Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000653

Physical Location & Seq

Genomic Coordinates Reverse (-)

65393205 .. 65398299

Gene Structure 5095 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G037820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGAATGCGGCGAAACCTCGATGCCGGAAATTATCAAGGAAGCCAAGGAGGCGGATCTTCATGAATCACTAGCTGGGAAATTCCCTGTTGCTTTTGCCAAACCAATGAGTGATTTCGAAGGTCGAGCAGAATCTGAATTGTATAGGGATTTGCTGTACTCTTTGCAAGAGGTTGGGTGCCAGATGAGGCTGCTGGGCATTAGCAGTGTTCCTGAAGCCAACAAGAACAGGACTCATGCAGGTAGCAAGGGGGAAGAATTAAAGGGTACTGGTTATACTTTGGCCCAAATTCTGATAGACATCGAACGTTTCGCATCAAAAGTGGGTTTTCATATTGATTTGGATTCCATCGATTCCCGTGATCGGAAGATGCTGAAAGATGAGACCAAGGCTGGTGTTATGGAATGGGAACCTATGGGATCGGATCTCTTGAATGATCAAGTTGAGAAGAAGCAGCCGGGAATGATCAAATGGGTGGATCTGGGGGACAGCACTGAAGAATCGGAGGACGAAGAATCTGAGGACCAGGAAACCAAGGACGAGGATCTGAATCTGGCTGTTGAGAACTGCTCTGATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

193

Amino Acids

21.58

Weight (kDa)

4.4

Isoelectric Point (pI)

