RchiOBHm_Chr1g0378661

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000653
Physical Location & Seq
Reverse (-)
65061900 .. 65062504
605 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60207

Sequence Viewer

Length: 408 bp
ATGTTCTCTGCATACCTTCCAGGTGAAAAATTATTAGGTCAGATGAAAACAAATGATGCTGGAGAGTCTTATCTCCGTATGGGCGACTATGTGTTTGTGTATGTGAAAGACTCTAAAAAGGAAGAAATCAGAGAAGAAGAAGAAGCAGAAGACGGTTGTCCCATCTGTCTTGGGGACCACTTTAACTTGGAATGCCCATGGCGAGATAATGTTCCACCAGGCCAACAAGTTGGGCGTCTCTATGACATAAAATGCAAGGGTTGTGGTAAGTGGGGACTTGCATGCTGTGCTGAGGGAGGACTTGCTGTTCTCAGGAGGTGTGGTCATTGTTTTGATTTTGGTCACTGGGGGGACGTCTGCCCCGACTATAAGTATATGCCCCTTTCGGCCTTCCCAAATTATCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

15.25

Weight (kDa)

5.02

Isoelectric Point (pI)

52.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 357
AcyI GRCGYC 2 cut(s) 235, 354
AjnI CCWGG 2 cut(s) 19, 217
AloI GAACNNNNNNTCC 2 cut(s) 291, 323
Alw26I GTCTC 1 cut(s) 242
AoxI GGCC 2 cut(s) 220, 387
ArsI GACNNNNNNTTYG 2 cut(s) 77, 109
AspS9I GGNCC 1 cut(s) 175
AsuHPI GGTGA 1 cut(s) 35
AvaII GGWCC 1 cut(s) 175
BbsI GAAGAC 1 cut(s) 156
BbvCI CCTCAGC 1 cut(s) 291
BccI CCATC 1 cut(s) 170
BciT130I CCWGG 2 cut(s) 21, 219
BcoDI GTCTC 1 cut(s) 242
Bme1390I CCNGG 2 cut(s) 21, 219
Bme18I GGWCC 1 cut(s) 175
BmgT120I GGNCC 1 cut(s) 175
BmiI GGNNCC 1 cut(s) 176
BmrFI CCNGG 2 cut(s) 21, 219
BmrI ACTGGG 1 cut(s) 355
BmsI GCATC 1 cut(s) 46
BmuI ACTGGG 1 cut(s) 355
BoxI GACNNNNGTC 1 cut(s) 156
BpiI GAAGAC 1 cut(s) 156
BpmI CTGGAG 1 cut(s) 81
Bpu10I CCTNAGC 1 cut(s) 291
BsaHI GRCGYC 2 cut(s) 235, 354
BsaJI CCNNGG 1 cut(s) 197
BsaXI ACNNNNNCTCC 2 cut(s) 307, 337
Bse1I ACTGG 1 cut(s) 350
BseBI CCWGG 2 cut(s) 21, 219
BseDI CCNNGG 1 cut(s) 197
BseMII CTCAG 2 cut(s) 282, 325
BseNI ACTGG 1 cut(s) 350
BshFI GGCC 2 cut(s) 222, 389
BslFI GGGAC 4 cut(s) 144, 188, 288, 365
BsmAI GTCTC 1 cut(s) 242
BsmBI CGTCTC 1 cut(s) 242
BsmFI GGGAC 4 cut(s) 144, 188, 288, 365
BsmI GAATGC 1 cut(s) 197
BsnI GGCC 2 cut(s) 222, 389
Bsp19I CCATGG 1 cut(s) 197
BspANI GGCC 2 cut(s) 222, 389
BspCNI CTCAG 2 cut(s) 283, 324
BspLI GGNNCC 1 cut(s) 176
BsrI ACTGG 1 cut(s) 350
BssECI CCNNGG 1 cut(s) 197
BssNI GRCGYC 2 cut(s) 235, 354
BssT1I CCWWGG 1 cut(s) 197
Bst2UI CCWGG 2 cut(s) 21, 219
Bst4CI ACNGT 1 cut(s) 155
BstACI GRCGYC 2 cut(s) 235, 354
BstAPI GCANNNNNTGC 1 cut(s) 287
BstC8I GCNNGC 1 cut(s) 283
BstDEI CTNAG 2 cut(s) 291, 311
BstDSI CCRYGG 1 cut(s) 197
BstMAI GTCTC 1 cut(s) 242
BstMWI GCNNNNNNNGC 1 cut(s) 287
BstNI CCWGG 2 cut(s) 21, 219
BstNSI RCATGY 1 cut(s) 285
BstPAI GACNNNNGTC 1 cut(s) 156
BstSCI CCNGG 2 cut(s) 19, 217
BstV2I GAAGAC 1 cut(s) 156
BstXI CCANNNNNNTGG 1 cut(s) 230
