FvH4_7g29800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000653
Physical Location & Seq
Reverse (-)
21845091 .. 21845770
680 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g29800.t1

Sequence Viewer

Length: 420 bp
ATGAGTCTGATGATGAACGGATCCGGAGGGGGGGAAATGATGAAAATACCGGATATGGTACACGAGGTAGACGAGGTCCTGAGGCTGATGAGGAGGAAACCTGCCGAAAAAGACCATCACGATGGCTGTTTCGTCTGTGGTCGCGATCACTTAGCTGAGGACTGCCCGTGCTTTGATAAAATCCCACCAGGCGTAGAACTTGACAGAGATTACGACCAAGTCTGCATTGGTTGTGGGAGAATCGGAGAGATCTGCTGTTCCAAGGGAGCGTATGCTGTTCTGAGGAGGTGTGGTGGTTGTGGCTGGAGGGGTCACTGGTACTGGGACGACAAGTGCGATAAGGACTTTGTCCACCACCCCAACAGAGTCAAGCTCTCCTTCTTCAAGGACCTCCTGTCCGCTGAACAAGGAAGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

15.85

Weight (kDa)

6.36

Isoelectric Point (pI)

29.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 109
AccI GTMKAC 1 cut(s) 69
AccII CGCG 1 cut(s) 144
AccIII TCCGGA 1 cut(s) 23
AciI CCGC 1 cut(s) 399
AclWI GGATC 2 cut(s) 15, 28
AfaI GTAC 2 cut(s) 60, 320
AfiI CCNNNNNNNGG 1 cut(s) 30
AgsI TTSAA 1 cut(s) 385
AhdI GACNNNNNGTC 1 cut(s) 394
AjnI CCWGG 1 cut(s) 187
AluBI AGCT 2 cut(s) 155, 373
AluI AGCT 2 cut(s) 155, 373
AlwI GGATC 2 cut(s) 15, 28
Aor13HI TCCGGA 1 cut(s) 23
AspS9I GGNCC 2 cut(s) 76, 388
AvaII GGWCC 2 cut(s) 76, 388
AxyI CCTNAGG 1 cut(s) 80
BamHI GGATCC 1 cut(s) 20
BauI CACGAG 1 cut(s) 62
BbvCI CCTCAGC 1 cut(s) 156
BccI CCATC 2 cut(s) 116, 123
BciT130I CCWGG 1 cut(s) 189
BfuAI ACCTGC 1 cut(s) 109
BglII AGATCT 1 cut(s) 249
Bme1390I CCNGG 1 cut(s) 189
Bme18I GGWCC 2 cut(s) 76, 388
BmeRI GACNNNNNGTC 1 cut(s) 394
BmgT120I GGNCC 2 cut(s) 76, 388
BmiI GGNNCC 1 cut(s) 22
BmrFI CCNGG 1 cut(s) 189
BmrI ACTGGG 1 cut(s) 331
BmuI ACTGGG 1 cut(s) 331
BplI GAGNNNNNCTC 2 cut(s) 357, 389
BpmI CTGGAG 1 cut(s) 325
Bpu10I CCTNAGC 1 cut(s) 156
BsaJI CCNNGG 1 cut(s) 261
BsaWI WCCGGW 2 cut(s) 23, 49
BsaXI ACNNNNNCTCC 2 cut(s) 277, 307
Bsc4I CCNNNNNNNGG 1 cut(s) 30
Bse1I ACTGG 2 cut(s) 320, 326
Bse21I CCTNAGG 1 cut(s) 80
BseAI TCCGGA 1 cut(s) 23
BseBI CCWGG 1 cut(s) 189
BseDI CCNNGG 1 cut(s) 261
BseLI CCNNNNNNNGG 1 cut(s) 30
BseMII CTCAG 3 cut(s) 71, 147, 272
BseNI ACTGG 2 cut(s) 320, 326
BseRI GAGGAG 2 cut(s) 106, 298
Bsh1236I CGCG 1 cut(s) 144
BsiSI CCGG 2 cut(s) 24, 50
BslFI GGGAC 1 cut(s) 338
BslI CCNNNNNNNGG 1 cut(s) 30
BsmFI GGGAC 1 cut(s) 338
Bsp13I TCCGGA 1 cut(s) 23
Bsp143I GATC 3 cut(s) 20, 145, 249
Bsp68I TCGCGA 1 cut(s) 144
BspACI CCGC 1 cut(s) 399
BspCNI CTCAG 3 cut(s) 72, 148, 273
BspEI TCCGGA 1 cut(s) 23
BspFNI CGCG 1 cut(s) 144
BspLI GGNNCC 1 cut(s) 22
BspMI ACCTGC 1 cut(s) 109
BspPI GGATC 2 cut(s) 15, 28
BsrI ACTGG 2 cut(s) 320, 326
BssECI CCNNGG 1 cut(s) 261
BssMI GATC 3 cut(s) 20, 145, 249
BssSI CACGAG 1 cut(s) 62
BssT1I CCWWGG 1 cut(s) 261
Bst2BI CACGAG 1 cut(s) 62
Bst2UI CCWGG 1 cut(s) 189
BstDEI CTNAG 4 cut(s) 80, 151, 156, 281
BstFNI CGCG 1 cut(s) 144
BstKTI GATC 3 cut(s) 23, 148, 252
BstMBI GATC 3 cut(s) 20, 145, 249
BstNI CCWGG 1 cut(s) 189
BstSCI CCNGG 1 cut(s) 187