45.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000653)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02040 FvH4_6g20312 FvH4_7g29590 FvH4_7g29800 FvH4_7g30370 FvH4_7g30400 FvH4_7g30400 FvH4_7g30400 FvH4_7g30610
rosa_chinensis	RchiOBHm_Chr1g0362141 RchiOBHm_Chr1g0378631 RchiOBHm_Chr1g0378661 RchiOBHm_Chr1g0378841 RchiOBHm_Chr2g0149561
rosa_laevigata	RLG00000002620 RLG00000002622 RLG00000002629 RLG00000003999 RLG00000013563 RLG00000020408 RLG00000020410 RLG00000020421 RLG00000026416 RLG00000026417 RLG00000027654
rosa_multiflora	Rmu_sc0006867.1_g000011 Rmu_sc0006867.1_g000015 Rmu_sc0008712.1_g000008 Rmu_sc0014005.1_g000010
rosa_roxburghii	Rroxscaffold_3G00243880 Rroxscaffold_4G00280330 Rroxscaffold_4G00280340 Rroxscaffold_4G00280410 Rroxscaffold_7G00186160
rosa_rugosa	Rorug01G0302500 Rorug01G0302600 Rorug01G0410200 Rorug01G0410300 Rorug02G0404800.1 Rorug02G0404900 Rorug02G0412300 Rorug07G0158200.1
rosa_samantha	Rh1AG304700 Rh1AG431600 Rh1AG431700 Rh1AG432200 Rh1AG432300 Rh1BG263900 Rh1BG389900 Rh1BG390100 Rh1BG390900 Rh1BG424800 Rh1CG402300 Rh1CG403200 Rh1CG403300 Rh1CG403600 Rh1DG293900 Rh1DG420100 Rh1DG421100 Rh1DG421200 Rh1DG422000 Rh1DG457600 Rh2AG463400 Rh2BG476500 Rh2BG484800 Rh2CG450200 Rh2DG485200 Rh2DG494000 Rh6CG183000 Rh6DG174400 Rh7AG294000 Rh7CG314000 Rh7DG296800 Rh7DG306300
rosa_wichuraiana	Rw1G037740 Rw1G037820 Rw2G038540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	230
AccB1I	GGYRCC	1 cut(s)	177
AciI	CCGC	2 cut(s)	9, 53
AclI	AACGTT	1 cut(s)	307
AclWI	GGATC	5 cut(s)	63, 427, 432, 486, 552
AcsI	RAATTY	2 cut(s)	80, 288
AcuI	CTGAAG	2 cut(s)	234, 516
AfaI	GTAC	2 cut(s)	158, 268
AfiI	CCNNNNNNNGG	1 cut(s)	363
AgsI	TTSAA	1 cut(s)	433
AjnI	CCWGG	1 cut(s)	525
AluBI	AGCT	1 cut(s)	74
AluI	AGCT	1 cut(s)	74
Alw26I	GTCTC	1 cut(s)	377
AlwI	GGATC	5 cut(s)	63, 427, 432, 486, 552
AlwNI	CAGNNNCTG	1 cut(s)	134
AoxI	GGCC	1 cut(s)	282
ApeKI	GCWGC	2 cut(s)	190, 454
ApoI	RAATTY	2 cut(s)	80, 288
AspS9I	GGNCC	2 cut(s)	283, 523
AsuC2I	CCSGG	1 cut(s)	459
AsuII	TTCGAA	1 cut(s)	117
AvaII	GGWCC	1 cut(s)	523
BanI	GGYRCC	1 cut(s)	177
BbvI	GCAGC	2 cut(s)	177, 466
BccI	CCATC	1 cut(s)	356
BciT130I	CCWGG	1 cut(s)	527
BclI	TGATCA	2 cut(s)	436, 465
BcnI	CCSGG	1 cut(s)	459
BcoDI	GTCTC	1 cut(s)	377
BfaI	CTAG	1 cut(s)	71
BfuAI	ACCTGC	1 cut(s)	230
BglI	GCCNNNNNGGC	1 cut(s)	50
BisI	GCNGC	3 cut(s)	10, 191, 455
BlsI	GCNGC	3 cut(s)	11, 192, 456
Bme1390I	CCNGG	2 cut(s)	459, 527
Bme18I	GGWCC	1 cut(s)	523
BmgT120I	GGNCC	2 cut(s)	283, 523
BmiI	GGNNCC	2 cut(s)	179, 411
BmrFI	CCNGG	2 cut(s)	459, 527
BmsI	GCATC	3 cut(s)	12, 323, 360
BplI	GAGNNNNNCTC	1 cut(s)	554
Bpu14I	TTCGAA	1 cut(s)	117
BpuMI	CCSGG	1 cut(s)	459
Bsa29I	ATCGAT	1 cut(s)	351
BsaBI	GATNNNNATC	2 cut(s)	299, 549
BsaI	GGTCTC	1 cut(s)	377
BsaJI	CCNNGG	3 cut(s)	45, 387, 534
Bsc4I	CCNNNNNNNGG	1 cut(s)	363
