCCACCAGGTAAAACAGTTGGGCGTCTCTATGACGTCATAGAATGCAAGGGTTGTGGTAAGTTGGGACCTGCATGCTGTTCTGAGGGAGGACGTGCTGTTCTCAGGAGGTGTGGTCATTGTTATGATTTTGGTCACTGGGGGGACGTCTGCCTGAACTATAAGTATATCGCCCCTTTCGGCCTTCCCAGATTATCCATGAGAAATCCGCTATCCCCTTTCTCTTTCTGCAAGAAATCAAATGCGTCCTCAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

15.47

Weight (kDa)

5.6

Isoelectric Point (pI)

65.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 201, 312
Acc36I ACCTGC 1 cut(s) 241
AciI CCGC 1 cut(s) 371
AclWI GGATC 1 cut(s) 135
AcyI GRCGYC 3 cut(s) 187, 198, 309
AjiI CACGTC 1 cut(s) 257
AjnI CCWGG 2 cut(s) 123, 169
AloI GAACNNNNNNTCC 2 cut(s) 246, 278
Alw26I GTCTC 1 cut(s) 194
AlwI GGATC 1 cut(s) 135
AoxI GGCC 1 cut(s) 343
AspS9I GGNCC 1 cut(s) 230
AvaII GGWCC 1 cut(s) 230
BccI CCATC 1 cut(s) 71
BciT130I CCWGG 2 cut(s) 125, 171
BcoDI GTCTC 1 cut(s) 194
BfaI CTAG 1 cut(s) 155
BfuAI ACCTGC 1 cut(s) 241
Bme1390I CCNGG 2 cut(s) 125, 171
Bme18I GGWCC 1 cut(s) 230
BmgBI CACGTC 1 cut(s) 257
BmgT120I GGNCC 1 cut(s) 230
BmiI GGNNCC 1 cut(s) 231
BmrFI CCNGG 2 cut(s) 125, 171
BmrI ACTGGG 1 cut(s) 310
BmuI ACTGGG 1 cut(s) 310
BpmI CTGGAG 1 cut(s) 29
BsaHI GRCGYC 3 cut(s) 187, 198, 309
BsaJI CCNNGG 1 cut(s) 149
BsaXI ACNNNNNCTCC 2 cut(s) 262, 292
Bse1I ACTGG 1 cut(s) 305
BseBI CCWGG 2 cut(s) 125, 171
BseDI CCNNGG 1 cut(s) 149
BseMII CTCAG 2 cut(s) 237, 280
BseNI ACTGG 1 cut(s) 305
BshFI GGCC 1 cut(s) 345
BslFI GGGAC 3 cut(s) 93, 243, 320
BsmAI GTCTC 1 cut(s) 194
BsmBI CGTCTC 1 cut(s) 194
BsmFI GGGAC 3 cut(s) 93, 243, 320
BsmI GAATGC 1 cut(s) 212
BsnI GGCC 1 cut(s) 345
Bsp143I GATC 1 cut(s) 127
Bsp19I CCATGG 1 cut(s) 149
BspACI CCGC 1 cut(s) 371
BspANI GGCC 1 cut(s) 345
BspCNI CTCAG 2 cut(s) 238, 279
BspLI GGNNCC 1 cut(s) 231
BspMI ACCTGC 1 cut(s) 241
BspPI GGATC 1 cut(s) 135
BsrI ACTGG 1 cut(s) 305
BssECI CCNNGG 1 cut(s) 149
BssMI GATC 1 cut(s) 127
BssNI GRCGYC 3 cut(s) 187, 198, 309
BssT1I CCWWGG 1 cut(s) 149
Bst2UI CCWGG 2 cut(s) 125, 171
Bst4CI ACNGT 3 cut(s) 37, 71, 181
BstACI GRCGYC 3 cut(s) 187, 198, 309
BstC8I GCNNGC 1 cut(s) 238
BstDEI CTNAG 2 cut(s) 246, 266
BstDSI CCRYGG 1 cut(s) 149
BstKTI GATC 1 cut(s) 130
BstMAI GTCTC 1 cut(s) 194
BstMBI GATC 1 cut(s) 127
BstNI CCWGG 2 cut(s) 125, 171
BstNSI RCATGY 1 cut(s) 240
BstSCI CCNGG 2 cut(s) 123, 169
BsuRI GGCC 1 cut(s) 345
BtgI CCRYGG 1 cut(s) 149
BtrI CACGTC 1 cut(s) 257
BtsIMutI CAGTG 2 cut(s) 76, 298
BveI ACCTGC 1 cut(s) 241
Cac8I GCNNGC 1 cut(s) 238
Cfr13I GGNCC 1 cut(s) 230
CseI GACGC 2 cut(s) 176, 396
CsiI ACCWGGT 1 cut(s) 169
CspCI CAANNNNNGTGG 2 cut(s) 199, 234
CviAII CATG 3 cut(s) 150, 237, 361
CviJI RGCY 2 cut(s) 154, 345
CviKI_1 RGCY 2 cut(s) 154, 345
DdeI CTNAG 2 cut(s) 246, 266
DpnI GATC 1 cut(s) 129
