Rw1G037740

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Forward (+)
65341908 .. 65343274
1367 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G037740.1

Sequence Viewer

Length: 450 bp
ATGAAACGACATAAACCTAAAAAGCTCAAAATACCGGATCTGGAAGACGACCCGTTGAAGAAGAGGAAACCTGTCGTAAAAGAAATCGATGAAGATGGCTGTCCCGTCTGCAGTGACAAAATCCCACTGGGCGTAGTTATTGATCCTGTATATGACGAAGTTTGCATTGGTTGTGGCATAATTGGAGAGATCTGCTGTTCCAAGGGAGCATATGCTGTTCTCAAGAGGTGTGGTGTTTGTATGGCTATAGCCGCCTATAGGTCACTGGTACTGGGACGGCAGAACAAGGAAGAGGATGAGGTTATGGTAAATGTTGGGAAGGACAACAAGAACGAGGATGAGGTTGTGGTCGTGGATGACAATGGCAAGGAAGATGAGGCTAAAGTTGCAGGTGGAAATGAGTCTTCAAATCAGATCAAGCATCAGAGCAGGAGTGAGAAGAAGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

16.37

Weight (kDa)

5.8

Isoelectric Point (pI)

45.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 380
Acc36I ACCTGC 1 cut(s) 380
AciI CCGC 1 cut(s) 252
AclWI GGATC 2 cut(s) 45, 137
AfaI GTAC 1 cut(s) 270
AfiI CCNNNNNNNGG 1 cut(s) 258
AgsI TTSAA 2 cut(s) 58, 408
AjuI GAANNNNNNNTTGG 2 cut(s) 150, 182
AluBI AGCT 1 cut(s) 25
AluI AGCT 1 cut(s) 25
AlwI GGATC 2 cut(s) 45, 137
BbsI GAAGAC 2 cut(s) 51, 396
BccI CCATC 1 cut(s) 89
BceAI ACGGC 1 cut(s) 293
BfmI CTRYAG 3 cut(s) 109, 246, 256
BfuAI ACCTGC 1 cut(s) 380
BglII AGATCT 1 cut(s) 189
BisI GCNGC 1 cut(s) 252
BlsI GCNGC 1 cut(s) 253
BmrI ACTGGG 2 cut(s) 137, 281
BmsI GCATC 1 cut(s) 430
BmuI ACTGGG 2 cut(s) 137, 281
BpiI GAAGAC 2 cut(s) 51, 396
BpuEI CTTGAG 1 cut(s) 206
Bsa29I ATCGAT 1 cut(s) 87
BsaJI CCNNGG 1 cut(s) 201
BsaWI WCCGGW 1 cut(s) 34
Bsc4I CCNNNNNNNGG 1 cut(s) 258
Bse1I ACTGG 3 cut(s) 132, 270, 276
BseCI ATCGAT 1 cut(s) 87
BseDI CCNNGG 1 cut(s) 201
BseGI GGATG 3 cut(s) 301, 343, 361
BseLI CCNNNNNNNGG 1 cut(s) 258
BseNI ACTGG 3 cut(s) 132, 270, 276
BshVI ATCGAT 1 cut(s) 87
BsiSI CCGG 1 cut(s) 35
BslFI GGGAC 2 cut(s) 87, 288
BslI CCNNNNNNNGG 1 cut(s) 258
BsmFI GGGAC 2 cut(s) 87, 288
Bsp143I GATC 4 cut(s) 37, 142, 189, 414
BspACI CCGC 1 cut(s) 252
BspDI ATCGAT 1 cut(s) 87
BspMAI CTGCAG 1 cut(s) 113
BspMI ACCTGC 1 cut(s) 380
BspPI GGATC 2 cut(s) 45, 137
BsrI ACTGG 3 cut(s) 132, 270, 276
BssECI CCNNGG 1 cut(s) 201
BssMI GATC 4 cut(s) 37, 142, 189, 414
BssT1I CCWWGG 1 cut(s) 201
Bst6I CTCTTC 3 cut(s) 56, 285, 437
BstF5I GGATG 3 cut(s) 301, 343, 361
BstKTI GATC 4 cut(s) 40, 145, 192, 417
BstMBI GATC 4 cut(s) 37, 142, 189, 414
BstMWI GCNNNNNNNGC 2 cut(s) 251, 386
BstSFI CTRYAG 3 cut(s) 109, 246, 256
BstV2I GAAGAC 2 cut(s) 51, 396
BstX2I RGATCY 2 cut(s) 37, 189