Bse1I	ACTGG	1 cut(s)	274
Bse8I	GATNNNNATC	2 cut(s)	299, 549
BseBI	CCWGG	1 cut(s)	527
BseCI	ATCGAT	1 cut(s)	351
BseDI	CCNNGG	3 cut(s)	45, 387, 534
BseJI	GATNNNNATC	2 cut(s)	299, 549
BseLI	CCNNNNNNNGG	1 cut(s)	363
BseMII	CTCAG	1 cut(s)	510
BseNI	ACTGG	1 cut(s)	274
BseXI	GCAGC	2 cut(s)	177, 466
BseYI	CCCAGC	2 cut(s)	74, 193
BshFI	GGCC	1 cut(s)	284
BshNI	GGYRCC	1 cut(s)	177
BshVI	ATCGAT	1 cut(s)	351
BsiSI	CCGG	2 cut(s)	26, 458
BslFI	GGGAC	1 cut(s)	500
BslI	CCNNNNNNNGG	1 cut(s)	363
BsmAI	GTCTC	1 cut(s)	377
BsmFI	GGGAC	1 cut(s)	500
BsmI	GAATGC	1 cut(s)	11
BsnI	GGCC	1 cut(s)	284
Bso31I	GGTCTC	1 cut(s)	377
Bsp119I	TTCGAA	1 cut(s)	117
Bsp143I	GATC	8 cut(s)	55, 361, 419, 424, 436, 465, 478, 544
BspACI	CCGC	2 cut(s)	9, 53
BspANI	GGCC	1 cut(s)	284
BspCNI	CTCAG	1 cut(s)	511
BspDI	ATCGAT	1 cut(s)	351
BspHI	TCATGA	1 cut(s)	61
BspLI	GGNNCC	2 cut(s)	179, 411
BspMI	ACCTGC	1 cut(s)	230
BspPI	GGATC	5 cut(s)	63, 427, 432, 486, 552
BspT104I	TTCGAA	1 cut(s)	117
BspT107I	GGYRCC	1 cut(s)	177
BspTNI	GGTCTC	1 cut(s)	377
BsrI	ACTGG	1 cut(s)	274
BssECI	CCNNGG	3 cut(s)	45, 387, 534
BssMI	GATC	8 cut(s)	55, 361, 419, 424, 436, 465, 478, 544
BssT1I	CCWWGG	3 cut(s)	45, 387, 534
Bst2UI	CCWGG	1 cut(s)	527
BstBI	TTCGAA	1 cut(s)	117
BstDEI	CTNAG	1 cut(s)	519
BstKTI	GATC	8 cut(s)	58, 364, 422, 427, 439, 468, 481, 547
BstMAI	GTCTC	1 cut(s)	377
BstMBI	GATC	8 cut(s)	55, 361, 419, 424, 436, 465, 478, 544
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstNI	CCWGG	1 cut(s)	527
BstSCI	CCNGG	2 cut(s)	457, 525
BstV1I	GCAGC	2 cut(s)	177, 466
BstX2I	RGATCY	4 cut(s)	55, 424, 478, 544
BstYI	RGATCY	4 cut(s)	55, 424, 478, 544
Bsu15I	ATCGAT	1 cut(s)	351
BsuRI	GGCC	1 cut(s)	284
BsuTUI	ATCGAT	1 cut(s)	351
BtsI	GCAGTG	1 cut(s)	211
BtsIMutI	CAGTG	2 cut(s)	211, 492
BveI	ACCTGC	1 cut(s)	230
CaiI	CAGNNNCTG	1 cut(s)	134
CciI	TCATGA	1 cut(s)	61
Cfr13I	GGNCC	2 cut(s)	283, 523
ClaI	ATCGAT	1 cut(s)	351
Csp6I	GTAC	2 cut(s)	157, 267
CviAII	CATG	2 cut(s)	62, 236
CviJI	RGCY	8 cut(s)	44, 74, 190, 218, 284, 392, 457, 557
CviKI_1	RGCY	8 cut(s)	44, 74, 190, 218, 284, 392, 457, 557
CviQI	GTAC	2 cut(s)	157, 267
DdeI	CTNAG	1 cut(s)	519
DpnI	GATC	8 cut(s)	57, 363, 421, 426, 438, 467, 480, 546
DpnII	GATC	8 cut(s)	55, 361, 419, 424, 436, 465, 478, 544
EciI	GGCGGA	1 cut(s)	68
Eco130I	CCWWGG	3 cut(s)	45, 387, 534
Eco31I	GGTCTC	1 cut(s)	377
Eco47I	GGWCC	1 cut(s)	523
Eco57I	CTGAAG	2 cut(s)	234, 516
EcoRII	CCWGG	1 cut(s)	525
EcoT14I	CCWWGG	3 cut(s)	45, 387, 534
ErhI	CCWWGG	3 cut(s)	45, 387, 534
FaeI	CATG	2 cut(s)	65, 239
FaiI	YATR	7 cut(s)	63, 144, 237, 276, 333, 401, 416
FaqI	GGGAC	1 cut(s)	500
FatI	CATG	2 cut(s)	61, 235
FbaI	TGATCA	2 cut(s)	436, 465
Fnu4HI	GCNGC	3 cut(s)	10, 191, 455
Fsp4HI	GCNGC	3 cut(s)	10, 191, 455
FspBI	CTAG	1 cut(s)	71
GluI	GCNGC	3 cut(s)	10, 191, 455
GsaI	CCCAGC	2 cut(s)	78, 197
HaeIII	GGCC	1 cut(s)	284
