Rh1AG432300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000653
Physical Location & Seq
Reverse (-)
65842830 .. 65848557
5728 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG432300.1

Sequence Viewer

Length: 984 bp
ATGGAATGCGAAACCTCGATGCCGGAAATTATCAAGGAAGCCAAGGAGGCGGATCTTCATGGATCACTAGCTGCGAAAATCCATACTGTTTTTGACAGATCAAGGTGGGAAGAACCTCAAAAGAGATCAATGACTATTGGTCTGGGAAAATCTGAAATGTATAGGGATTTGCTGCACTCTTTGCAAGAGGTTGGGTGCCAGATGAGGCTGCTGGGCATTAGCAGTGTTCCTGAAGCCAACAAGAACAGGACTCATGCAGGTAGCAAGGGGGAAGAATTAAAGGGTACTGGTTATACTTTGGCCCAAATTCTGATAGACATCGTACGTTTCGCATCAAAAGTGGGTTTTCATATTGATTTGGATTCCATCGATTCCCGTGATCGGAAGATGCTGAAAGATGAGACCAAGGCTGGTGTTATGGAATGGGAACCTATGGGATCGGATCTCTTGAATGATCAAGTTGAGAAGAAGCAGCCGGGAATGATCAAATGGGTGGATCTGGGGGACAGCACTGAAGAATCGGAGGACGAAGAATCTGAGGACCAGGAAACCAAGGATGAGGATCTGAATCTGGCTGTTGAGAACTGCTCTGATGGTGAACAATTTTTAAAACTTTGTCAGATCAAAACAAATGATGCTGGAGTGTCTTATGTCCGTATGGGCGACTATGTGTATGTGAAAAAGGAAGAAAACAGTGAAGATGGATATAGTGAAGAAGAAGGAGAAGGTTGTCCCGTTTGTTTTGACCTGGATCACAATAACAATAACTGCCCATGGCTAGTTAATGTTCCACCAGGTAAAACAGTTGGGCGTCTCTATGACATACAATGCAAGGGTTGTGATAAGCTGGGACTTGCATGCTGTTCTAAGGGAGTACGTGCTGTTCTCAGGAGGTGTGGTCGTTGTTTTGATTTTGGTCACTGGGGGGACGACTGCCCCAGCTATAAGTATATGCCCCTTTCGGCCTTCCCAAATTATCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

327

Amino Acids

36.78

Weight (kDa)

4.8

Isoelectric Point (pI)

