Rw2G038540

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000653
Physical Location & Seq
Forward (+)
63455510 .. 63457833
2324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G038540.1

Sequence Viewer

Length: 621 bp
ATGGCTCCGACAAGGAGGAAGAGGACCAAGCAGAGGGCTGGTTTTACCAGCATCAAGATCAACAAGGAGGAACAAAAACAAGTTGAGGCCTCGGAGCGTGAGATTGCGGATCTGAATCTGGGCGACAAGAGCAAGACTCATGGTAGCAAGGGGCAAGAATCAGAGGGTTCTGGAGACATTAAAGGTGATGACTATTTGGGCGAGGATGTGTCAGGTAGCAAGGGGAAAGAATCAAAGGATCATCTAAGAACTGCCCGTGATGACTTTTTGGGCATAGATATTCCAGTGTCATGTAGAAGGAAATTAGCGGGTTGTGCCTGTTGTGGCGAGTATGATCACCTTAATGTAACCTGCCCATTCCTAAAATATATTCCTGATGGCGCTAAAATTGGCCGTTGCTTTGAGACAATGGGGAAGTCTGTGGGAGGATATGCTATGCTGAAGAGGTGTTGTTATTGTTTATGTATTGGTCACTGGGAGTGGGAGGACTGTGAAGATTGTCCTAGACCAAAGGACGTCGTCTATGAGAAACTTGAATACTTAGATGGGGATGGGATTTCCTCAGAGTCTGAGGATGAGGATGCATTTCGACCCCGTAATAGAGCTCCATGGGGACTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

206

Amino Acids

23.06

Weight (kDa)

5.7

Isoelectric Point (pI)