BstUI CGCG 1 cut(s) 144
BstX2I RGATCY 2 cut(s) 20, 249
BstXI CCANNNNNNTGG 1 cut(s) 122
BstYI RGATCY 2 cut(s) 20, 249
Bsu36I CCTNAGG 1 cut(s) 80
BtsIMutI CAGTG 1 cut(s) 313
BtuMI TCGCGA 1 cut(s) 144
BveI ACCTGC 1 cut(s) 109
Cfr13I GGNCC 2 cut(s) 76, 388
Csp6I GTAC 2 cut(s) 59, 319
CviJI RGCY 5 cut(s) 85, 126, 155, 303, 373
CviKI_1 RGCY 5 cut(s) 85, 126, 155, 303, 373
CviQI GTAC 2 cut(s) 59, 319
DdeI CTNAG 4 cut(s) 80, 151, 156, 281
DpnI GATC 3 cut(s) 22, 147, 251
DpnII GATC 3 cut(s) 20, 145, 249
DriI GACNNNNNGTC 1 cut(s) 394
Eam1105I GACNNNNNGTC 1 cut(s) 394
Eco130I CCWWGG 1 cut(s) 261
Eco47I GGWCC 2 cut(s) 76, 388
Eco81I CCTNAGG 1 cut(s) 80
EcoO109I RGGNCCY 2 cut(s) 76, 388
EcoRII CCWGG 1 cut(s) 187
EcoT14I CCWWGG 1 cut(s) 261
ErhI CCWWGG 1 cut(s) 261
FaiI YATR 2 cut(s) 56, 273
FalI AAGNNNNNCTT 2 cut(s) 362, 394
FaqI GGGAC 1 cut(s) 338
FblI GTMKAC 1 cut(s) 69
GsuI CTGGAG 1 cut(s) 325
HapII CCGG 2 cut(s) 24, 50
HinfI GANTC 3 cut(s) 4, 240, 366
HpaII CCGG 2 cut(s) 24, 50
Hpy166II GTNNAC 3 cut(s) 61, 70, 352
Hpy188I TCNGA 3 cut(s) 9, 245, 282
Hpy188III TCNNGA 4 cut(s) 24, 79, 119, 143
Hpy8I GTNNAC 3 cut(s) 61, 70, 352
HpyAV CCTTC 1 cut(s) 388
HpyCH4V TGCA 1 cut(s) 225
HpyF3I CTNAG 4 cut(s) 80, 151, 156, 281
Kpn2I TCCGGA 1 cut(s) 23
Kzo9I GATC 3 cut(s) 20, 145, 249
LmnI GCTCC 1 cut(s) 266
MaeIII GTNAC 1 cut(s) 311
MalI GATC 3 cut(s) 22, 147, 251
MboI GATC 3 cut(s) 20, 145, 249
MboII GAAGA 1 cut(s) 373
MflI RGATCY 2 cut(s) 20, 249
MlyI GAGTC 2 cut(s) 13, 375
MroI TCCGGA 1 cut(s) 23
MslI CAYNNNNRTG 1 cut(s) 120
MspA1I CMGCKG 1 cut(s) 401
MspI CCGG 2 cut(s) 24, 50
MspR9I CCNGG 1 cut(s) 189
MvaI CCWGG 1 cut(s) 189
MvnI CGCG 1 cut(s) 144
NdeII GATC 3 cut(s) 20, 145, 249
NlaIV GGNNCC 1 cut(s) 22
NmuCI GTSAC 1 cut(s) 311
NruI TCGCGA 1 cut(s) 144
PcsI WCGNNNNNNNCGW 2 cut(s) 69, 333
PfeI GAWTC 1 cut(s) 240
PflFI GACNNNGTC 3 cut(s) 74, 218, 347
PleI GAGTC 2 cut(s) 12, 374
PpsI GAGTC 2 cut(s) 12, 374
PpuMI RGGWCCY 2 cut(s) 76, 388
Psp5II RGGWCCY 2 cut(s) 76, 388
Psp6I CCWGG 1 cut(s) 187
PspGI CCWGG 1 cut(s) 187
PspN4I GGNNCC 1 cut(s) 22
PspPI GGNCC 2 cut(s) 76, 388
PspPPI RGGWCCY 2 cut(s) 76, 388
PsuI RGATCY 2 cut(s) 20, 249
PsyI GACNNNGTC 3 cut(s) 74, 218, 347
RruI TCGCGA 1 cut(s) 144
RsaI GTAC 2 cut(s) 60, 320
RsaNI GTAC 2 cut(s) 59, 319
RseI CAYNNNNRTG 1 cut(s) 120
Sau3AI GATC 3 cut(s) 20, 145, 249
Sau96I GGNCC 2 cut(s) 76, 388
SchI GAGTC 2 cut(s) 13, 375
ScrFI CCNGG 1 cut(s) 189
SetI ASST 7 cut(s) 69, 78, 103, 157, 290, 375, 393
SinI GGWCC 2 cut(s) 76, 388
SmiMI CAYNNNNRTG 1 cut(s) 120
SsiI CCGC 1 cut(s) 399
StyD4I CCNGG 1 cut(s) 187
StyI CCWWGG 1 cut(s) 261
TfiI GAWTC 1 cut(s) 240
TscAI CASTG 1 cut(s) 320
TseFI GTSAC 1 cut(s) 311
Tsp45I GTSAC 1 cut(s) 311
TspDTI ATGAA 2 cut(s) 29, 56
TspGWI ACGGA 1 cut(s) 33
TspRI CASTG 1 cut(s) 320
Tth111I GACNNNGTC 3 cut(s) 74, 218, 347
VpaK11BI GGWCC 2 cut(s) 76, 388
XcmI CCANNNNNNNNNTGG 1 cut(s) 224
XmiI GTMKAC 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.