DpnII GATC 1 cut(s) 127
Eco130I CCWWGG 1 cut(s) 149
Eco47I GGWCC 1 cut(s) 230
EcoO109I RGGNCCY 1 cut(s) 230
EcoRII CCWGG 2 cut(s) 123, 169
EcoT14I CCWWGG 1 cut(s) 149
ErhI CCWWGG 1 cut(s) 149
Esp3I CGTCTC 1 cut(s) 194
FaeI CATG 3 cut(s) 153, 240, 364
FaqI GGGAC 3 cut(s) 93, 243, 320
FatI CATG 3 cut(s) 149, 236, 360
FspBI CTAG 1 cut(s) 155
GsuI CTGGAG 1 cut(s) 29
HaeIII GGCC 1 cut(s) 345
HgaI GACGC 2 cut(s) 176, 396
Hin1I GRCGYC 3 cut(s) 187, 198, 309
Hin1II CATG 3 cut(s) 153, 240, 364
HinfI GANTC 1 cut(s) 50
Hpy188I TCNGA 2 cut(s) 55, 247
Hpy188III TCNNGA 1 cut(s) 268
HpyAV CCTTC 3 cut(s) 89, 95, 356
HpyCH4III ACNGT 3 cut(s) 37, 71, 181
HpyCH4IV ACGT 3 cut(s) 198, 256, 309
HpyCH4V TGCA 3 cut(s) 210, 236, 393
HpyF3I CTNAG 2 cut(s) 246, 266
HpySE526I ACGT 3 cut(s) 198, 256, 309
Hsp92I GRCGYC 3 cut(s) 187, 198, 309
Hsp92II CATG 3 cut(s) 153, 240, 364
Kzo9I GATC 1 cut(s) 127
LpnPI CCDG 9 cut(s) 110, 137, 156, 183, 246, 253, 286, 329, 364
MabI ACCWGGT 1 cut(s) 169
MaeI CTAG 1 cut(s) 155
MaeII ACGT 3 cut(s) 198, 256, 309
MaeIII GTNAC 1 cut(s) 296
MalI GATC 1 cut(s) 129
MboI GATC 1 cut(s) 127
MboII GAAGA 4 cut(s) 74, 86, 101, 104
MlyI GAGTC 1 cut(s) 44
MnlI CCTC 3 cut(s) 241, 245, 264
MseI TTAA 1 cut(s) 159
MslI CAYNNNNRTG 1 cut(s) 285
MspR9I CCNGG 2 cut(s) 125, 171
Mva1269I GAATGC 1 cut(s) 212
MvaI CCWGG 2 cut(s) 125, 171
NcoI CCATGG 1 cut(s) 149
NdeII GATC 1 cut(s) 127
NlaIII CATG 3 cut(s) 153, 240, 364
NlaIV GGNNCC 1 cut(s) 231
NmuCI GTSAC 1 cut(s) 296
NspI RCATGY 1 cut(s) 240
PaeI GCATGC 1 cut(s) 240
PctI GAATGC 1 cut(s) 212
PleI GAGTC 1 cut(s) 44
PpsI GAGTC 1 cut(s) 44
PpuMI RGGWCCY 1 cut(s) 230
Psp5II RGGWCCY 1 cut(s) 230
Psp6I CCWGG 2 cut(s) 123, 169
PspGI CCWGG 2 cut(s) 123, 169
PspN4I GGNNCC 1 cut(s) 231
PspPI GGNCC 1 cut(s) 230
PspPPI RGGWCCY 1 cut(s) 230
RseI CAYNNNNRTG 1 cut(s) 285
SaqAI TTAA 1 cut(s) 159
Sau3AI GATC 1 cut(s) 127
Sau96I GGNCC 1 cut(s) 230
SchI GAGTC 1 cut(s) 44
ScrFI CCNGG 2 cut(s) 125, 171
SetI ASST 8 cut(s) 106, 126, 175, 201, 235, 259, 275, 312
SexAI ACCWGGT 1 cut(s) 169
SinI GGWCC 1 cut(s) 230
SmiMI CAYNNNNRTG 1 cut(s) 285
SphI GCATGC 1 cut(s) 240
SsiI CCGC 1 cut(s) 371
SspMI CTAG 1 cut(s) 155
StyD4I CCNGG 2 cut(s) 123, 169
StyI CCWWGG 1 cut(s) 149
TaaI ACNGT 3 cut(s) 37, 71, 181
TaiI ACGT 3 cut(s) 201, 259, 312
TaqI TCGA 1 cut(s) 120
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TscAI CASTG 2 cut(s) 76, 305
TseFI GTSAC 1 cut(s) 296
Tsp45I GTSAC 1 cut(s) 296
TspGWI ACGGA 1 cut(s) 13
TspRI CASTG 2 cut(s) 76, 305
VpaK11BI GGWCC 1 cut(s) 230
XceI RCATGY 1 cut(s) 240
XspI CTAG 1 cut(s) 155
ZraI GACGTC 2 cut(s) 199, 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.