Rh7CG314000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000653
Physical Location & Seq
Forward (+)
33402095 .. 33406565
4471 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG314000.1

Sequence Viewer

Length: 873 bp
ATGAGTATATTGGCACTATATTTGACTTATGATGAATTACAATACCTAATGCTGCTGTTGTGCATGTATACCAAAGCTATGGTAGTGATTGAAAATATACCTGAGCACAAAACCGATGAGAAATTACTTTTTACGGACAAGGAATATGGAAGAAGGCGCTTGATTATACCAGAGGACGAAGCCGCCGAGTTCGAGGCTCAGGCGAGAAGGAGATGGAAGAAGGAAAATAGAAAGCTTCACAGACCGAATCTGAACAACAGAGCCGAAGTCTCGGAGCTTAGGAAAAGGCTTCAAAGGAAGACAAGCTCTGACCCTGAAAAAGAAGAAGATGGAGAAGTTAGAGATTATGAATATGGCTGTGGTGTTTGTGGTAACATGGATGAGAATCACGATGATCGGGAGTGCCCATGGCTAGATAAACTCCCACCACACAAAACTGTTGTTGGCCCTTACTATGACATAGTTTGCATCTGCTGTGGCCAGATTGGTGAGCTGTGCTGTTCCAAGAGAGGTTCCAAGCGAGGATATGCTGTTCTCAAGTCCTGTATATTTTGTCAGTCAGCTGGTCACTGGCGTTGGGAATGCCTCACTGGCCCCAAGATTCCGGGGCTCACAGAGGAACTCGTCGAGGAGGTCATATCCTTTGAACCATCCTGCAAGAACATGGAAGAGTATGAGGTTGTGTTTGAGGATGCGATTTACACCAAGGAAGATGGGGCTCAAGGTGGTTCTTCTATTCGAGATACTCACCGGCCTTGGGAATGCCCCAAGGACCCCAAGATTCCAGGGCTCTCAGAGATGTTCATCAAGGCTGTCCTATCCTGCAAGAACATGGAAGGGGATGGGGATGAGGATGAGGAAGATGGGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

290

Amino Acids

33.42

Weight (kDa)

4.98

Isoelectric Point (pI)