BsuRI GGCC 2 cut(s) 222, 389
BtgI CCRYGG 1 cut(s) 197
BtsIMutI CAGTG 1 cut(s) 343
Cac8I GCNNGC 1 cut(s) 283
Cfr13I GGNCC 1 cut(s) 175
CseI GACGC 1 cut(s) 224
CspCI CAANNNNNGTGG 2 cut(s) 244, 279
CviAII CATG 3 cut(s) 198, 282, 405
CviJI RGCY 2 cut(s) 222, 389
CviKI_1 RGCY 2 cut(s) 222, 389
DdeI CTNAG 2 cut(s) 291, 311
Eco130I CCWWGG 1 cut(s) 197
Eco47I GGWCC 1 cut(s) 175
EcoRII CCWGG 2 cut(s) 19, 217
EcoT14I CCWWGG 1 cut(s) 197
ErhI CCWWGG 1 cut(s) 197
Esp3I CGTCTC 1 cut(s) 242
FaeI CATG 3 cut(s) 201, 285, 408
FaqI GGGAC 4 cut(s) 144, 188, 288, 365
FatI CATG 3 cut(s) 197, 281, 404
GsuI CTGGAG 1 cut(s) 81
HaeIII GGCC 2 cut(s) 222, 389
HgaI GACGC 1 cut(s) 224
Hin1I GRCGYC 2 cut(s) 235, 354
Hin1II CATG 3 cut(s) 201, 285, 408
HinfI GANTC 2 cut(s) 65, 110
HphI GGTGA 1 cut(s) 35
Hpy188I TCNGA 2 cut(s) 42, 131
Hpy188III TCNNGA 1 cut(s) 313
HpyAV CCTTC 2 cut(s) 26, 400
HpyCH4III ACNGT 1 cut(s) 155
HpyCH4IV ACGT 1 cut(s) 354
HpyCH4V TGCA 3 cut(s) 11, 255, 281
HpyF10VI GCNNNNNNNGC 1 cut(s) 287
HpyF3I CTNAG 2 cut(s) 291, 311
HpySE526I ACGT 1 cut(s) 354
Hsp92I GRCGYC 2 cut(s) 235, 354
Hsp92II CATG 3 cut(s) 201, 285, 408
LpnPI CCDG 7 cut(s) 6, 33, 45, 204, 231, 298, 331
LweI GCATC 1 cut(s) 46
MaeII ACGT 1 cut(s) 354
MaeIII GTNAC 1 cut(s) 341
MboII GAAGA 5 cut(s) 134, 146, 149, 152, 161
MluCI AATT 2 cut(s) 29, 397
MlyI GAGTC 2 cut(s) 74, 104
MnlI CCTC 3 cut(s) 286, 290, 309
MseI TTAA 1 cut(s) 183
MspR9I CCNGG 2 cut(s) 21, 219
Mva1269I GAATGC 1 cut(s) 197
MvaI CCWGG 2 cut(s) 21, 219
MwoI GCNNNNNNNGC 1 cut(s) 287
NcoI CCATGG 1 cut(s) 197
NlaIII CATG 3 cut(s) 201, 285, 408
NlaIV GGNNCC 1 cut(s) 176
NmuCI GTSAC 1 cut(s) 341
NspI RCATGY 1 cut(s) 285
PaeI GCATGC 1 cut(s) 285
PcsI WCGNNNNNNNCGW 1 cut(s) 360
PctI GAATGC 1 cut(s) 197
PleI GAGTC 2 cut(s) 73, 104
PpsI GAGTC 2 cut(s) 73, 104
PshAI GACNNNNGTC 1 cut(s) 156
Psp6I CCWGG 2 cut(s) 19, 217
PspGI CCWGG 2 cut(s) 19, 217
PspN4I GGNNCC 1 cut(s) 176
PspPI GGNCC 1 cut(s) 175
SaqAI TTAA 1 cut(s) 183
Sau96I GGNCC 1 cut(s) 175
SchI GAGTC 2 cut(s) 74, 104
ScrFI CCNGG 2 cut(s) 21, 219
SetI ASST 5 cut(s) 18, 25, 40, 320, 357
SfaNI GCATC 1 cut(s) 46
SinI GGWCC 1 cut(s) 175
SphI GCATGC 1 cut(s) 285
Sse9I AATT 2 cut(s) 29, 397
StyD4I CCNGG 2 cut(s) 19, 217
StyI CCWWGG 1 cut(s) 197
TaaI ACNGT 1 cut(s) 155
TaiI ACGT 1 cut(s) 357
TasI AATT 2 cut(s) 29, 397
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
TscAI CASTG 1 cut(s) 350
TseFI GTSAC 1 cut(s) 341
Tsp45I GTSAC 1 cut(s) 341
TspDTI ATGAA 1 cut(s) 59
TspGWI ACGGA 1 cut(s) 65
TspRI CASTG 1 cut(s) 350
VpaK11BI GGWCC 1 cut(s) 175
XceI RCATGY 1 cut(s) 285
ZraI GACGTC 1 cut(s) 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.