BstYI RGATCY 2 cut(s) 37, 189
Bsu15I ATCGAT 1 cut(s) 87
BsuTUI ATCGAT 1 cut(s) 87
BtsCI GGATG 3 cut(s) 301, 343, 361
BtsI GCAGTG 1 cut(s) 118
BtsIMutI CAGTG 3 cut(s) 118, 125, 263
BveI ACCTGC 1 cut(s) 380
ClaI ATCGAT 1 cut(s) 87
Csp6I GTAC 1 cut(s) 269
CspCI CAANNNNNGTGG 2 cut(s) 211, 246
CviJI RGCY 5 cut(s) 25, 99, 245, 251, 380
CviKI_1 RGCY 5 cut(s) 25, 99, 245, 251, 380
CviQI GTAC 1 cut(s) 269
DpnI GATC 4 cut(s) 39, 144, 191, 416
DpnII GATC 4 cut(s) 37, 142, 189, 414
Eam1104I CTCTTC 3 cut(s) 56, 285, 437
EarI CTCTTC 3 cut(s) 56, 285, 437
Eco130I CCWWGG 1 cut(s) 201
EcoT14I CCWWGG 1 cut(s) 201
ErhI CCWWGG 1 cut(s) 201
FaqI GGGAC 2 cut(s) 87, 288
FauNDI CATATG 1 cut(s) 211
Fnu4HI GCNGC 1 cut(s) 252
FokI GGATG 3 cut(s) 308, 350, 368
Fsp4HI GCNGC 1 cut(s) 252
GluI GCNGC 1 cut(s) 252
HapII CCGG 1 cut(s) 35
HinfI GANTC 1 cut(s) 401
HpaII CCGG 1 cut(s) 35
Hpy188I TCNGA 2 cut(s) 414, 426
Hpy188III TCNNGA 2 cut(s) 41, 223
HpyAV CCTTC 1 cut(s) 313
HpyCH4V TGCA 3 cut(s) 111, 165, 389
HpyF10VI GCNNNNNNNGC 2 cut(s) 251, 386
Kzo9I GATC 4 cut(s) 37, 142, 189, 414
LmnI GCTCC 1 cut(s) 206
LpnPI CCDG 9 cut(s) 26, 48, 84, 113, 159, 251, 257, 375, 415
LweI GCATC 1 cut(s) 430
MaeIII GTNAC 2 cut(s) 113, 261
MalI GATC 4 cut(s) 39, 144, 191, 416
MboI GATC 4 cut(s) 37, 142, 189, 414
MboII GAAGA 7 cut(s) 56, 70, 73, 104, 302, 383, 396
MflI RGATCY 2 cut(s) 37, 189
MluCI AATT 1 cut(s) 180
MlyI GAGTC 1 cut(s) 410
MnlI CCTC 7 cut(s) 57, 219, 286, 292, 328, 334, 370
MspI CCGG 1 cut(s) 35
MwoI GCNNNNNNNGC 2 cut(s) 251, 386
NdeI CATATG 1 cut(s) 211
NdeII GATC 4 cut(s) 37, 142, 189, 414
NmuCI GTSAC 2 cut(s) 113, 261
PaqCI CACCTGC 1 cut(s) 380
PkrI GCNGC 1 cut(s) 253
PleI GAGTC 1 cut(s) 409
PpsI GAGTC 1 cut(s) 409
PstI CTGCAG 1 cut(s) 113
PsuI RGATCY 2 cut(s) 37, 189
RsaI GTAC 1 cut(s) 270
RsaNI GTAC 1 cut(s) 269
SatI GCNGC 1 cut(s) 252
Sau3AI GATC 4 cut(s) 37, 142, 189, 414
SchI GAGTC 1 cut(s) 410
SetI ASST 8 cut(s) 19, 27, 73, 230, 263, 303, 345, 394
SfaNI GCATC 1 cut(s) 430
SfcI CTRYAG 3 cut(s) 109, 246, 256
SmlI CTYRAG 1 cut(s) 221
SmoI CTYRAG 1 cut(s) 221
Sse9I AATT 1 cut(s) 180
SsiI CCGC 1 cut(s) 252
StyI CCWWGG 1 cut(s) 201
TaqI TCGA 1 cut(s) 87
TasI AATT 1 cut(s) 180
TauI GCSGC 1 cut(s) 254
TscAI CASTG 3 cut(s) 118, 132, 270
TseFI GTSAC 2 cut(s) 113, 261
Tsp45I GTSAC 2 cut(s) 113, 261
TspDTI ATGAA 2 cut(s) 17, 105
TspRI CASTG 3 cut(s) 118, 132, 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.