61.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 68
AciI CCGC 1 cut(s) 183
AcoI YGGCCR 1 cut(s) 478
AfiI CCNNNNNNNGG 1 cut(s) 757
AgsI TTSAA 3 cut(s) 92, 293, 647
AjnI CCWGG 1 cut(s) 784
AloI GAACNNNNNNTCC 2 cut(s) 516, 548
AluBI AGCT 6 cut(s) 77, 235, 277, 306, 493, 563
AluI AGCT 6 cut(s) 77, 235, 277, 306, 493, 563
Alw21I GWGCWC 1 cut(s) 108
Alw26I GTCTC 1 cut(s) 274
AoxI GGCC 4 cut(s) 445, 478, 592, 752
ApeKI GCWGC 1 cut(s) 52
AspLEI GCGC 1 cut(s) 159
AspS9I GGNCC 3 cut(s) 446, 593, 772
AsuC2I CCSGG 1 cut(s) 606
AsuHPI GGTGA 2 cut(s) 500, 740
AvaII GGWCC 1 cut(s) 772
BaeGI GKGCMC 1 cut(s) 407
BalI TGGCCA 1 cut(s) 480
BanII GRGCYC 3 cut(s) 612, 721, 792
BbsI GAAGAC 1 cut(s) 305
Bbv12I GWGCWC 1 cut(s) 108
BbvI GCAGC 1 cut(s) 39
BccI CCATC 6 cut(s) 207, 323, 658, 707, 836, 857
BciT130I CCWGG 1 cut(s) 786
BcnI CCSGG 1 cut(s) 606
BcoDI GTCTC 1 cut(s) 274
BfaI CTAG 1 cut(s) 413
BfoI RGCGCY 1 cut(s) 160
BglI GCCNNNNNGGC 1 cut(s) 591
BisI GCNGC 2 cut(s) 53, 183
BlsI GCNGC 2 cut(s) 54, 184
Bme1390I CCNGG 2 cut(s) 606, 786
Bme18I GGWCC 1 cut(s) 772
BmgT120I GGNCC 3 cut(s) 446, 593, 772
BmiI GGNNCC 3 cut(s) 514, 595, 774
BmrFI CCNGG 2 cut(s) 606, 786
BmsI GCATC 2 cut(s) 477, 682
BpiI GAAGAC 1 cut(s) 305
Bpu10I CCTNAGC 3 cut(s) 102, 198, 278
BpuEI CTTGAG 2 cut(s) 521, 705
BpuMI CCSGG 1 cut(s) 606
BsaBI GATNNNNATC 2 cut(s) 384, 803
BsaJI CCNNGG 6 cut(s) 407, 605, 705, 755, 768, 785
Bsc4I CCNNNNNNNGG 1 cut(s) 757
Bse118I RCCGGY 1 cut(s) 750
Bse1I ACTGG 2 cut(s) 575, 595
Bse8I GATNNNNATC 2 cut(s) 384, 803
BseBI CCWGG 1 cut(s) 786
BseDI CCNNGG 6 cut(s) 407, 605, 705, 755, 768, 785
BseGI GGATG 6 cut(s) 385, 650, 697, 847, 853, 859
BseJI GATNNNNATC 2 cut(s) 384, 803
BseLI CCNNNNNNNGG 1 cut(s) 757
BseMII CTCAG 3 cut(s) 93, 212, 807
BseNI ACTGG 2 cut(s) 575, 595
BseRI GAGGAG 1 cut(s) 644
BseSI GKGCMC 1 cut(s) 407
BseXI GCAGC 1 cut(s) 39
BshFI GGCC 4 cut(s) 447, 480, 594, 754
BsiHKAI GWGCWC 1 cut(s) 108
BsiSI CCGG 2 cut(s) 605, 751
BslI CCNNNNNNNGG 1 cut(s) 757
BsmAI GTCTC 1 cut(s) 274
BsmI GAATGC 2 cut(s) 587, 767
BsnI GGCC 4 cut(s) 447, 480, 594, 754
Bsp1286I GDGCHC 5 cut(s) 108, 407, 612, 721, 792
Bsp143I GATC 1 cut(s) 394
Bsp19I CCATGG 1 cut(s) 407
BspACI CCGC 1 cut(s) 183
BspANI GGCC 4 cut(s) 447, 480, 594, 754
BspCNI CTCAG 3 cut(s) 94, 211, 806
BspLI GGNNCC 3 cut(s) 514, 595, 774
BsrFI RCCGGY 1 cut(s) 750
BsrI ACTGG 2 cut(s) 575, 595
BssAI RCCGGY 1 cut(s) 750