49.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 248
AccB1I GGYRCC 1 cut(s) 195
AciI CCGC 1 cut(s) 50
AclWI GGATC 7 cut(s) 60, 70, 445, 450, 504, 570, 759
AcsI RAATTY 1 cut(s) 306
AcuI CTGAAG 2 cut(s) 252, 534
AcyI GRCGYC 1 cut(s) 811
AfaI GTAC 3 cut(s) 286, 324, 876
AfiI CCNNNNNNNGG 1 cut(s) 381
AgsI TTSAA 1 cut(s) 451
AhdI GACNNNNNGTC 1 cut(s) 138
AjnI CCWGG 3 cut(s) 543, 747, 793
AluBI AGCT 3 cut(s) 71, 847, 942
AluI AGCT 3 cut(s) 71, 847, 942
Alw26I GTCTC 2 cut(s) 395, 818
AlwI GGATC 7 cut(s) 60, 70, 445, 450, 504, 570, 759
AoxI GGCC 2 cut(s) 300, 963
ApeKI GCWGC 4 cut(s) 71, 172, 208, 472
ApoI RAATTY 1 cut(s) 306
AspS9I GGNCC 2 cut(s) 301, 541
AsuC2I CCSGG 1 cut(s) 477
AsuHPI GGTGA 1 cut(s) 608
AvaII GGWCC 1 cut(s) 541
BanI GGYRCC 1 cut(s) 195
BbvI GCAGC 4 cut(s) 58, 159, 195, 484
BccI CCATC 3 cut(s) 374, 587, 695
BciT130I CCWGG 3 cut(s) 545, 749, 795
BclI TGATCA 2 cut(s) 454, 483
BcnI CCSGG 1 cut(s) 477
BcoDI GTCTC 2 cut(s) 395, 818
BfaI CTAG 2 cut(s) 68, 779
BfuAI ACCTGC 1 cut(s) 248
BglI GCCNNNNNGGC 1 cut(s) 47
BisI GCNGC 4 cut(s) 72, 173, 209, 473
BlsI GCNGC 4 cut(s) 73, 174, 210, 474
Bme1390I CCNGG 4 cut(s) 477, 545, 749, 795
Bme18I GGWCC 1 cut(s) 541
BmeRI GACNNNNNGTC 1 cut(s) 138
BmgT120I GGNCC 2 cut(s) 301, 541
BmiI GGNNCC 2 cut(s) 197, 429
BmrFI CCNGG 4 cut(s) 477, 545, 749, 795
BmrI ACTGGG 1 cut(s) 931
BmsI GCATC 4 cut(s) 9, 341, 378, 625
BmuI ACTGGG 1 cut(s) 931
BplI GAGNNNNNCTC 2 cut(s) 572, 604
BpmI CTGGAG 1 cut(s) 660
BpuMI CCSGG 1 cut(s) 477
Bsa29I ATCGAT 1 cut(s) 369
BsaAI YACGTR 1 cut(s) 878
BsaBI GATNNNNATC 3 cut(s) 317, 561, 567
BsaHI GRCGYC 1 cut(s) 811
BsaI GGTCTC 1 cut(s) 395
BsaJI CCNNGG 4 cut(s) 42, 405, 552, 773
BsaXI ACNNNNNCTCC 2 cut(s) 883, 913
Bsc4I CCNNNNNNNGG 1 cut(s) 381
Bse1I ACTGG 2 cut(s) 292, 926
Bse8I GATNNNNATC 3 cut(s) 317, 561, 567
BseBI CCWGG 3 cut(s) 545, 749, 795
BseCI ATCGAT 1 cut(s) 369
BseDI CCNNGG 4 cut(s) 42, 405, 552, 773
BseGI GGATG 1 cut(s) 562
BseJI GATNNNNATC 3 cut(s) 317, 561, 567
BseLI CCNNNNNNNGG 1 cut(s) 381
BseMII CTCAG 2 cut(s) 528, 901
BseNI ACTGG 2 cut(s) 292, 926
BseXI GCAGC 4 cut(s) 58, 159, 195, 484
BseYI CCCAGC 3 cut(s) 211, 847, 938
BsgI GTGCAG 1 cut(s) 158
BshFI GGCC 2 cut(s) 302, 965
BshNI GGYRCC 1 cut(s) 195
BshVI ATCGAT 1 cut(s) 369
BsiSI CCGG 2 cut(s) 23, 476
BsiWI CGTACG 1 cut(s) 322
BslFI GGGAC 4 cut(s) 518, 717, 864, 941
BslI CCNNNNNNNGG 1 cut(s) 381
BsmAI GTCTC 2 cut(s) 395, 818
BsmBI CGTCTC 1 cut(s) 818
BsmFI GGGAC 4 cut(s) 518, 717, 864, 941
BsmI GAATGC 1 cut(s) 11
BsnI GGCC 2 cut(s) 302, 965
Bso31I GGTCTC 1 cut(s) 395
Bsp19I CCATGG 1 cut(s) 773
BspACI CCGC 1 cut(s) 50
BspANI GGCC 2 cut(s) 302, 965
BspCNI CTCAG 2 cut(s) 529, 900