HapII	CCGG	2 cut(s)	26, 458
Hin1II	CATG	2 cut(s)	65, 239
HinfI	GANTC	8 cut(s)	65, 131, 232, 344, 353, 500, 515, 550
HpaII	CCGG	2 cut(s)	26, 458
Hpy188I	TCNGA	8 cut(s)	136, 294, 366, 424, 505, 520, 549, 574
Hpy188III	TCNNGA	3 cut(s)	62, 212, 430
HpyAV	CCTTC	1 cut(s)	113
HpyCH4IV	ACGT	1 cut(s)	307
HpyCH4V	TGCA	2 cut(s)	166, 239
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
HpyF3I	CTNAG	1 cut(s)	519
HpySE526I	ACGT	1 cut(s)	307
Hsp92II	CATG	2 cut(s)	65, 239
Ksp22I	TGATCA	2 cut(s)	436, 465
Kzo9I	GATC	8 cut(s)	55, 361, 419, 424, 436, 465, 478, 544
Lsp1109I	GCAGC	2 cut(s)	177, 466
LweI	GCATC	3 cut(s)	12, 323, 360
MaeI	CTAG	1 cut(s)	71
MaeII	ACGT	1 cut(s)	307
MalI	GATC	8 cut(s)	57, 363, 421, 426, 438, 467, 480, 546
MboI	GATC	8 cut(s)	55, 361, 419, 424, 436, 465, 478, 544
MboII	GAAGA	6 cut(s)	50, 266, 379, 460, 509, 524
MflI	RGATCY	4 cut(s)	55, 424, 478, 544
MluCI	AATT	5 cut(s)	30, 80, 137, 257, 288
MlyI	GAGTC	1 cut(s)	226
MnlI	CCTC	7 cut(s)	28, 43, 163, 180, 499, 514, 535
MseI	TTAA	1 cut(s)	260
MspI	CCGG	2 cut(s)	26, 458
MspR9I	CCNGG	2 cut(s)	459, 527
Mva1269I	GAATGC	1 cut(s)	11
MvaI	CCWGG	1 cut(s)	527
MwoI	GCNNNNNNNGC	1 cut(s)	50
NciI	CCSGG	1 cut(s)	459
NdeII	GATC	8 cut(s)	55, 361, 419, 424, 436, 465, 478, 544
NlaIII	CATG	2 cut(s)	65, 239
NlaIV	GGNNCC	2 cut(s)	179, 411
NspV	TTCGAA	1 cut(s)	117
PagI	TCATGA	1 cut(s)	61
PctI	GAATGC	1 cut(s)	11
PfeI	GAWTC	7 cut(s)	65, 131, 344, 353, 500, 515, 550
PkrI	GCNGC	3 cut(s)	11, 192, 456
PleI	GAGTC	1 cut(s)	226
PpsI	GAGTC	1 cut(s)	226
Psp1406I	AACGTT	1 cut(s)	307
Psp6I	CCWGG	1 cut(s)	525
PspFI	CCCAGC	2 cut(s)	74, 193
PspGI	CCWGG	1 cut(s)	525
PspN4I	GGNNCC	2 cut(s)	179, 411
PspPI	GGNCC	2 cut(s)	283, 523
PstNI	CAGNNNCTG	1 cut(s)	134
PsuI	RGATCY	4 cut(s)	55, 424, 478, 544
RsaI	GTAC	2 cut(s)	158, 268
RsaNI	GTAC	2 cut(s)	157, 267
SaqAI	TTAA	1 cut(s)	260
SatI	GCNGC	3 cut(s)	10, 191, 455
Sau3AI	GATC	8 cut(s)	55, 361, 419, 424, 436, 465, 478, 544
Sau96I	GGNCC	2 cut(s)	283, 523
SchI	GAGTC	1 cut(s)	226
ScrFI	CCNGG	2 cut(s)	459, 527
SetI	ASST	7 cut(s)	20, 76, 124, 174, 244, 310, 415
SfaNI	GCATC	3 cut(s)	12, 323, 360
SfuI	TTCGAA	1 cut(s)	117
SinI	GGWCC	1 cut(s)	523
Sse9I	AATT	5 cut(s)	30, 80, 137, 257, 288
SsiI	CCGC	2 cut(s)	9, 53
SspMI	CTAG	1 cut(s)	71
StyD4I	CCNGG	2 cut(s)	457, 525
StyI	CCWWGG	3 cut(s)	45, 387, 534
TaiI	ACGT	1 cut(s)	310
TaqI	TCGA	5 cut(s)	20, 117, 124, 303, 351
TasI	AATT	5 cut(s)	30, 80, 137, 257, 288
TatI	WGTACW	1 cut(s)	156
TauI	GCSGC	1 cut(s)	12
TfiI	GAWTC	7 cut(s)	65, 131, 344, 353, 500, 515, 550
Tru1I	TTAA	1 cut(s)	260
Tru9I	TTAA	1 cut(s)	260
TscAI	CASTG	2 cut(s)	211, 499
TseI	GCWGC	2 cut(s)	190, 454
TspDTI	ATGAA	3 cut(s)	50, 78, 320
TspRI	CASTG	2 cut(s)	211, 499
VpaK11BI	GGWCC	1 cut(s)	523
XapI	RAATTY	2 cut(s)	80, 288
XspI	CTAG	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.