BssECI CCNNGG 6 cut(s) 407, 605, 705, 755, 768, 785
BssMI GATC 1 cut(s) 394
BssNAI GTATAC 1 cut(s) 69
BssT1I CCWWGG 4 cut(s) 407, 705, 755, 768
Bst1107I GTATAC 1 cut(s) 69
Bst2UI CCWGG 1 cut(s) 786
Bst4CI ACNGT 1 cut(s) 439
Bst6I CTCTTC 1 cut(s) 663
BstDEI CTNAG 4 cut(s) 102, 198, 278, 793
BstDSI CCRYGG 1 cut(s) 407
BstF5I GGATG 6 cut(s) 385, 650, 697, 847, 853, 859
BstH2I RGCGCY 1 cut(s) 160
BstHHI GCGC 1 cut(s) 159
BstKTI GATC 1 cut(s) 397
BstMAI GTCTC 1 cut(s) 274
BstMBI GATC 1 cut(s) 394
BstMWI GCNNNNNNNGC 1 cut(s) 591
BstNI CCWGG 1 cut(s) 786
BstNSI RCATGY 1 cut(s) 67
BstSCI CCNGG 2 cut(s) 604, 784
BstSLI GKGCMC 1 cut(s) 407
BstV1I GCAGC 1 cut(s) 39
BstV2I GAAGAC 1 cut(s) 305
BstXI CCANNNNNNTGG 1 cut(s) 79
BstZ17I GTATAC 1 cut(s) 69
BsuRI GGCC 4 cut(s) 447, 480, 594, 754
BtgI CCRYGG 1 cut(s) 407
BtsCI GGATG 6 cut(s) 385, 650, 697, 847, 853, 859
BtsIMutI CAGTG 2 cut(s) 568, 588
CfoI GCGC 1 cut(s) 159
Cfr10I RCCGGY 1 cut(s) 750
Cfr13I GGNCC 3 cut(s) 446, 593, 772
CviAII CATG 5 cut(s) 64, 376, 408, 664, 832
DdeI CTNAG 4 cut(s) 102, 198, 278, 793
DpnI GATC 1 cut(s) 396
DpnII GATC 1 cut(s) 394
EaeI YGGCCR 1 cut(s) 478
Eam1104I CTCTTC 1 cut(s) 663
EarI CTCTTC 1 cut(s) 663
Eco130I CCWWGG 4 cut(s) 407, 705, 755, 768
Eco24I GRGCYC 3 cut(s) 612, 721, 792
Eco47I GGWCC 1 cut(s) 772
EcoO109I RGGNCCY 1 cut(s) 772
EcoRII CCWGG 1 cut(s) 784
EcoT14I CCWWGG 4 cut(s) 407, 705, 755, 768
EcoT38I GRGCYC 3 cut(s) 612, 721, 792
ErhI CCWWGG 4 cut(s) 407, 705, 755, 768
FaeI CATG 5 cut(s) 67, 379, 411, 667, 835
FatI CATG 5 cut(s) 63, 375, 407, 663, 831
FblI GTMKAC 1 cut(s) 68
Fnu4HI GCNGC 2 cut(s) 53, 183
FokI GGATG 6 cut(s) 392, 637, 704, 854, 860, 866
FriOI GRGCYC 3 cut(s) 612, 721, 792
Fsp4HI GCNGC 2 cut(s) 53, 183
FspBI CTAG 1 cut(s) 413
GlaI GCGC 1 cut(s) 158
GluI GCNGC 2 cut(s) 53, 183
HaeII RGCGCY 1 cut(s) 160
HaeIII GGCC 4 cut(s) 447, 480, 594, 754
HapII CCGG 2 cut(s) 605, 751
HhaI GCGC 1 cut(s) 159
Hin1II CATG 5 cut(s) 67, 379, 411, 667, 835
Hin6I GCGC 1 cut(s) 157
HinP1I GCGC 1 cut(s) 157
HindIII AAGCTT 1 cut(s) 233
HinfI GANTC 4 cut(s) 247, 385, 601, 781
HpaII CCGG 2 cut(s) 605, 751
HphI GGTGA 2 cut(s) 500, 740
Hpy166II GTNNAC 1 cut(s) 69
Hpy188I TCNGA 4 cut(s) 252, 274, 310, 796
Hpy188III TCNNGA 3 cut(s) 389, 398, 740
Hpy8I GTNNAC 1 cut(s) 69
Hpy99I CGWCG 1 cut(s) 629
HpyAV CCTTC 4 cut(s) 147, 201, 214, 830
HpyCH4III ACNGT 1 cut(s) 439
HpyCH4V TGCA 4 cut(s) 63, 468, 657, 825