BspDI ATCGAT 1 cut(s) 369
BspLI GGNNCC 2 cut(s) 197, 429
BspMI ACCTGC 1 cut(s) 248
BspPI GGATC 7 cut(s) 60, 70, 445, 450, 504, 570, 759
BspT107I GGYRCC 1 cut(s) 195
BspTNI GGTCTC 1 cut(s) 395
BsrI ACTGG 2 cut(s) 292, 926
BssECI CCNNGG 4 cut(s) 42, 405, 552, 773
BssNI GRCGYC 1 cut(s) 811
BssT1I CCWWGG 4 cut(s) 42, 405, 552, 773
Bst2UI CCWGG 3 cut(s) 545, 749, 795
Bst4CI ACNGT 3 cut(s) 88, 695, 805
BstACI GRCGYC 1 cut(s) 811
BstAPI GCANNNNNTGC 1 cut(s) 181
BstBAI YACGTR 1 cut(s) 878
BstC8I GCNNGC 1 cut(s) 859
BstDEI CTNAG 3 cut(s) 537, 867, 887
BstDSI CCRYGG 1 cut(s) 773
BstF5I GGATG 1 cut(s) 562
BstMAI GTCTC 2 cut(s) 395, 818
BstMWI GCNNNNNNNGC 2 cut(s) 47, 181
BstNI CCWGG 3 cut(s) 545, 749, 795
BstNSI RCATGY 1 cut(s) 861
BstSCI CCNGG 4 cut(s) 475, 543, 747, 793
BstV1I GCAGC 4 cut(s) 58, 159, 195, 484
BstX2I RGATCY 4 cut(s) 52, 442, 496, 562
BstYI RGATCY 4 cut(s) 52, 442, 496, 562
Bsu15I ATCGAT 1 cut(s) 369
BsuRI GGCC 2 cut(s) 302, 965
BsuTUI ATCGAT 1 cut(s) 369
BtgI CCRYGG 1 cut(s) 773
BtsCI GGATG 1 cut(s) 562
BtsI GCAGTG 1 cut(s) 229
BtsIMutI CAGTG 4 cut(s) 229, 510, 700, 919
BveI ACCTGC 1 cut(s) 248
Cac8I GCNNGC 1 cut(s) 859
Cfr13I GGNCC 2 cut(s) 301, 541
ClaI ATCGAT 1 cut(s) 369
CseI GACGC 1 cut(s) 800
CsiI ACCWGGT 1 cut(s) 793
Csp6I GTAC 3 cut(s) 285, 323, 875
CviAII CATG 5 cut(s) 59, 254, 774, 858, 981
CviQI GTAC 3 cut(s) 285, 323, 875
DdeI CTNAG 3 cut(s) 537, 867, 887
DraI TTTAAA 1 cut(s) 609
DriI GACNNNNNGTC 1 cut(s) 138
Eam1105I GACNNNNNGTC 1 cut(s) 138
EciI GGCGGA 1 cut(s) 65
Eco130I CCWWGG 4 cut(s) 42, 405, 552, 773
Eco31I GGTCTC 1 cut(s) 395
Eco47I GGWCC 1 cut(s) 541
Eco57I CTGAAG 2 cut(s) 252, 534
EcoRII CCWGG 3 cut(s) 543, 747, 793
EcoT14I CCWWGG 4 cut(s) 42, 405, 552, 773
ErhI CCWWGG 4 cut(s) 42, 405, 552, 773
Esp3I CGTCTC 1 cut(s) 818
FaeI CATG 5 cut(s) 62, 257, 777, 861, 984
FaqI GGGAC 4 cut(s) 518, 717, 864, 941
FatI CATG 5 cut(s) 58, 253, 773, 857, 980
FbaI TGATCA 2 cut(s) 454, 483
Fnu4HI GCNGC 4 cut(s) 72, 173, 209, 473
FokI GGATG 1 cut(s) 569
Fsp4HI GCNGC 4 cut(s) 72, 173, 209, 473
FspBI CTAG 2 cut(s) 68, 779
GluI GCNGC 4 cut(s) 72, 173, 209, 473
GsaI CCCAGC 3 cut(s) 215, 851, 942
GsuI CTGGAG 1 cut(s) 660
HaeIII GGCC 2 cut(s) 302, 965
HapII CCGG 2 cut(s) 23, 476
HgaI GACGC 1 cut(s) 800
Hin1I GRCGYC 1 cut(s) 811
Hin1II CATG 5 cut(s) 62, 257, 777, 861, 984
HinfI GANTC 6 cut(s) 250, 362, 371, 518, 533, 568
HpaII CCGG 2 cut(s) 23, 476
HphI GGTGA 1 cut(s) 608
Hpy166II GTNNAC 1 cut(s) 599
Hpy188I TCNGA 9 cut(s) 154, 312, 384, 442, 523, 538, 567, 592, 621
Hpy188III TCNNGA 3 cut(s) 230, 448, 889
Hpy8I GTNNAC 1 cut(s) 599
HpyAV CCTTC 3 cut(s) 713, 719, 976
HpyCH4III ACNGT 3 cut(s) 88, 695, 805
HpyCH4IV ACGT 2 cut(s) 325, 877