41.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 519
Acc36I ACCTGC 1 cut(s) 359
AciI CCGC 2 cut(s) 107, 308
AclWI GGATC 2 cut(s) 117, 246
AcoI YGGCCR 1 cut(s) 391
AcuI CTGAAG 1 cut(s) 461
AcyI GRCGYC 1 cut(s) 516
AfiI CCNNNNNNNGG 1 cut(s) 33
AgsI TTSAA 1 cut(s) 536
AluBI AGCT 1 cut(s) 605
AluI AGCT 1 cut(s) 605
Alw21I GWGCWC 1 cut(s) 607
Alw26I GTCTC 2 cut(s) 168, 398
AlwI GGATC 2 cut(s) 117, 246
AlwNI CAGNNNCTG 1 cut(s) 569
AoxI GGCC 2 cut(s) 87, 391
AspLEI GCGC 1 cut(s) 383
AspS9I GGNCC 1 cut(s) 24
AsuHPI GGTGA 2 cut(s) 197, 329
AvaII GGWCC 1 cut(s) 24
BanII GRGCYC 1 cut(s) 607
Bbv12I GWGCWC 1 cut(s) 607
BccI CCATC 3 cut(s) 371, 539, 545
BceAI ACGGC 1 cut(s) 378
BclI TGATCA 1 cut(s) 334
BcoDI GTCTC 2 cut(s) 168, 398
BfaI CTAG 1 cut(s) 504
BfoI RGCGCY 1 cut(s) 384
BfuAI ACCTGC 1 cut(s) 359
Bme18I GGWCC 1 cut(s) 24
BmgT120I GGNCC 1 cut(s) 24
BmiI GGNNCC 1 cut(s) 6
BmrI ACTGGG 1 cut(s) 484
BmsI GCATC 2 cut(s) 60, 571
BmuI ACTGGG 1 cut(s) 484
BplI GAGNNNNNCTC 2 cut(s) 121, 153
BpmI CTGGAG 1 cut(s) 192
BsaBI GATNNNNATC 1 cut(s) 114
BsaHI GRCGYC 1 cut(s) 516
BsaJI CCNNGG 2 cut(s) 90, 608
Bsc4I CCNNNNNNNGG 1 cut(s) 33
Bse1I ACTGG 2 cut(s) 284, 479
Bse8I GATNNNNATC 1 cut(s) 114
BseDI CCNNGG 2 cut(s) 90, 608
BseGI GGATG 4 cut(s) 211, 556, 580, 586
BseJI GATNNNNATC 1 cut(s) 114
BseLI CCNNNNNNNGG 1 cut(s) 33
BseMII CTCAG 2 cut(s) 561, 576
BseNI ACTGG 2 cut(s) 284, 479
BshFI GGCC 2 cut(s) 89, 393
BsiHKAI GWGCWC 1 cut(s) 607
BslI CCNNNNNNNGG 1 cut(s) 33
BsmAI GTCTC 2 cut(s) 168, 398
BsnI GGCC 2 cut(s) 89, 393
Bsp1286I GDGCHC 1 cut(s) 607
Bsp143I GATC 4 cut(s) 57, 109, 238, 334
Bsp19I CCATGG 1 cut(s) 608
BspACI CCGC 2 cut(s) 107, 308
BspANI GGCC 2 cut(s) 89, 393
BspCNI CTCAG 2 cut(s) 562, 575
BspLI GGNNCC 1 cut(s) 6
BspMI ACCTGC 1 cut(s) 359
BspPI GGATC 2 cut(s) 117, 246
BsrI ACTGG 2 cut(s) 284, 479
BssECI CCNNGG 2 cut(s) 90, 608
BssMI GATC 4 cut(s) 57, 109, 238, 334
BssNI GRCGYC 1 cut(s) 516
BssT1I CCWWGG 1 cut(s) 608
Bst4CI ACNGT 1 cut(s) 491
Bst6I CTCTTC 2 cut(s) 14, 437
BstACI GRCGYC 1 cut(s) 516
BstDEI CTNAG 4 cut(s) 245, 541, 562, 570
BstDSI CCRYGG 1 cut(s) 608
BstF5I GGATG 4 cut(s) 211, 556, 580, 586
BstH2I RGCGCY 1 cut(s) 384
BstHHI GCGC 1 cut(s) 383
BstKTI GATC 4 cut(s) 60, 112, 241, 337
BstMAI GTCTC 2 cut(s) 168, 398
BstMBI GATC 4 cut(s) 57, 109, 238, 334
BstMWI GCNNNNNNNGC 2 cut(s) 129, 314
BstX2I RGATCY 1 cut(s) 109
BstYI RGATCY 1 cut(s) 109
BsuRI GGCC 2 cut(s) 89, 393
BtgI CCRYGG 1 cut(s) 608
BtsCI GGATG 4 cut(s) 211, 556, 580, 586
BtsIMutI CAGTG 2 cut(s) 291, 472
BveI ACCTGC 1 cut(s) 359
CaiI CAGNNNCTG 1 cut(s) 569
CfoI GCGC 1 cut(s) 383
Cfr13I GGNCC 1 cut(s) 24
CviAII CATG 3 cut(s) 140, 291, 609
CviJI RGCY 5 cut(s) 5, 38, 89, 393, 605
CviKI_1 RGCY 5 cut(s) 5, 38, 89, 393, 605
DdeI CTNAG 4 cut(s) 245, 541, 562, 570
DpnI GATC 4 cut(s) 59, 111, 240, 336
DpnII GATC 4 cut(s) 57, 109, 238, 334
EaeI YGGCCR 1 cut(s) 391
Eam1104I CTCTTC 2 cut(s) 14, 437
EarI CTCTTC 2 cut(s) 14, 437
Ecl136II GAGCTC 1 cut(s) 605
Eco130I CCWWGG 1 cut(s) 608
Eco147I AGGCCT 1 cut(s) 89
Eco24I GRGCYC 1 cut(s) 607
Eco47I GGWCC 1 cut(s) 24
Eco53kI GAGCTC 1 cut(s) 605
Eco57I CTGAAG 1 cut(s) 461