HpyF10VI GCNNNNNNNGC 1 cut(s) 591
HpyF3I CTNAG 4 cut(s) 102, 198, 278, 793
Hsp92II CATG 5 cut(s) 67, 379, 411, 667, 835
HspAI GCGC 1 cut(s) 157
Kzo9I GATC 1 cut(s) 394
LmnI GCTCC 1 cut(s) 274
Lsp1109I GCAGC 1 cut(s) 39
LweI GCATC 2 cut(s) 477, 682
MaeI CTAG 1 cut(s) 413
MaeIII GTNAC 2 cut(s) 371, 566
MalI GATC 1 cut(s) 396
MboI GATC 1 cut(s) 394
MboII GAAGA 9 cut(s) 162, 229, 310, 335, 338, 680, 722, 723, 872
MhlI GDGCHC 5 cut(s) 108, 407, 612, 721, 792
MlsI TGGCCA 1 cut(s) 480
MluCI AATT 2 cut(s) 35, 122
MluNI TGGCCA 1 cut(s) 480
Mox20I TGGCCA 1 cut(s) 480
MscI TGGCCA 1 cut(s) 480
MseI TTAA 1 cut(s) 871
Msp20I TGGCCA 1 cut(s) 480
MspA1I CMGCKG 1 cut(s) 563
MspI CCGG 2 cut(s) 605, 751
MspR9I CCNGG 2 cut(s) 606, 786
Mva1269I GAATGC 2 cut(s) 587, 767
MvaI CCWGG 1 cut(s) 786
MwoI GCNNNNNNNGC 1 cut(s) 591
NciI CCSGG 1 cut(s) 606
NcoI CCATGG 1 cut(s) 407
NdeII GATC 1 cut(s) 394
NlaIII CATG 5 cut(s) 67, 379, 411, 667, 835
NlaIV GGNNCC 3 cut(s) 514, 595, 774
NmeAIII GCCGAG 1 cut(s) 211
NmuCI GTSAC 1 cut(s) 566
NspI RCATGY 1 cut(s) 67
PcsI WCGNNNNNNNCGW 1 cut(s) 183
PctI GAATGC 2 cut(s) 587, 767
PfeI GAWTC 4 cut(s) 247, 385, 601, 781
PkrI GCNGC 2 cut(s) 54, 184
PpuMI RGGWCCY 1 cut(s) 772
Psp5II RGGWCCY 1 cut(s) 772
Psp6I CCWGG 1 cut(s) 784
PspGI CCWGG 1 cut(s) 784
PspN4I GGNNCC 3 cut(s) 514, 595, 774
PspPI GGNCC 3 cut(s) 446, 593, 772
PspPPI RGGWCCY 1 cut(s) 772
PvuII CAGCTG 1 cut(s) 563
SaqAI TTAA 1 cut(s) 871
SatI GCNGC 2 cut(s) 53, 183
Sau3AI GATC 1 cut(s) 394
Sau96I GGNCC 3 cut(s) 446, 593, 772
ScrFI CCNGG 2 cut(s) 606, 786
SduI GDGCHC 5 cut(s) 108, 407, 612, 721, 792
SfaNI GCATC 2 cut(s) 477, 682
SinI GGWCC 1 cut(s) 772
SmlI CTYRAG 2 cut(s) 536, 720
SmoI CTYRAG 2 cut(s) 536, 720
Sse9I AATT 2 cut(s) 35, 122
SsiI CCGC 1 cut(s) 183
SspMI CTAG 1 cut(s) 413
StyD4I CCNGG 2 cut(s) 604, 784
StyI CCWWGG 4 cut(s) 407, 705, 755, 768
TaaI ACNGT 1 cut(s) 439
TaqI TCGA 3 cut(s) 192, 627, 739
TaqII GACCGA 1 cut(s) 259
TasI AATT 2 cut(s) 35, 122
TauI GCSGC 1 cut(s) 185
TfiI GAWTC 4 cut(s) 247, 385, 601, 781
Tru1I TTAA 1 cut(s) 871
Tru9I TTAA 1 cut(s) 871
TscAI CASTG 2 cut(s) 575, 595
TseFI GTSAC 1 cut(s) 566
TseI GCWGC 1 cut(s) 52
Tsp45I GTSAC 1 cut(s) 566
TspDTI ATGAA 3 cut(s) 48, 363, 793
TspGWI ACGGA 1 cut(s) 149
TspRI CASTG 2 cut(s) 575, 595
VpaK11BI GGWCC 1 cut(s) 772
XceI RCATGY 1 cut(s) 67
XmiI GTMKAC 1 cut(s) 68
XspI CTAG 1 cut(s) 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.