HpyCH4V TGCA 5 cut(s) 175, 184, 257, 831, 857
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 181
HpyF3I CTNAG 3 cut(s) 537, 867, 887
HpySE526I ACGT 2 cut(s) 325, 877
Hsp92I GRCGYC 1 cut(s) 811
Hsp92II CATG 5 cut(s) 62, 257, 777, 861, 984
Ksp22I TGATCA 2 cut(s) 454, 483
Lsp1109I GCAGC 4 cut(s) 58, 159, 195, 484
LweI GCATC 4 cut(s) 9, 341, 378, 625
MabI ACCWGGT 1 cut(s) 793
MaeI CTAG 2 cut(s) 68, 779
MaeII ACGT 2 cut(s) 325, 877
MaeIII GTNAC 1 cut(s) 917
MflI RGATCY 4 cut(s) 52, 442, 496, 562
MluCI AATT 5 cut(s) 27, 275, 306, 602, 973
MlyI GAGTC 1 cut(s) 244
MnlI CCTC 9 cut(s) 25, 40, 126, 181, 198, 517, 532, 553, 885
MseI TTAA 3 cut(s) 278, 608, 783
MspI CCGG 2 cut(s) 23, 476
MspR9I CCNGG 4 cut(s) 477, 545, 749, 795
Mva1269I GAATGC 1 cut(s) 11
MvaI CCWGG 3 cut(s) 545, 749, 795
MwoI GCNNNNNNNGC 2 cut(s) 47, 181
NciI CCSGG 1 cut(s) 477
NcoI CCATGG 1 cut(s) 773
NlaIII CATG 5 cut(s) 62, 257, 777, 861, 984
NlaIV GGNNCC 2 cut(s) 197, 429
NmuCI GTSAC 1 cut(s) 917
NspI RCATGY 1 cut(s) 861
PaeI GCATGC 1 cut(s) 861
PctI GAATGC 1 cut(s) 11
PfeI GAWTC 5 cut(s) 362, 371, 518, 533, 568
Pfl23II CGTACG 1 cut(s) 322
PkrI GCNGC 4 cut(s) 73, 174, 210, 474
PleI GAGTC 1 cut(s) 244
PpsI GAGTC 1 cut(s) 244
Ppu21I YACGTR 1 cut(s) 878
Psp6I CCWGG 3 cut(s) 543, 747, 793
PspFI CCCAGC 3 cut(s) 211, 847, 938
PspGI CCWGG 3 cut(s) 543, 747, 793
PspLI CGTACG 1 cut(s) 322
PspN4I GGNNCC 2 cut(s) 197, 429
PspPI GGNCC 2 cut(s) 301, 541
PsrI GAACNNNNNNTAC 2 cut(s) 867, 899
PsuI RGATCY 4 cut(s) 52, 442, 496, 562
RsaI GTAC 3 cut(s) 286, 324, 876
RsaNI GTAC 3 cut(s) 285, 323, 875
SaqAI TTAA 3 cut(s) 278, 608, 783
SatI GCNGC 4 cut(s) 72, 173, 209, 473
Sau96I GGNCC 2 cut(s) 301, 541
SchI GAGTC 1 cut(s) 244
ScrFI CCNGG 4 cut(s) 477, 545, 749, 795
SexAI ACCWGGT 1 cut(s) 793
SfaNI GCATC 4 cut(s) 9, 341, 378, 625
SinI GGWCC 1 cut(s) 541
SphI GCATGC 1 cut(s) 861
Sse9I AATT 5 cut(s) 27, 275, 306, 602, 973
SsiI CCGC 1 cut(s) 50
SspMI CTAG 2 cut(s) 68, 779
StyD4I CCNGG 4 cut(s) 475, 543, 747, 793
StyI CCWWGG 4 cut(s) 42, 405, 552, 773
TaaI ACNGT 3 cut(s) 88, 695, 805
TaiI ACGT 2 cut(s) 328, 880
TaqI TCGA 2 cut(s) 17, 369
TasI AATT 5 cut(s) 27, 275, 306, 602, 973
TfiI GAWTC 5 cut(s) 362, 371, 518, 533, 568
Tru1I TTAA 3 cut(s) 278, 608, 783
Tru9I TTAA 3 cut(s) 278, 608, 783
TscAI CASTG 4 cut(s) 229, 517, 700, 926
TseFI GTSAC 1 cut(s) 917
TseI GCWGC 4 cut(s) 71, 172, 208, 472
Tsp45I GTSAC 1 cut(s) 917
TspDTI ATGAA 2 cut(s) 47, 338
TspGWI ACGGA 1 cut(s) 644
TspRI CASTG 4 cut(s) 229, 517, 700, 926
VpaK11BI GGWCC 1 cut(s) 541
XapI RAATTY 1 cut(s) 306
XceI RCATGY 1 cut(s) 861
XspI CTAG 2 cut(s) 68, 779
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.