EcoICRI GAGCTC 1 cut(s) 605
EcoT14I CCWWGG 1 cut(s) 608
EcoT22I ATGCAT 1 cut(s) 586
EcoT38I GRGCYC 1 cut(s) 607
ErhI CCWWGG 1 cut(s) 608
FaeI CATG 3 cut(s) 143, 294, 612
FatI CATG 3 cut(s) 139, 290, 608
FauI CCCGC 1 cut(s) 301
FbaI TGATCA 1 cut(s) 334
FokI GGATG 4 cut(s) 218, 563, 587, 593
FriOI GRGCYC 1 cut(s) 607
FspBI CTAG 1 cut(s) 504
GlaI GCGC 1 cut(s) 382
GsuI CTGGAG 1 cut(s) 192
HaeII RGCGCY 1 cut(s) 384
HaeIII GGCC 2 cut(s) 89, 393
HhaI GCGC 1 cut(s) 383
Hin1I GRCGYC 1 cut(s) 516
Hin1II CATG 3 cut(s) 143, 294, 612
Hin6I GCGC 1 cut(s) 381
HinP1I GCGC 1 cut(s) 381
HinfI GANTC 5 cut(s) 115, 136, 158, 230, 566
HphI GGTGA 2 cut(s) 197, 329
Hpy188I TCNGA 6 cut(s) 9, 94, 114, 163, 565, 571
Hpy188III TCNNGA 3 cut(s) 55, 171, 374
Hpy99I CGWCG 1 cut(s) 521
HpyAV CCTTC 1 cut(s) 291
HpyCH4III ACNGT 1 cut(s) 491
HpyCH4IV ACGT 1 cut(s) 516
HpyCH4V TGCA 1 cut(s) 584
HpyF10VI GCNNNNNNNGC 2 cut(s) 129, 314
HpyF3I CTNAG 4 cut(s) 245, 541, 562, 570
HpySE526I ACGT 1 cut(s) 516
Hsp92I GRCGYC 1 cut(s) 516
Hsp92II CATG 3 cut(s) 143, 294, 612
HspAI GCGC 1 cut(s) 381
Ksp22I TGATCA 1 cut(s) 334
Kzo9I GATC 4 cut(s) 57, 109, 238, 334
LmnI GCTCC 3 cut(s) 10, 94, 610
LweI GCATC 2 cut(s) 60, 571
MaeI CTAG 1 cut(s) 504
MaeII ACGT 1 cut(s) 516
MaeIII GTNAC 2 cut(s) 346, 470
MalI GATC 4 cut(s) 59, 111, 240, 336
MboI GATC 4 cut(s) 57, 109, 238, 334
MboII GAAGA 3 cut(s) 31, 454, 506
MflI RGATCY 1 cut(s) 109
MhlI GDGCHC 1 cut(s) 607
MluCI AATT 2 cut(s) 302, 387
MlyI GAGTC 2 cut(s) 130, 575
MmeI TCCRAC 1 cut(s) 32
Mph1103I ATGCAT 1 cut(s) 586
MseI TTAA 2 cut(s) 180, 342
MslI CAYNNNNRTG 1 cut(s) 342
MwoI GCNNNNNNNGC 2 cut(s) 129, 314
NcoI CCATGG 1 cut(s) 608
NdeII GATC 4 cut(s) 57, 109, 238, 334
NlaIII CATG 3 cut(s) 143, 294, 612
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 470
NsiI ATGCAT 1 cut(s) 586
PceI AGGCCT 1 cut(s) 89
PfeI GAWTC 3 cut(s) 115, 158, 230
PflFI GACNNNGTC 1 cut(s) 518
PleI GAGTC 2 cut(s) 130, 574
PpsI GAGTC 2 cut(s) 130, 574
Psp124BI GAGCTC 1 cut(s) 607
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 24
PstNI CAGNNNCTG 1 cut(s) 569
PsuI RGATCY 1 cut(s) 109
PsyI GACNNNGTC 1 cut(s) 518
RseI CAYNNNNRTG 1 cut(s) 342
SacI GAGCTC 1 cut(s) 607
SaqAI TTAA 2 cut(s) 180, 342
Sau3AI GATC 4 cut(s) 57, 109, 238, 334
Sau96I GGNCC 1 cut(s) 24
SchI GAGTC 2 cut(s) 130, 575
SduI GDGCHC 1 cut(s) 607
SetI ASST 7 cut(s) 187, 217, 342, 353, 449, 519, 607
SfaNI GCATC 2 cut(s) 60, 571
SinI GGWCC 1 cut(s) 24
SmiMI CAYNNNNRTG 1 cut(s) 342
Sse9I AATT 2 cut(s) 302, 387
SseBI AGGCCT 1 cut(s) 89
SsiI CCGC 2 cut(s) 107, 308
SspMI CTAG 1 cut(s) 504
SstI GAGCTC 1 cut(s) 607
StuI AGGCCT 1 cut(s) 89
StyI CCWWGG 1 cut(s) 608
TaaI ACNGT 1 cut(s) 491
TaiI ACGT 1 cut(s) 519
TaqI TCGA 1 cut(s) 589
TasI AATT 2 cut(s) 302, 387
TfiI GAWTC 3 cut(s) 115, 158, 230
Tru1I TTAA 2 cut(s) 180, 342
Tru9I TTAA 2 cut(s) 180, 342
TscAI CASTG 2 cut(s) 291, 479
TseFI GTSAC 1 cut(s) 470
Tsp45I GTSAC 1 cut(s) 470
TspRI CASTG 2 cut(s) 291, 479
Tth111I GACNNNGTC 1 cut(s) 518
VpaK11BI GGWCC 1 cut(s) 24
XspI CTAG 1 cut(s) 504
ZraI GACGTC 1 cut(s) 517
Zsp2I ATGCAT 1 cut(s) 586
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.